contact.f
convert.f
cored.f
- csa.f
+ csa.F
dfa.F
diff12.f
distfit.f
cartder.F
chainbuild.F
checkder_p.F
+ csa.F
dfa.F
econstr_local.F
energy_p_new_barrier.F
#=========================================
if(UNRES_CSA_FF STREQUAL "CASP3" )
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_TOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMOMENT" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DCRYST_TOR" )
elseif(UNRES_CSA_FF STREQUAL "ALPHA")
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
elseif(UNRES_CSA_FF STREQUAL "BETA")
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
elseif(UNRES_CSA_FF STREQUAL "ALPHABETA")
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
elseif(UNRES_CSA_FF STREQUAL "CASP5")
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DMOMENT -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
elseif(UNRES_CSA_FF STREQUAL "3P")
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
elseif(UNRES_CSA_FF STREQUAL "4P")
- set(CPPFLAGS "PROCOR -DUNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
+ set(CPPFLAGS "UNRES -DISNAN -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC" )
endif(UNRES_CSA_FF STREQUAL "CASP3")
#=========================================
-Makefile-DFA-NEWPARM.matrix
\ No newline at end of file
+Makefile_MPICH_ifort
\ No newline at end of file
--- /dev/null
+#################################################################################
+FC = mpixlf77
+OPT = -O4 -qarch=qp -qtune=qp -qnocr
+#OPT = -O3 -qarch=qp -qtune=qp -qdebug=function_trace
+#OPT = -O -qarch=qp -qtune=qp
+#OPT = -O0 -C -g -qarch=qp -qtune=qp #-qdebug=function_trace
+#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
+#-Mprefetch=distance:8,nta
+
+#OPT1 = -O -g -qarch=qp -qtune=qp
+#OPT1 = -O -g -qarch=qp -qtune=qp -qdebug=function_trace
+OPT1 = ${OPT}
+#OPT2 = -O2 -qarch=qp -qtune=qp
+#OPT2 = -O2 -qarch=qp -qtune=qp -qdebug=function_trace
+OPT2 = ${OPT}
+#OPTE = -O4 -qarch=qp -qtune=qp
+#OPTE = -O4 -qarch=qp -qtune=qp
+OPTE=${OPT}
+
+CFLAGS = -c
+FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
+FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
+FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
+FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
+
+LIBS = xdrf/libxdrf.a
+
+ARCH = LINUX
+PP = /lib/cpp -P
+
+all: no_option
+ @echo "Specify force field: GAB, E0LL2Y, 4P or CASP3"
+
+.SUFFIXES: .F
+.F.o:
+ ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
+
+
+object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
+ matmult.o readrtns_csa.o parmread.o \
+ pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
+ cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
+ gradient_p.o minimize_p.o sumsld.o \
+ cored.o rmdd.o geomout_min.o readpdb.o \
+ intcartderiv.o \
+ MP.o printmat.o convert.o int_to_cart.o \
+ dfa.o \
+ together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
+ indexx.o prng_32.o contact.o gen_rand_conf.o \
+ sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
+ distfit.o banach.o TMscore_subroutine.o minim_mult.o refsys.o
+
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+GAB: BIN = ../../../bin/unres/CSA/unres_csa-DL_xlf77_MPICH_GAB.exe
+LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
+GAB: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0
+E0LL2Y: BIN = ../../../bin/unres/CSA/unres_csa-DL_xlf77_MPICH_E0LL2Y.exe
+E0LL2Y: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+4P: CPPFLAGS = -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
+ -DSPLITELE -DAMD64 -DLANG0 \
+ -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/CSA/unres_csa-DL_xlf77_MPICH_4P.exe
+4P: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+clean:
+ /bin/rm -f *.o && /bin/rm -f compinfo
+
+test.o: test.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} test.F
+
+chainbuild.o: chainbuild.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
+
+matmult.o: matmult.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
+
+parmread.o : parmread.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
+
+intcor.o : intcor.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
+
+cartder.o : cartder.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
+
+readpdb.o : readpdb.F
+ ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
+
+sumsld.o : sumsld.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
+
+cored.o : cored.f
+ ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
+
+rmdd.o : rmdd.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
+
+energy_p_new_barrier.o : energy_p_new_barrier.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
+
+gradient_p.o : gradient_p.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
+
+energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F
+
+lagrangian_lesyng.o : lagrangian_lesyng.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
+
+MD_A-MTS.o : MD_A-MTS.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F
+
+blas.o : blas.f
+ ${FC} ${FFLAGS1} blas.f
+
+add.o : add.f
+ ${FC} ${FFLAGS1} add.f
+
+eigen.o : eigen.f
+ ${FC} ${FFLAGS2} eigen.f
+
+proc_proc.o: proc_proc.c
+ ${CC} ${CFLAGS} proc_proc.c
--- /dev/null
+###################################################################
+INSTALL_DIR = /users/software/mpich2-1.0.7
+
+FC= gfortran
+
+OPT = -O
+
+FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
+FFLAGS1 = -c -I$(INSTALL_DIR)/include
+FFLAGS2 = -c -O0 -I$(INSTALL_DIR)/include
+FFLAGS3 = -c -O -I$(INSTALL_DIR)/include
+FFLAGSE = -c -O3 -I$(INSTALL_DIR)/include
+
+LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread
+
+ARCH = LINUX
+PP = /lib/cpp -P
+
+
+all: no_option
+ @echo "Specify force field: GAB, E0LL2Y, 4P or CASP3"
+
+.SUFFIXES: .F
+.F.o:
+ ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
+
+
+object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
+ matmult.o readrtns_csa.o parmread.o \
+ pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
+ cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
+ gradient_p.o minimize_p.o sumsld.o \
+ cored.o rmdd.o geomout_min.o readpdb.o \
+ intcartderiv.o \
+ MP.o printmat.o convert.o int_to_cart.o \
+ dfa.o \
+ together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
+ indexx.o prng_32.o contact.o gen_rand_conf.o \
+ sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
+ distfit.o banach.o TMscore_subroutine.o minim_mult.o refsys.o
+
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DG77 -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+GAB: BIN = ../../../bin/unres/CSA/unres_csa-DL_gfort_MPICH_GAB.exe
+GAB: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DG77 -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0
+E0LL2Y: BIN = ../../../bin/unres/CSA/unres_csa-DL_gfort_MPICH_E0LL2Y.exe
+E0LL2Y: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+4P: CPPFLAGS = -DLINUX -DG77 -DISNAN -DMP -DMPI -DUNRES \
+ -DSPLITELE -DAMD64 -DLANG0 \
+ -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/CSA/unres_csa-DL_gfort_MPICH_4P.exe
+4P: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+clean:
+ /bin/rm -f *.o && /bin/rm -f compinfo
+
+test.o: test.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} test.F
+
+chainbuild.o: chainbuild.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
+
+matmult.o: matmult.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
+
+parmread.o : parmread.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
+
+intcor.o : intcor.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
+
+cartder.o : cartder.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
+
+readpdb.o : readpdb.F
+ ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
+
+sumsld.o : sumsld.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
+
+cored.o : cored.f
+ ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
+
+rmdd.o : rmdd.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
+
+energy_p_new_barrier.o : energy_p_new_barrier.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
+
+gradient_p.o : gradient_p.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
+
+energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F
+
+lagrangian_lesyng.o : lagrangian_lesyng.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
+
+MD_A-MTS.o : MD_A-MTS.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F
+
+blas.o : blas.f
+ ${FC} ${FFLAGS1} blas.f
+
+add.o : add.f
+ ${FC} ${FFLAGS1} add.f
+
+eigen.o : eigen.f
+ ${FC} ${FFLAGS2} eigen.f
+
+proc_proc.o: proc_proc.c
+ ${CC} ${CFLAGS} proc_proc.c
--- /dev/null
+###################################################################
+INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
+
+
+FC= ifort
+
+OPT = -O3 -ip
+
+FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
+FFLAGS1 = -c -g -CA -CB -I$(INSTALL_DIR)/include
+FFLAGS2 = -c -g -O0 -I$(INSTALL_DIR)/include
+FFLAGSE = -c -O3 -ipo -opt_report -I$(INSTALL_DIR)/include
+
+
+LIBS = -L$(INSTALL_DIR)/lib -lmpich
+
+ARCH = LINUX
+PP = /lib/cpp -P
+
+
+all: no_option
+ @echo "Specify force field: GAB, E0LL2Y, 4P or CASP3"
+
+.SUFFIXES: .F
+.F.o:
+ ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
+
+
+object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
+ matmult.o readrtns_csa.o parmread.o \
+ pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
+ cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
+ gradient_p.o minimize_p.o sumsld.o \
+ cored.o rmdd.o geomout_min.o readpdb.o \
+ intcartderiv.o \
+ MP.o printmat.o convert.o int_to_cart.o \
+ dfa.o \
+ together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
+ indexx.o prng_32.o contact.o gen_rand_conf.o \
+ sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
+ distfit.o banach.o TMscore_subroutine.o minim_mult.o refsys.o
+
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+GAB: BIN = ../../../bin/unres/CSA/unres_csa-DL_ifort_MPICH_GAB.exe
+LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
+GAB: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0
+E0LL2Y: BIN = ../../../bin/unres/CSA/unres_csa-DL_ifort_MPICH_E0LL2Y.exe
+E0LL2Y: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+4P: CPPFLAGS = -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
+ -DSPLITELE -DAMD64 -DLANG0 \
+ -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/CSA/unres_csa-DL_ifort_MPICH_4P.exe
+4P: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+clean:
+ /bin/rm -f *.o && /bin/rm -f compinfo
+
+test.o: test.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} test.F
+
+chainbuild.o: chainbuild.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
+
+matmult.o: matmult.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
+
+parmread.o : parmread.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
+
+intcor.o : intcor.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
+
+cartder.o : cartder.F
+ ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
+
+readpdb.o : readpdb.F
+ ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
+
+sumsld.o : sumsld.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
+
+cored.o : cored.f
+ ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
+
+rmdd.o : rmdd.f
+ ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
+
+energy_p_new_barrier.o : energy_p_new_barrier.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
+
+gradient_p.o : gradient_p.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
+
+energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F
+
+lagrangian_lesyng.o : lagrangian_lesyng.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
+
+MD_A-MTS.o : MD_A-MTS.F
+ ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F
+
+blas.o : blas.f
+ ${FC} ${FFLAGS1} blas.f
+
+add.o : add.f
+ ${FC} ${FFLAGS1} add.f
+
+eigen.o : eigen.f
+ ${FC} ${FFLAGS2} eigen.f
+
+proc_proc.o: proc_proc.c
+ ${CC} ${CFLAGS} proc_proc.c
--- /dev/null
+ subroutine make_array
+ implicit real*8 (a-h,o-z)
+ include 'DIMENSIONS'
+ include 'COMMON.IOUNITS'
+ include 'COMMON.CHAIN'
+ include 'COMMON.INTERACT'
+ include 'COMMON.CSA'
+
+ccccccccccccccccccccccccc
+c Level-2: group
+ccccccccccccccccccccccccc
+
+ indg=0
+ do k=1,numch
+ccccccccccccccccccccccccccccccccccccccccc
+! Groups the THETAs and the GAMMAs
+ do j=2,nres-1
+ indg=indg+1
+ if (j.lt.nres-1) then
+ ngroup(indg)=2
+ else
+ ngroup(indg)=1
+ endif
+ do i=1,ngroup(indg)
+ igroup(1,i,indg)=i
+ igroup(2,i,indg)=j
+ igroup(3,i,indg)=k
+ enddo
+ enddo
+ccccccccccccccccccccccccccccccccccccccccc
+ enddo
+! Groups the ALPHAs and the BETAs
+ do k=1,numch
+ do j=2,nres-1
+ if(itype(j).ne.10) then
+ indg=indg+1
+ ngroup(indg)=2
+ do i=1,ngroup(indg)
+ igroup(1,i,indg)=i+2
+ igroup(2,i,indg)=j
+ igroup(3,i,indg)=k
+ enddo
+ endif
+ enddo
+ enddo
+
+ ntotgr=indg
+ write(iout,*)
+ write(iout,*) "# of groups: ",ntotgr
+ do i=1,ntotgr
+ write(iout,41) i,ngroup(i),((igroup(k,j,i),k=1,3),j=1,ngroup(i))
+ enddo
+! close(iout)
+
+ 40 format(i3,3x,3i3)
+ 41 format(2i3,3x,6(3i3,2x))
+
+ return
+ end
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ subroutine make_ranvar(n,m,idum)
+ implicit real*8 (a-h,o-z)
+ include 'DIMENSIONS'
+ include 'COMMON.IOUNITS'
+ include 'COMMON.CHAIN'
+ include 'COMMON.VAR'
+ include 'COMMON.BANK'
+c al m=0
+ print *,'HOHOHOHO Make_RanVar!!!!!',n,m
+ itrial=0
+ do while(m.lt.n .and. itrial.le.10000)
+ itrial=itrial+1
+ jeden=1
+ call gen_rand_conf(jeden,*10)
+ call intout
+ m=m+1
+ do j=2,nres-1
+ dihang_in(1,j,1,m)=theta(j+1)
+ dihang_in(2,j,1,m)=phi(j+2)
+ dihang_in(3,j,1,m)=alph(j)
+ dihang_in(4,j,1,m)=omeg(j)
+ enddo
+ dihang_in(2,nres-1,1,m)=0.0d0
+ goto 20
+ 10 write (iout,*) 'Failed to generate conformation #',m+1,
+ & ' itrial=',itrial
+ 20 continue
+ enddo
+ print *,'Make_RanVar!!!!! m=',m,' itrial=',itrial
+
+ return
+ end
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ subroutine make_ranvar_reg(n,idum)
+ implicit real*8 (a-h,o-z)
+ include 'DIMENSIONS'
+ include 'COMMON.IOUNITS'
+ include 'COMMON.CHAIN'
+ include 'COMMON.VAR'
+ include 'COMMON.BANK'
+ include 'COMMON.GEO'
+ m=0
+ print *,'HOHOHOHO Make_RanVar_reg!!!!!'
+ itrial=0
+ do while(m.lt.n .and. itrial.le.10000)
+ itrial=itrial+1
+ jeden=1
+ call gen_rand_conf(jeden,*10)
+! call intout
+ m=m+1
+ do j=2,nres-1
+ dihang_in(1,j,1,m)=theta(j+1)
+ dihang_in(2,j,1,m)=phi(j+2)
+ dihang_in(3,j,1,m)=alph(j)
+ dihang_in(4,j,1,m)=omeg(j)
+ if(m.le.n*0.1) then
+ dihang_in(1,j,1,m)=90.0*deg2rad
+ dihang_in(2,j,1,m)=50.0*deg2rad
+ endif
+ enddo
+ dihang_in(2,nres-1,1,m)=0.0d0
+ goto 20
+ 10 write (iout,*) 'Failed to generate conformation #',m+1,
+ & ' itrial=',itrial
+ 20 continue
+ enddo
+ print *,'Make_RanVar!!!!! m=',m,' itrial=',itrial
+
+ return
+ end
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ subroutine from_pdb(n,idum)
+c This subroutine stores the UNRES int variables generated from
+c subroutine readpdb into the 1st conformation of in dihang_in.
+c Subsequent n-1 conformations of dihang_in have identical values
+c of theta and phi as the 1st conformation but random values for
+c alph and omeg.
+c The array cref (also generated from subroutine readpdb) is stored
+c to crefjlee to be used for rmsd calculation in CSA, if necessary.
+ implicit real*8 (a-h,o-z)
+ include 'DIMENSIONS'
+ include 'COMMON.IOUNITS'
+ include 'COMMON.CHAIN'
+ include 'COMMON.VAR'
+ include 'COMMON.BANK'
+ include 'COMMON.GEO'
+
+ m=1
+ do j=2,nres-1
+ dihang_in(1,j,1,m)=theta(j+1)
+ dihang_in(2,j,1,m)=phi(j+2)
+ dihang_in(3,j,1,m)=alph(j)
+ dihang_in(4,j,1,m)=omeg(j)
+ enddo
+ dihang_in(2,nres-1,1,k)=0.0d0
+
+ do m=2,n
+ do k=2,nres-1
+ dihang_in(1,k,1,m)=dihang_in(1,k,1,1)
+ dihang_in(2,k,1,m)=dihang_in(2,k,1,1)
+ if(dabs(dihang_in(3,k,1,1)).gt.1.d-6) then
+ dihang_in(3,k,1,m)=90.d0*ran1(idum)+90.d0
+ dihang_in(3,k,1,m)=dihang_in(3,k,1,m)*deg2rad
+ endif
+ if(dabs(dihang_in(4,k,1,1)).gt.1.d-6) then
+ dihang_in(4,k,1,m)=360.d0*ran1(idum)-180.d0
+ dihang_in(4,k,1,m)=dihang_in(4,k,1,m)*deg2rad
+ endif
+ enddo
+ enddo
+
+c Store cref to crefjlee (they are in COMMON.CHAIN).
+ do k=1,2*nres
+ do kk=1,3
+ crefjlee(kk,k)=cref(kk,k)
+ enddo
+ enddo
+
+ open(icsa_native_int,file=csa_native_int,status="old")
+ do m=1,n
+ write(icsa_native_int,*) m,e
+ write(icsa_native_int,200)
+ & (dihang_in(1,k,1,m)*rad2deg,k=2,nres-1)
+ write(icsa_native_int,200)
+ & (dihang_in(2,k,1,m)*rad2deg,k=2,nres-2)
+ write(icsa_native_int,200)
+ & (dihang_in(3,k,1,m)*rad2deg,k=2,nres-1)
+ write(icsa_native_int,200)
+ & (dihang_in(4,k,1,m)*rad2deg,k=2,nres-1)
+ enddo
+
+ do k=1,nres
+ write(icsa_native_int,200) (crefjlee(i,k),i=1,3)
+ enddo
+ close(icsa_native_int)
+
+ 200 format (8f10.4)
+
+ return
+ end
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ subroutine from_int(n,mm,idum)
+ implicit real*8 (a-h,o-z)
+ include 'DIMENSIONS'
+ include 'COMMON.IOUNITS'
+ include 'COMMON.CHAIN'
+ include 'COMMON.VAR'
+ include 'COMMON.INTERACT'
+ include 'COMMON.BANK'
+ include 'COMMON.GEO'
+ include 'COMMON.CONTACTS'
+#ifdef MOMENT
+ include 'COMMON.CONTACTS.MOMENT'
+#endif
+ integer ilen
+ external ilen
+ logical fail
+ double precision energia(0:n_ene)
+
+ open(icsa_native_int,file=csa_native_int,status="old")
+ read (icsa_native_int,*)
+ call read_angles(icsa_native_int,*10)
+ goto 11
+ 10 write (iout,'(2a)') "CHUJ NASTAPIL - error in ",
+ & csa_native_int(:ilen(csa_native_int))
+ 11 continue
+ call intout
+ do j=2,nres-1
+ dihang_in(1,j,1,1)=theta(j+1)
+ dihang_in(2,j,1,1)=phi(j+2)
+ dihang_in(3,j,1,1)=alph(j)
+ dihang_in(4,j,1,1)=omeg(j)
+ enddo
+ dihang_in(2,nres-1,1,1)=0.0d0
+
+c read(icsa_native_int,*) ind,e
+c read(icsa_native_int,200) (dihang_in(1,k,1,1),k=2,nres-1)
+c read(icsa_native_int,200) (dihang_in(2,k,1,1),k=2,nres-2)
+c read(icsa_native_int,200) (dihang_in(3,k,1,1),k=2,nres-1)
+c read(icsa_native_int,200) (dihang_in(4,k,1,1),k=2,nres-1)
+c dihang_in(2,nres-1,1,1)=0.d0
+
+ maxsi=100
+ maxcount_fail=100
+
+ do m=mm+2,n
+c do k=2,nres-1
+c dihang_in(1,k,1,m)=dihang_in(1,k,1,1)
+c dihang_in(2,k,1,m)=dihang_in(2,k,1,1)
+c if(abs(dihang_in(3,k,1,1)).gt.1.d-3) then
+c dihang_in(3,k,1,m)=90.d0*ran1(idum)+90.d0
+c endif
+c if(abs(dihang_in(4,k,1,1)).gt.1.d-3) then
+c dihang_in(4,k,1,m)=360.d0*ran1(idum)-180.d0
+c endif
+c enddo
+c call intout
+ fail=.true.
+
+ icount_fail=0
+
+ DO WHILE (FAIL .AND. ICOUNT_FAIL .LE. MAXCOUNT_FAIL)
+
+ do i=nnt,nct
+ if (itype(i).ne.10) then
+cd print *,'i=',i,' itype=',itype(i),' theta=',theta(i+1)
+ fail=.true.
+ ii=0
+ do while (fail .and. ii .le. maxsi)
+ call gen_side(itype(i),theta(i+1),alph(i),omeg(i),fail)
+ ii = ii+1
+ enddo
+ endif
+ enddo
+ call chainbuild
+ call etotal(energia(0))
+ fail = (energia(0).ge.1.0d20)
+ icount_fail=icount_fail+1
+
+ ENDDO
+
+ if (icount_fail.gt.maxcount_fail) then
+ write (iout,*)
+ & 'Failed to generate non-overlaping near-native conf.',
+ & m
+ endif
+
+ do j=2,nres-1
+ dihang_in(1,j,1,m)=theta(j+1)
+ dihang_in(2,j,1,m)=phi(j+2)
+ dihang_in(3,j,1,m)=alph(j)
+ dihang_in(4,j,1,m)=omeg(j)
+ enddo
+ dihang_in(2,nres-1,1,m)=0.0d0
+ enddo
+
+c do m=1,n
+c write(icsa_native_int,*) m,e
+c write(icsa_native_int,200) (dihang_in(1,k,1,m),k=2,nres-1)
+c write(icsa_native_int,200) (dihang_in(2,k,1,m),k=2,nres-2)
+c write(icsa_native_int,200) (dihang_in(3,k,1,m),k=2,nres-1)
+c write(icsa_native_int,200) (dihang_in(4,k,1,m),k=2,nres-1)
+c enddo
+c close(icsa_native_int)
+
+c do m=mm+2,n
+c do i=1,4
+c do j=2,nres-1
+c dihang_in(i,j,1,m)=dihang_in(i,j,1,m)*deg2rad
+c enddo
+c enddo
+c enddo
+
+ call dihang_to_c(dihang_in(1,1,1,1))
+
+c Store c to cref (they are in COMMON.CHAIN).
+ do k=1,2*nres
+ do kk=1,3
+ crefjlee(kk,k)=c(kk,k)
+ enddo
+ enddo
+
+ call contact(.true.,ncont_ref,icont_ref,co)
+
+c do k=1,nres
+c write(icsa_native_int,200) (crefjlee(i,k),i=1,3)
+c enddo
+ close(icsa_native_int)
+
+ 200 format (8f10.4)
+
+ return
+ end
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ subroutine dihang_to_c(aarray)
+ implicit real*8 (a-h,o-z)
+ include 'DIMENSIONS'
+ include 'COMMON.CSA'
+ include 'COMMON.BANK'
+ include 'COMMON.CHAIN'
+ include 'COMMON.GEO'
+ include 'COMMON.VAR'
+
+ dimension aarray(mxang,maxres,mxch)
+
+c do i=4,nres
+c phi(i)=dihang_in(1,i-2,1,1)
+c enddo
+ do i=2,nres-1
+ theta(i+1)=aarray(1,i,1)
+ phi(i+2)=aarray(2,i,1)
+ alph(i)=aarray(3,i,1)
+ omeg(i)=aarray(4,i,1)
+ enddo
+
+ call chainbuild
+
+ return
+ end
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+ccccccccccccccccccccccccccccccccccccccccccccccccc
+++ /dev/null
- subroutine make_array
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.INTERACT'
- include 'COMMON.CSA'
-
-ccccccccccccccccccccccccc
-c Level-2: group
-ccccccccccccccccccccccccc
-
- indg=0
- do k=1,numch
-ccccccccccccccccccccccccccccccccccccccccc
-! Groups the THETAs and the GAMMAs
- do j=2,nres-1
- indg=indg+1
- if (j.lt.nres-1) then
- ngroup(indg)=2
- else
- ngroup(indg)=1
- endif
- do i=1,ngroup(indg)
- igroup(1,i,indg)=i
- igroup(2,i,indg)=j
- igroup(3,i,indg)=k
- enddo
- enddo
-ccccccccccccccccccccccccccccccccccccccccc
- enddo
-! Groups the ALPHAs and the BETAs
- do k=1,numch
- do j=2,nres-1
- if(itype(j).ne.10) then
- indg=indg+1
- ngroup(indg)=2
- do i=1,ngroup(indg)
- igroup(1,i,indg)=i+2
- igroup(2,i,indg)=j
- igroup(3,i,indg)=k
- enddo
- endif
- enddo
- enddo
-
- ntotgr=indg
- write(iout,*)
- write(iout,*) "# of groups: ",ntotgr
- do i=1,ntotgr
- write(iout,41) i,ngroup(i),((igroup(k,j,i),k=1,3),j=1,ngroup(i))
- enddo
-! close(iout)
-
- 40 format(i3,3x,3i3)
- 41 format(2i3,3x,6(3i3,2x))
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine make_ranvar(n,m,idum)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.BANK'
-c al m=0
- print *,'HOHOHOHO Make_RanVar!!!!!',n,m
- itrial=0
- do while(m.lt.n .and. itrial.le.10000)
- itrial=itrial+1
- jeden=1
- call gen_rand_conf(jeden,*10)
- call intout
- m=m+1
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,m)=0.0d0
- goto 20
- 10 write (iout,*) 'Failed to generate conformation #',m+1,
- & ' itrial=',itrial
- 20 continue
- enddo
- print *,'Make_RanVar!!!!! m=',m,' itrial=',itrial
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine make_ranvar_reg(n,idum)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.BANK'
- include 'COMMON.GEO'
- m=0
- print *,'HOHOHOHO Make_RanVar_reg!!!!!'
- itrial=0
- do while(m.lt.n .and. itrial.le.10000)
- itrial=itrial+1
- jeden=1
- call gen_rand_conf(jeden,*10)
-! call intout
- m=m+1
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- if(m.le.n*0.1) then
- dihang_in(1,j,1,m)=90.0*deg2rad
- dihang_in(2,j,1,m)=50.0*deg2rad
- endif
- enddo
- dihang_in(2,nres-1,1,m)=0.0d0
- goto 20
- 10 write (iout,*) 'Failed to generate conformation #',m+1,
- & ' itrial=',itrial
- 20 continue
- enddo
- print *,'Make_RanVar!!!!! m=',m,' itrial=',itrial
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine from_pdb(n,idum)
-c This subroutine stores the UNRES int variables generated from
-c subroutine readpdb into the 1st conformation of in dihang_in.
-c Subsequent n-1 conformations of dihang_in have identical values
-c of theta and phi as the 1st conformation but random values for
-c alph and omeg.
-c The array cref (also generated from subroutine readpdb) is stored
-c to crefjlee to be used for rmsd calculation in CSA, if necessary.
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.BANK'
- include 'COMMON.GEO'
-
- m=1
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,k)=0.0d0
-
- do m=2,n
- do k=2,nres-1
- dihang_in(1,k,1,m)=dihang_in(1,k,1,1)
- dihang_in(2,k,1,m)=dihang_in(2,k,1,1)
- if(dabs(dihang_in(3,k,1,1)).gt.1.d-6) then
- dihang_in(3,k,1,m)=90.d0*ran1(idum)+90.d0
- dihang_in(3,k,1,m)=dihang_in(3,k,1,m)*deg2rad
- endif
- if(dabs(dihang_in(4,k,1,1)).gt.1.d-6) then
- dihang_in(4,k,1,m)=360.d0*ran1(idum)-180.d0
- dihang_in(4,k,1,m)=dihang_in(4,k,1,m)*deg2rad
- endif
- enddo
- enddo
-
-c Store cref to crefjlee (they are in COMMON.CHAIN).
- do k=1,2*nres
- do kk=1,3
- crefjlee(kk,k)=cref(kk,k)
- enddo
- enddo
-
- open(icsa_native_int,file=csa_native_int,status="old")
- do m=1,n
- write(icsa_native_int,*) m,e
- write(icsa_native_int,200)
- & (dihang_in(1,k,1,m)*rad2deg,k=2,nres-1)
- write(icsa_native_int,200)
- & (dihang_in(2,k,1,m)*rad2deg,k=2,nres-2)
- write(icsa_native_int,200)
- & (dihang_in(3,k,1,m)*rad2deg,k=2,nres-1)
- write(icsa_native_int,200)
- & (dihang_in(4,k,1,m)*rad2deg,k=2,nres-1)
- enddo
-
- do k=1,nres
- write(icsa_native_int,200) (crefjlee(i,k),i=1,3)
- enddo
- close(icsa_native_int)
-
- 200 format (8f10.4)
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine from_int(n,mm,idum)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.INTERACT'
- include 'COMMON.BANK'
- include 'COMMON.GEO'
- include 'COMMON.CONTACTS'
-#ifdef MOMENT
- include 'COMMON.CONTACTS.MOMENT'
-#endif
- integer ilen
- external ilen
- logical fail
- double precision energia(0:n_ene)
-
- open(icsa_native_int,file=csa_native_int,status="old")
- read (icsa_native_int,*)
- call read_angles(icsa_native_int,*10)
- goto 11
- 10 write (iout,'(2a)') "CHUJ NASTAPIL - error in ",
- & csa_native_int(:ilen(csa_native_int))
- 11 continue
- call intout
- do j=2,nres-1
- dihang_in(1,j,1,1)=theta(j+1)
- dihang_in(2,j,1,1)=phi(j+2)
- dihang_in(3,j,1,1)=alph(j)
- dihang_in(4,j,1,1)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,1)=0.0d0
-
-c read(icsa_native_int,*) ind,e
-c read(icsa_native_int,200) (dihang_in(1,k,1,1),k=2,nres-1)
-c read(icsa_native_int,200) (dihang_in(2,k,1,1),k=2,nres-2)
-c read(icsa_native_int,200) (dihang_in(3,k,1,1),k=2,nres-1)
-c read(icsa_native_int,200) (dihang_in(4,k,1,1),k=2,nres-1)
-c dihang_in(2,nres-1,1,1)=0.d0
-
- maxsi=100
- maxcount_fail=100
-
- do m=mm+2,n
-c do k=2,nres-1
-c dihang_in(1,k,1,m)=dihang_in(1,k,1,1)
-c dihang_in(2,k,1,m)=dihang_in(2,k,1,1)
-c if(abs(dihang_in(3,k,1,1)).gt.1.d-3) then
-c dihang_in(3,k,1,m)=90.d0*ran1(idum)+90.d0
-c endif
-c if(abs(dihang_in(4,k,1,1)).gt.1.d-3) then
-c dihang_in(4,k,1,m)=360.d0*ran1(idum)-180.d0
-c endif
-c enddo
-c call intout
- fail=.true.
-
- icount_fail=0
-
- DO WHILE (FAIL .AND. ICOUNT_FAIL .LE. MAXCOUNT_FAIL)
-
- do i=nnt,nct
- if (itype(i).ne.10) then
-cd print *,'i=',i,' itype=',itype(i),' theta=',theta(i+1)
- fail=.true.
- ii=0
- do while (fail .and. ii .le. maxsi)
- call gen_side(itype(i),theta(i+1),alph(i),omeg(i),fail)
- ii = ii+1
- enddo
- endif
- enddo
- call chainbuild
- call etotal(energia(0))
- fail = (energia(0).ge.1.0d20)
- icount_fail=icount_fail+1
-
- ENDDO
-
- if (icount_fail.gt.maxcount_fail) then
- write (iout,*)
- & 'Failed to generate non-overlaping near-native conf.',
- & m
- endif
-
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,m)=0.0d0
- enddo
-
-c do m=1,n
-c write(icsa_native_int,*) m,e
-c write(icsa_native_int,200) (dihang_in(1,k,1,m),k=2,nres-1)
-c write(icsa_native_int,200) (dihang_in(2,k,1,m),k=2,nres-2)
-c write(icsa_native_int,200) (dihang_in(3,k,1,m),k=2,nres-1)
-c write(icsa_native_int,200) (dihang_in(4,k,1,m),k=2,nres-1)
-c enddo
-c close(icsa_native_int)
-
-c do m=mm+2,n
-c do i=1,4
-c do j=2,nres-1
-c dihang_in(i,j,1,m)=dihang_in(i,j,1,m)*deg2rad
-c enddo
-c enddo
-c enddo
-
- call dihang_to_c(dihang_in(1,1,1,1))
-
-c Store c to cref (they are in COMMON.CHAIN).
- do k=1,2*nres
- do kk=1,3
- crefjlee(kk,k)=c(kk,k)
- enddo
- enddo
-
- call contact(.true.,ncont_ref,icont_ref,co)
-
-c do k=1,nres
-c write(icsa_native_int,200) (crefjlee(i,k),i=1,3)
-c enddo
- close(icsa_native_int)
-
- 200 format (8f10.4)
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine dihang_to_c(aarray)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.CSA'
- include 'COMMON.BANK'
- include 'COMMON.CHAIN'
- include 'COMMON.GEO'
- include 'COMMON.VAR'
-
- dimension aarray(mxang,maxres,mxch)
-
-c do i=4,nres
-c phi(i)=dihang_in(1,i-2,1,1)
-c enddo
- do i=2,nres-1
- theta(i+1)=aarray(1,i,1)
- phi(i+2)=aarray(2,i,1)
- alph(i)=aarray(3,i,1)
- omeg(i)=aarray(4,i,1)
- enddo
-
- call chainbuild
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
projects / unres.git / commitdiff