Merge branch 'prerelease-3.2.1' into czarek

[unres.git] / examples / unres / CSA / GAB / global / restrained / jpred_prediction / jp_fSt_H_1.als

diff --git a/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.als b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.als
new file mode 100644 (file)
index 0000000..b929afd
--- /dev/null
+++ b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.als
@@ -0,0 +1,46 @@
+SILENT_MODE
+BLOCK_FILE jp_fSt_H_1.concise.blc
+MAX_NSEQ 50
+MAX_INPUT_LEN 50
+OUTPUT_FILE jp_fSt_H_1.concise.ps
+PORTRAIT
+POINTSIZE 8
+IDENT_WIDTH 12
+X_OFFSET 2
+Y_OFFSET 2
+DEFINE_FONT 0 Helvetica                DEFAULT 
+DEFINE_FONT 1 Helvetica                REL             0.75   
+DEFINE_FONT 7 Helvetica                REL             0.6
+DEFINE_FONT 3 Helvetica-Bold   DEFAULT    
+DEFINE_FONT 4 Times-Bold       DEFAULT   
+DEFINE_FONT 5 Helvetica-BoldOblique    DEFAULT 
+#
+DEFINE_COLOUR 3  1 0.62 0.67   # Turquiose
+DEFINE_COLOUR 4  1 1 0         # Yellow
+DEFINE_COLOUR 5  1 0 0         # Red
+DEFINE_COLOUR 7  1 0 1         # Purple
+DEFINE_COLOUR 8  0 0 1         # Blue
+DEFINE_COLOUR 9  0 1 0         # Green
+DEFINE_COLOUR 10 0.41 0.64 1.00        # Pale blue 
+DEFINE_COLOUR 11 0.41 0.82 0.67        # Pale green 
+DEFINE_COLOUR 50 0.69 0.18 0.37        # Pink (helix)
+DEFINE_COLOUR 51 1.00 0.89 0.00        # Gold (strand)
+NUMBER_INT 10
+SETUP
+#
+# Highlight specific residues.
+# Avoid highlighting Lupas 'C' predictions by
+# limiting the highlighting to the alignments 
+Scol_CHARS     C 1 1 20 4   4
+Ccol_CHARS     H ALL    5
+Ccol_CHARS     P ALL    8
+SURROUND_CHARS LIV   ALL
+#
+# Replace known structure types with whitespace
+SUB_CHARS 1 5 20 13 H SPACE
+SUB_CHARS 1 5 20 13 E SPACE
+SUB_CHARS 1 5 20 13 - SPACE
+HELIX 3 8 8
+COLOUR_TEXT_REGION 3 8 8 8 50
+HELIX 3 13 8
+COLOUR_TEXT_REGION 3 13 8 13 50