X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?p=unres.git;a=blobdiff_plain;f=examples%2Funres%2FCSA%2FGAB%2Fglobal%2Frestrained%2Fjpred_prediction%2Fjp_fSt_H_1.als;fp=examples%2Funres%2FCSA%2FGAB%2Fglobal%2Frestrained%2Fjpred_prediction%2Fjp_fSt_H_1.als;h=b929afd81042b4d9af4e57b97ec8aa57940f3443;hp=0000000000000000000000000000000000000000;hb=2a226bfc86eabc6e4eae0c3ad1cbc3cb5417a05a;hpb=a0e685f844163003749ba91dfbf4644bcc8cfa30

diff --git a/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.als b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.als
new file mode 100644
index 0000000..b929afd
--- /dev/null
+++ b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.als
@@ -0,0 +1,46 @@
+SILENT_MODE
+BLOCK_FILE jp_fSt_H_1.concise.blc
+MAX_NSEQ 50
+MAX_INPUT_LEN 50
+OUTPUT_FILE jp_fSt_H_1.concise.ps
+PORTRAIT
+POINTSIZE 8
+IDENT_WIDTH 12
+X_OFFSET 2
+Y_OFFSET 2
+DEFINE_FONT 0 Helvetica		DEFAULT 
+DEFINE_FONT 1 Helvetica		REL		0.75   
+DEFINE_FONT 7 Helvetica		REL		0.6
+DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
+DEFINE_FONT 4 Times-Bold    	DEFAULT   
+DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
+#
+DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
+DEFINE_COLOUR 4  1 1 0		# Yellow
+DEFINE_COLOUR 5  1 0 0		# Red
+DEFINE_COLOUR 7  1 0 1		# Purple
+DEFINE_COLOUR 8  0 0 1		# Blue
+DEFINE_COLOUR 9  0 1 0		# Green
+DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
+DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
+DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
+DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
+NUMBER_INT 10
+SETUP
+#
+# Highlight specific residues.
+# Avoid highlighting Lupas 'C' predictions by
+# limiting the highlighting to the alignments 
+Scol_CHARS	C 1 1 20 4   4
+Ccol_CHARS	H ALL    5
+Ccol_CHARS	P ALL    8
+SURROUND_CHARS LIV   ALL
+#
+# Replace known structure types with whitespace
+SUB_CHARS 1 5 20 13 H SPACE
+SUB_CHARS 1 5 20 13 E SPACE
+SUB_CHARS 1 5 20 13 - SPACE
+HELIX 3 8 8
+COLOUR_TEXT_REGION 3 8 8 8 50
+HELIX 3 13 8
+COLOUR_TEXT_REGION 3 13 8 13 50