+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
-
-FC= ifort
-
-OPT = -g -ip -w -CB
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- MP.o compare_s1.o prng.o \
- banach.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o test.o
-
-GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
- -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-GAB: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_GAB.exe
-GAB: ${object} xdrf/libxdrf.a
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
- -DSPLITELE -DLANG0
-E0LL2Y: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe
-E0LL2Y: ${object} xdrf/libxdrf.a
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-xdrf/libxdrf.a:
- cd xdrf && make
-
-
-clean:
- /bin/rm -f *.o && /bin/rm -f compinfo && cd xdrf && make clean
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-MD_A-MTS.o : MD_A-MTS.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS2} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 2 5 300
- subroutine cinfo
- include 'COMMON.IOUNITS'
- write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version 2.5 build 300'
- write(iout,*)'compiled Thu Jul 5 03:59:46 2012'
- write(iout,*)'compiled by aks255@matrix.chem.cornell.edu'
- write(iout,*)'OS name: Linux '
- write(iout,*)'OS release: 2.6.34.9-69.fc13.x86_64 '
- write(iout,*)'OS version:',
- & ' #1 SMP Tue May 3 09:23:03 UTC 2011 '
- write(iout,*)'flags:'
- write(iout,*)'INSTALL_DIR = /users/software/mpich-1.2.7p1_int...'
- write(iout,*)'FC= ifort'
- write(iout,*)'OPT = -g -ip -w -CB '
- write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include '
- write(iout,*)'FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)...'
- write(iout,*)'FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include '
- write(iout,*)'FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report ...'
- write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdr...'
- write(iout,*)'ARCH = LINUX'
- write(iout,*)'PP = /lib/cpp -P'
- write(iout,*)'object = unres.o arcos.o cartprint.o chainbuild...'
- write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES ...'
- write(iout,*)'GAB: BIN = ../../../bin/unres/MD/unres_ifort_MP...'
- write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNR...'
- write(iout,*)'E0LL2Y: BIN = ../../../bin/unres/MD/unres_ifort...'
- write(iout,*)'++++ End of compile info ++++'
- return
- end
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN = ../../../bin/wham/
-FC= ifort
-#OPT = -mcmodel=medium -O3 -ip -w
-OPT = -mcmodel=medium -g -CB
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DISNAN -DAMD64 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- gnmr1.o\
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -static-intel -o ${BIN}/wham_multparm-ham_rep-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 0 0 567
- subroutine cinfo
- include 'COMMON.IOUNITS'
- write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version 0.0 build 567'
- write(iout,*)'compiled Thu Jul 5 04:03:19 2012'
- write(iout,*)'compiled by aks255@matrix.chem.cornell.edu'
- write(iout,*)'OS name: Linux '
- write(iout,*)'OS release: 2.6.34.9-69.fc13.x86_64 '
- write(iout,*)'OS version:',
- & ' #1 SMP Tue May 3 09:23:03 UTC 2011 '
- write(iout,*)'flags:'
- write(iout,*)'INSTALL_DIR = /users/software/mpich-1.2.7p1_int...'
- write(iout,*)'BIN = ../../../bin/wham/'
- write(iout,*)'FC= ifort'
- write(iout,*)'OPT = -mcmodel=medium -g -CB'
- write(iout,*)'FFLAGS = ${OPT} -c -I. -I./include_unres -I$(IN...'
- write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xd...'
- write(iout,*)'CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DP...'
- write(iout,*)'objects = \\'
- write(iout,*)' wham_multparm.o \\'
- write(iout,*)' bxread.o \\'
- write(iout,*)' xread.o \\'
- write(iout,*)' cxread.o \\'
- write(iout,*)' enecalc1.o \\'
- write(iout,*)' energy_p_new.o \\'
- write(iout,*)' initialize_p.o \\'
- write(iout,*)' molread_zs.o \\'
- write(iout,*)' openunits.o \\'
- write(iout,*)' readrtns.o \\'
- write(iout,*)' gnmr1.o\\'
- write(iout,*)' arcos.o \\'
- write(iout,*)' cartder.o \\'
- write(iout,*)' cartprint.o \\'
- write(iout,*)' chainbuild.o \\'
- write(iout,*)' geomout.o \\'
- write(iout,*)' icant.o \\'
- write(iout,*)' intcor.o \\'
- write(iout,*)' int_from_cart.o \\'
- write(iout,*)' make_ensemble1.o \\'
- write(iout,*)' matmult.o \\'
- write(iout,*)' misc.o \\'
- write(iout,*)' mygetenv.o \\'
- write(iout,*)' parmread.o \\'
- write(iout,*)' pinorm.o \\'
- write(iout,*)' printmat.o \\'
- write(iout,*)' proc_proc.o \\'
- write(iout,*)' rescode.o \\'
- write(iout,*)' setup_var.o \\'
- write(iout,*)' slices.o \\'
- write(iout,*)' store_parm.o \\'
- write(iout,*)' timing.o \\'
- write(iout,*)' wham_calc1.o'
- write(iout,*)'objects_compar = \\'
- write(iout,*)' readrtns_compar.o \\'
- write(iout,*)' readpdb.o fitsq.o contact.o \\'
- write(iout,*)' elecont.o contfunc.o cont_frag.o conf_c...'
- write(iout,*)'++++ End of compile info ++++'
- return
- end
do while (iret.gt.0)
#if (defined(AIX) && !defined(JUBL))
+#ifdef DEBUG
+ write (iout,*) "ii",ii," itraj",itraj," it",it
+#endif
call xdrffloat_(ixdrf, rtime, iret)
-c print *,"rtime",rtime," iret",iret
call xdrffloat_(ixdrf, rpotE, iret)
-c write (iout,*) "rpotE",rpotE," iret",iret
+#ifdef DEBUG
+ write (iout,*) "rtime",rtime," rpotE",rpotE," iret",iret
+#endif
call flush(iout)
call xdrffloat_(ixdrf, ruconst, iret)
call xdrffloat_(ixdrf, rt_bath, iret)
call xdrfint_(ixdrf, nss, iret)
+#ifdef DEBUG
+ write (iout,*) "ruconst",ruconst," rt_bath",rt_bath," nss",nss
+#endif
do j=1,nss
call xdrfint_(ixdrf, ihpb(j), iret)
call xdrfint_(ixdrf, jhpb(j), iret)
call xdrffloat_(ixdrf, rprop(i), iret)
enddo
#else
+#ifdef DEBUG
+ write (iout,*) "ii",ii," itraj",itraj," it",it
+#endif
call xdrffloat(ixdrf, rtime, iret)
call xdrffloat(ixdrf, rpotE, iret)
-c write (iout,*) "rpotE",rpotE," iret",iret
+#ifdef DEBUG
+ write (iout,*) "rtime",rtime," rpotE",rpotE," iret",iret
+#endif
call flush(iout)
call xdrffloat(ixdrf, ruconst, iret)
call xdrffloat(ixdrf, rt_bath, iret)
call xdrfint(ixdrf, nss, iret)
+#ifdef DEBUG
+ write (iout,*) "ruconst",ruconst," rt_bath",rt_bath," nss",nss
+#endif
do j=1,nss
call xdrfint(ixdrf, ihpb(j), iret)
call xdrfint(ixdrf, jhpb(j), iret)
#endif
if (iret.eq.0) exit
itraj=mod(it,totraj(iR,iparm))
-#ifdef DEBUG
- write (iout,*) "ii",ii," itraj",itraj," it",it
-#endif
if (iset.eq.0) iset = 1
call flush(iout)
it=it+1
projects / unres.git / commitdiff