###################################################################
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
+#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
+INSTALL_DIR = /users/software/mpich2-1.4.1p1_intel
FC= ifort
FFLAGS2 = -c -g -O0 -I$(INSTALL_DIR)/include
FFLAGSE = -c -O3 -ipo -opt_report -I$(INSTALL_DIR)/include
-
-LIBS = -L$(INSTALL_DIR)/lib -lmpich
+# -lmpl only necessary for mpich2-1.4.1p1_intel
+LIBS = -L$(INSTALL_DIR)/lib -lmpich -lmpl
ARCH = LINUX
PP = /lib/cpp -P
GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
-DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
GAB: BIN = ../../../bin/unres/CSA/unres_csa_ifort_MPICH_GAB.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
GAB: ${object}
cc -o compinfo compinfo.c
./compinfo | true
enddo
endif
#endif
- call mpi_scatter(i2set,1,mpi_integer,
- & iset,1,mpi_integer,king,
- & CG_COMM,ierr)
-
+Corrected AL 8/19/2014: each processor needs whole iset array not only its
+c own element
+c call mpi_scatter(i2set,1,mpi_integer,
+c & iset,1,mpi_integer,king,
+c & CG_COMM,ierr)
+ call mpi_bcast(i2set(0),nodes,mpi_integer,king,
+ & CG_COMM,ierr)
+ iset=i2set(me)
endif
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DSCCORPDB
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w
-#OPT = -g -CB
-#OPT = -g
-CFLAGS = -DSGI -c
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../../../bin/unres/MD-M/unres_Tc_procor_oldparm_em64-D-symetr.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich ../../lib/xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o permut.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} -Wl,-M ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-permut.o : permut.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} permut.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
--- /dev/null
+Makefile_MPICH_ifort
\ No newline at end of file
###################################################################
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
+#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
+INSTALL_DIR = /users/software/mpich2-1.4.1p1_intel
FC= ifort
FFLAGS2 = -c -g -O0 -I$(INSTALL_DIR)/include
FFLAGSE = -c -O3 -ipo -opt_report -I$(INSTALL_DIR)/include
-
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a
+# -lmpl only necessary for mpich2-1.4.1p1_intel
+LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a -lmpl
ARCH = LINUX
PP = /lib/cpp -P
C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 2 3 3460
+C 0 40360 1
subroutine cinfo
include 'COMMON.IOUNITS'
write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version 2.3 build 3460'
- write(iout,*)'compiled Mon Oct 29 07:58:47 2012'
- write(iout,*)'compiled by aks255@matrix.chem.cornell.edu'
+ write(iout,*)'Version 0.40360 build 1'
+ write(iout,*)'compiled Wed Jan 7 10:41:15 2015'
+ write(iout,*)'compiled by czarek@piasek4'
write(iout,*)'OS name: Linux '
- write(iout,*)'OS release: 2.6.34.9-69.fc13.x86_64 '
+ write(iout,*)'OS release: 3.2.0-70-generic '
write(iout,*)'OS version:',
- & ' #1 SMP Tue May 3 09:23:03 UTC 2011 '
+ & ' #105-Ubuntu SMP Wed Sep 24 19:49:16 UTC 2014 '
write(iout,*)'flags:'
- write(iout,*)'CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \\'
- write(iout,*)' -DPGI -DSPLITELE -DISNAN -DAMD64 \\'
- write(iout,*)' -DPROCOR -DLANG0 \\'
- write(iout,*)' -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DSCCORP...'
- write(iout,*)'INSTALL_DIR = /users/software/mpich-1.2.7p1_int...'
+ write(iout,*)'INSTALL_DIR = /users/software/mpich2-1.4.1p1_in...'
write(iout,*)'FC= ifort'
- write(iout,*)'OPT = -O3 -ip -w'
- write(iout,*)'CFLAGS = -DSGI -c'
- write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include'
- write(iout,*)'FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)...'
- write(iout,*)'FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include'
- write(iout,*)'FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report ...'
- write(iout,*)'BIN = ../../../bin/unres/MD-M/unres_Tc_procor_o...'
- write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich ../../lib/x...'
+ write(iout,*)'OPT = -O3 -ip '
+ write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include '
+ write(iout,*)'FFLAGS1 = -c -g -CA -CB -I$(INSTALL_DIR)/inclu...'
+ write(iout,*)'FFLAGS2 = -c -g -O0 -I$(INSTALL_DIR)/include '
+ write(iout,*)'FFLAGSE = -c -O3 -ipo -opt_report -I$(INSTALL...'
+ write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdr...'
write(iout,*)'ARCH = LINUX'
write(iout,*)'PP = /lib/cpp -P'
write(iout,*)'object = unres.o arcos.o cartprint.o chainbuild...'
+ write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 ...'
+ write(iout,*)'GAB: BIN = ../../../bin/unres/MD/unres-mult-sym...'
+ write(iout,*)'4P: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -D...'
+ write(iout,*)'4P: BIN = ../../../bin/unres/MD/unres-mult-syme...'
+ write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD...'
+ write(iout,*)'E0LL2Y: BIN = ../../../bin/unres/MD/unres-mult-...'
write(iout,*)'++++ End of compile info ++++'
return
end
enddo
endif
#endif
- call mpi_scatter(i2set,1,mpi_integer,
- & iset,1,mpi_integer,king,
- & CG_COMM,ierr)
+Corrected AL 8/19/2014: each processor needs whole iset array not only its
+c own element
+c call mpi_scatter(i2set,1,mpi_integer,
+c & iset,1,mpi_integer,king,
+c & CG_COMM,ierr)
+ call mpi_bcast(i2set(0),nodes,mpi_integer,king,
+ & CG_COMM,ierr)
+ iset=i2set(me)
endif
C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 3 2 128
+C 3 2 132
subroutine cinfo
include 'COMMON.IOUNITS'
write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version 3.2 build 128'
- write(iout,*)'compiled Wed Dec 10 13:14:48 2014'
- write(iout,*)'compiled by adam@mmka'
+ write(iout,*)'Version 3.2 build 132'
+ write(iout,*)'compiled Mon Jan 5 06:40:38 2015'
+ write(iout,*)'compiled by adam@piasek4'
write(iout,*)'OS name: Linux '
- write(iout,*)'OS release: 3.2.0-72-generic '
+ write(iout,*)'OS release: 3.2.0-70-generic '
write(iout,*)'OS version:',
- & ' #107-Ubuntu SMP Thu Nov 6 14:24:01 UTC 2014 '
+ & ' #105-Ubuntu SMP Wed Sep 24 19:49:16 UTC 2014 '
write(iout,*)'flags:'
+ write(iout,*)'INSTALL_DIR = /users/software/mpich2-1.0.7'
write(iout,*)'FC= gfortran'
- write(iout,*)'FFLAGS = -c ${OPT} -I.'
- write(iout,*)'FFLAGS1 = -c ${OPT1} -I.'
- write(iout,*)'CC = cc'
- write(iout,*)'CFLAGS = -DLINUX -DPGI -c'
- write(iout,*)'OPT = -O -fbounds-check -g'
- write(iout,*)'OPT1 = -g '
- write(iout,*)'LIBS = -Lxdrf -lxdrf'
+ write(iout,*)'OPT = -O'
+ write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGS1 = -c -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGS2 = -c -O0 -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGS3 = -c -O -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGSE = -c -O3 -I$(INSTALL_DIR)/include'
+ write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread x...'
write(iout,*)'ARCH = LINUX'
write(iout,*)'PP = /lib/cpp -P'
write(iout,*)'object = unres.o arcos.o cartprint.o chainbuild...'
- write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DAMD64 -DUNRE...'
- write(iout,*)'GAB: BIN = ../../../bin/unres/MD/unres_gfortran...'
- write(iout,*)'4P: CPPFLAGS = -DLINUX -DAMD64 -DUNRES -DISNAN \\'
- write(iout,*)' -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA ...'
- write(iout,*)'4P: BIN = ../../../bin/unres/MD/unres_gfortran_...'
- write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DAMD64 -DU...'
+ write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DG77 -DAMD64 ...'
+ write(iout,*)'GAB: BIN = ../../../bin/unres/MD/unres_gfort_MP...'
+ write(iout,*)'4P: CPPFLAGS = -DLINUX -DG77 -DAMD64 -DUNRES -D...'
+ write(iout,*)'4P: BIN = ../../../bin/unres/MD/unres_gfort_MPI...'
+ write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DG77 -DAMD...'
write(iout,*)'E0LL2Y: BIN = ../../../bin/unres/MD/unres_gfort...'
write(iout,*)'++++ End of compile info ++++'
return
+++ /dev/null
-C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 0 0 700
- subroutine cinfo
- include 'COMMON.IOUNITS'
- write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version 0.0 build 700'
- write(iout,*)'compiled Tue Oct 30 05:53:04 2012'
- write(iout,*)'compiled by aks255@matrix.chem.cornell.edu'
- write(iout,*)'OS name: Linux '
- write(iout,*)'OS release: 2.6.34.9-69.fc13.x86_64 '
- write(iout,*)'OS version:',
- & ' #1 SMP Tue May 3 09:23:03 UTC 2011 '
- write(iout,*)'flags:'
- write(iout,*)'INSTALL_DIR = /users/software/mpich-1.2.7p1_int...'
- write(iout,*)'BIN = ../../../bin'
- write(iout,*)'CC = cc'
- write(iout,*)'FC = ifort'
- write(iout,*)'OPT = -g -CB'
- write(iout,*)'FFLAGS = -c ${OPT} -I. -I./include_unres -I$(IN...'
- write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich ../../lib/x...'
- write(iout,*)'CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DP...'
- write(iout,*)'objects = \\'
- write(iout,*)' wham_multparm.o \\'
- write(iout,*)' bxread.o \\'
- write(iout,*)' xread.o \\'
- write(iout,*)' cxread.o \\'
- write(iout,*)' enecalc1.o \\'
- write(iout,*)' energy_p_new.o \\'
- write(iout,*)' gnmr1.o \\'
- write(iout,*)' initialize_p.o \\'
- write(iout,*)' molread_zs.o \\'
- write(iout,*)' openunits.o \\'
- write(iout,*)' readrtns.o \\'
- write(iout,*)' read_dist_constr.o \\'
- write(iout,*)' arcos.o \\'
- write(iout,*)' cartder.o \\'
- write(iout,*)' cartprint.o \\'
- write(iout,*)' chainbuild.o \\'
- write(iout,*)' geomout.o \\'
- write(iout,*)' icant.o \\'
- write(iout,*)' intcor.o \\'
- write(iout,*)' int_from_cart.o \\'
- write(iout,*)' make_ensemble1.o \\'
- write(iout,*)' matmult.o \\'
- write(iout,*)' misc.o \\'
- write(iout,*)' mygetenv.o \\'
- write(iout,*)' parmread.o \\'
- write(iout,*)' pinorm.o \\'
- write(iout,*)' printmat.o \\'
- write(iout,*)' proc_proc.o \\'
- write(iout,*)' rescode.o \\'
- write(iout,*)' setup_var.o \\'
- write(iout,*)' slices.o \\'
- write(iout,*)' store_parm.o \\'
- write(iout,*)' timing.o \\'
- write(iout,*)' wham_calc1.o'
- write(iout,*)'objects_compar = \\'
- write(iout,*)' readrtns_compar.o \\'
- write(iout,*)' readpdb.o permut.o fitsq.o contact.o \\'
- write(iout,*)' elecont.o contfunc.o cont_frag.o conf_c...'
- write(iout,*)'++++ End of compile info ++++'
- return
- end