+++ /dev/null
-BIN=/home/adam/UNRES/bin
-INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-FC= ifort
-OPT = -O3 -ip -w
-FFLAGS = ${OPT} -I.
-CPPFLAGS = -DLINUX
-
-# Next for debugging
-#FC = f77
-#OPT = -g -fbounds-check
-#CPPFLAGS = -DLINUX -DG77
-
-LIBS =
-
-.SUFFIXES: .F
-.F.o:
- $(FC) -c $(CPPFLAGS) $(FFLAGS) $<
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
--- /dev/null
+Makefile_ifort
\ No newline at end of file
+++ /dev/null
-BIN=/home/adam/UNRES/bin
-INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-FC= ifort
-OPT = -O3 -ip -w
-FFLAGS = ${OPT} -I.
-CPPFLAGS = -DLINUX
-
-# Next for debugging
-#FC = f77
-#OPT = -g -fbounds-check
-#CPPFLAGS = -DLINUX -DG77
-
-LIBS =
-
-.SUFFIXES: .F
-.F.o:
- $(FC) -c $(CPPFLAGS) $(FFLAGS) $<
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-BIN=/home/adam/UNRES/CLUSTER/bin
-FC= pgf90
-OPT = -O3
-#OPT = -C -g
-FFLAGS = ${OPT} -I.
-LIBS =
-CPPFLAGS = -DLINUX
-
-.SUFFIXES: .F
-.F.o:
- $(FC) -c $(CPPFLAGS) $(FFLAGS) $<
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
-Makefile-MPICH-ifort
\ No newline at end of file
+Makefile-MPICH-gfortran
\ No newline at end of file
+++ /dev/null
-BIN = /users/adam/ZSCOREZ/bin
-CC = cc
-FC = mpif90
-PGI=/opt/pgi
-OPT = -fast -pc 64 -tp p6 -Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-#FFLAGS = ${OPT} -c -I. -I../src_MD_T/include_unres -I../src_MD
-FFLAGS = ${OPT} -c -I. -I../src_MD_T/include_unres -I../src_MD
-LIBS = -L../../MEY_MD/src_Tc/xdrf -lxdrf
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -m -Bstatic -o ${BIN}/unres_clustMD_MPI-nopteron
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC = ifort
-OPT = -O3 -ip -w
-#OPT = -CB -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T-sccor/include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a -g -d2 -CA -CB
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-oldparm
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN=/users/adam/ZSCOREZ/bin
-OUT=../bin
-FC = ifort
-#OPT = -O3 -ip -w
-OPT = -CB -g
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#CPPFLAGS = -DLINUX -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMPI -DUNRES
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich /users/adam/ZSCOREZ/srcWHAM-Tsccor/xdrf/libxdrf.a
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o gnmr1.o permut.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${OUT}/unres_clustMD_MPI-D-oldparm
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC= pgf90
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -C -g -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -pc 64 -tp amd64
-OPT = -C -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T-sccor/include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-FFLAGS1 = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-#FFLAGS1 = ${OPT} -g -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-#FFLAGS2 = ${OPT1} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich -L../srcWHAM-Tsccor/xdrf -lxdrf
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-new
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC= pgf90
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -C -g -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -pc 64 -tp amd64
-OPT = -C -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T-sccor/include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-FFLAGS1 = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-#FFLAGS1 = ${OPT} -g -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-#FFLAGS2 = ${OPT1} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich -L../srcWHAM-Tsccor/xdrf -lxdrf
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-oldparm
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /usr/local/mpich-1.2.5.2_pgi64-6.0-4_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC= pgf90
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -C -g -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -pc 64 -tp amd64
-#OPT = -C -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-FFLAGS1 = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-#FFLAGS1 = ${OPT} -g -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-#FFLAGS2 = ${OPT1} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust_w.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hcw.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -m -o ${BIN}/unres_clustMD_w_MPI
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
OPT = -O3 -ip -w
#OPT = -CB -g
FFLAGS = ${OPT} -c -I. -Iinclude_unres -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a -g -d2 -CA -CB
+LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a
.c.o:
cc -c -DLINUX -DPGI $*.c
int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
setup_var.o read_ref_str.o gnmr1.o permut.o
-GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
- -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-GAB: $(objects) xdrf/libxdrf.a
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD-mult_MPICH-GAB.exe
+all: no_option
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
-E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
- -DSPLITELE -DLANG0
-E0LL2Y: $(objects) xdrf/libxdrf.a
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD-mult_MPICH-E0LL2Y.exe
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DCLUST -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+GAB: BIN = ../../../../bin/cluster/unres_clustMD-mult_ifort_MPICH_GAB.exe
+GAB: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${object} ${LIBS} -o ${BIN}
+
+4P: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DCLUST -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../../bin/cluster/unres_clustMD-mult_ifort_MPICH_4P.exe
+4P: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${object} ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DCLUST -DSPLITELE -DLANG0
+E0LL2Y: BIN = ../../../../bin/cluster/unres_clustMD-mult_ifort_MPICH_E0LL2Y.exe
+E0LL2Y: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${object} ${LIBS} -o ${BIN}
xdrf/libxdrf.a:
cd xdrf && make
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN=../../../../bin
-FC = ifort
-OPT = -O3 -ip -w
-OPT = -CB -g
-FFLAGS = ${OPT} -c -I. -I./include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich ./xdrf/libxdrf.a -g -d2 -CA -CB
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o gnmr1.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-oldparm
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
--- /dev/null
+Makefile-MPICH-gfortran
\ No newline at end of file
+++ /dev/null
-BIN = /users/adam/ZSCOREZ/bin
-CC = cc
-FC = mpif90
-PGI=/opt/pgi
-OPT = -fast -pc 64 -tp p6 -Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-#FFLAGS = ${OPT} -c -I. -I../src_MD_T/include_unres -I../src_MD
-FFLAGS = ${OPT} -c -I. -I../src_MD_T/include_unres -I../src_MD
-LIBS = -L../../MEY_MD/src_Tc/xdrf -lxdrf
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -m -Bstatic -o ${BIN}/unres_clustMD_MPI-nopteron
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC = ifort
-OPT = -O3 -ip -w
-OPT = -CB -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T-sccor/include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich ../srcWHAM-Tsccor/xdrf/libxdrf.a -g -d2 -CA -CB
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-oldparm
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC= pgf90
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -C -g -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -pc 64 -tp amd64
-OPT = -C -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T-sccor/include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-FFLAGS1 = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-#FFLAGS1 = ${OPT} -g -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-#FFLAGS2 = ${OPT1} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich -L../srcWHAM-Tsccor/xdrf -lxdrf
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-new
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC= pgf90
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -C -g -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -pc 64 -tp amd64
-OPT = -C -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T-sccor/include_unres -I../src_MD_T-sccor -I/users/adam/MEY_MD/src_Tc-czarek -I$(INSTALL_DIR)/include
-FFLAGS1 = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-#FFLAGS1 = ${OPT} -g -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-#FFLAGS2 = ${OPT1} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich -L../srcWHAM-Tsccor/xdrf -lxdrf
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPI-oldparm
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
+++ /dev/null
-INSTALL_DIR = /usr/local/mpich-1.2.5.2_pgi64-6.0-4_ssh
-BIN=/users/adam/ZSCOREZ/bin
-FC= pgf90
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -C -g -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -pc 64 -tp amd64
-#OPT = -C -g
-FFLAGS = ${OPT} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-FFLAGS1 = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-#FFLAGS1 = ${OPT} -g -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-#FFLAGS2 = ${OPT1} -c -I. -I../src_MD_T -I../src_MD -I/users/adam/MEY_MD/src -I$(INSTALL_DIR)/include
-CPPFLAGS = -DLINUX -DPGI -DSPLITELE -DPROCOR -DMP -DMPI
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich
-
-.c.o:
- cc -c -DLINUX -DPGI $*.c
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-
-objects = main_clust_w.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
- geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hcw.o \
- track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
- int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o
-
-unres_clust: $(objects)
- $(FC) ${OPT} ${objects} ${LIBS} -m -o ${BIN}/unres_clustMD_w_MPI
-
-clean:
- /bin/rm *.o
-
-move:
- mv *.o ${OBJ}
INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN=../../../../bin/cluster
FC = ifort
OPT = -O3 -ip -w
#OPT = -CB -g
.F.o:
${FC} ${FFLAGS} ${CPPFLAGS} ${FFLAGS} $*.F
-objects = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
+object = main_clust.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
matmult.o readrtns.o pinorm.o rescode.o intcor.o timing.o misc.o \
geomout.o readpdb.o read_coords.o parmread.o probabl.o fitsq.o hc.o \
track.o wrtclust.o srtclust.o noyes.o contact.o printmat.o \
int_from_cart1.o energy_p_new.o icant.o proc_proc.o work_partition.o \
- setup_var.o read_ref_str.o gnmr1.o
-
-GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
- -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-GAB: $(objects) xdrf/libxdrf.a
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPICH-GAB.exe
-
-E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
- -DSPLITELE -DLANG0
-E0LL2Y: $(objects) xdrf/libxdrf.a
- $(FC) ${OPT} ${objects} ${LIBS} -o ${BIN}/unres_clustMD_MPICH-E0LL2Y.exe
+ setup_var.o read_ref_str.o gnmr1.o ssMD.o
+
+all: no_option
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
+
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DCLUST -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+GAB: BIN = ../../../../bin/cluster/unres_clustMD_ifort_MPICH_GAB.exe
+GAB: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${object} ${LIBS} -o ${BIN}
+
+4P: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DCLUST -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../../bin/cluster/unres_clustMD_ifort_MPICH_4P.exe
+4P: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${object} ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DCLUST -DSPLITELE -DLANG0
+E0LL2Y: BIN = ../../../../bin/cluster/unres_clustMD_ifort_MPICH_E0LL2Y.exe
+E0LL2Y: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${object} ${LIBS} -o ${BIN}
xdrf/libxdrf.a:
cd xdrf && make
-
clean:
/bin/rm -f *.o && /bin/rm -f compinfo && cd xdrf && make clean
-Makefile_GAB
\ No newline at end of file
+Makefile_MPICH_ifort
\ No newline at end of file
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-
-FC= ifort
-
-OPT = -O3 -ip -w
-#OPT = -O0
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_Tc_procor_new_em64_nh_hremd_021811_dfa_csa.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-#INSTALL_DIR = /opt/mpi/mvapich
-INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-#FCL = ${INSTALL_DIR}/bin/mpif77
-#CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../../../bin/unres/CSA/unres_dfa_csa-Yi.exe
-#BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-#LIBS = -L$(INSTALL_DIR)/lib -lmpich
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-#all: unresCSA
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-#unresCSA: ${object}
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo
- ${FC} ${FFLAGS} cinfo.f
-# ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-INSTALL_DIR = /opt/mpi/mvapich
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-FCL = ${INSTALL_DIR}/bin/mpif77
-CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_Tc_procor_new_em64_dfa_csa-4P.exe
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unresCSA: ${object}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS} ${CPPFLAGS} dfa.F
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DG77 -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-INSTALL_DIR = /users/local/mpich2-1.3.1/
-
-
-FC= gfortran
-
-OPT = -O
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -O -I$(INSTALL_DIR)/include
-FFLAGSE = -c -O3 -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_dfa_csa_4P_gfortran.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich -lmpl -lpthread
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-#INSTALL_DIR =/users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_Tc_procor_050711_dfa_csa_4P_800.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT}
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_single-1.2.7p1.exe
-LIBS =
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DMOMENT \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa-CASP3_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o refsys.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
- subroutine make_array
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.INTERACT'
- include 'COMMON.CSA'
-
-ccccccccccccccccccccccccc
-c Level-2: group
-ccccccccccccccccccccccccc
-
- indg=0
- do k=1,numch
-ccccccccccccccccccccccccccccccccccccccccc
-! Groups the THETAs and the GAMMAs
- do j=2,nres-1
- indg=indg+1
- if (j.lt.nres-1) then
- ngroup(indg)=2
- else
- ngroup(indg)=1
- endif
- do i=1,ngroup(indg)
- igroup(1,i,indg)=i
- igroup(2,i,indg)=j
- igroup(3,i,indg)=k
- enddo
- enddo
-ccccccccccccccccccccccccccccccccccccccccc
- enddo
-! Groups the ALPHAs and the BETAs
- do k=1,numch
- do j=2,nres-1
- if(itype(j).ne.10) then
- indg=indg+1
- ngroup(indg)=2
- do i=1,ngroup(indg)
- igroup(1,i,indg)=i+2
- igroup(2,i,indg)=j
- igroup(3,i,indg)=k
- enddo
- endif
- enddo
- enddo
-
- ntotgr=indg
- write(iout,*)
- write(iout,*) "# of groups: ",ntotgr
- do i=1,ntotgr
- write(iout,41) i,ngroup(i),((igroup(k,j,i),k=1,3),j=1,ngroup(i))
- enddo
-! close(iout)
-
- 40 format(i3,3x,3i3)
- 41 format(2i3,3x,6(3i3,2x))
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine make_ranvar(n,m,idum)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.BANK'
-c al m=0
- print *,'HOHOHOHO Make_RanVar!!!!!',n,m
- itrial=0
- do while(m.lt.n .and. itrial.le.10000)
- itrial=itrial+1
- jeden=1
- call gen_rand_conf(jeden,*10)
- call intout
- m=m+1
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,m)=0.0d0
- goto 20
- 10 write (iout,*) 'Failed to generate conformation #',m+1,
- & ' itrial=',itrial
- 20 continue
- enddo
- print *,'Make_RanVar!!!!! m=',m,' itrial=',itrial
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine make_ranvar_reg(n,idum)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.BANK'
- include 'COMMON.GEO'
- m=0
- print *,'HOHOHOHO Make_RanVar_reg!!!!!'
- itrial=0
- do while(m.lt.n .and. itrial.le.10000)
- itrial=itrial+1
- jeden=1
- call gen_rand_conf(jeden,*10)
-! call intout
- m=m+1
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- if(m.le.n*0.1) then
- dihang_in(1,j,1,m)=90.0*deg2rad
- dihang_in(2,j,1,m)=50.0*deg2rad
- endif
- enddo
- dihang_in(2,nres-1,1,m)=0.0d0
- goto 20
- 10 write (iout,*) 'Failed to generate conformation #',m+1,
- & ' itrial=',itrial
- 20 continue
- enddo
- print *,'Make_RanVar!!!!! m=',m,' itrial=',itrial
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine from_pdb(n,idum)
-c This subroutine stores the UNRES int variables generated from
-c subroutine readpdb into the 1st conformation of in dihang_in.
-c Subsequent n-1 conformations of dihang_in have identical values
-c of theta and phi as the 1st conformation but random values for
-c alph and omeg.
-c The array cref (also generated from subroutine readpdb) is stored
-c to crefjlee to be used for rmsd calculation in CSA, if necessary.
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.BANK'
- include 'COMMON.GEO'
-
- m=1
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,k)=0.0d0
-
- do m=2,n
- do k=2,nres-1
- dihang_in(1,k,1,m)=dihang_in(1,k,1,1)
- dihang_in(2,k,1,m)=dihang_in(2,k,1,1)
- if(dabs(dihang_in(3,k,1,1)).gt.1.d-6) then
- dihang_in(3,k,1,m)=90.d0*ran1(idum)+90.d0
- dihang_in(3,k,1,m)=dihang_in(3,k,1,m)*deg2rad
- endif
- if(dabs(dihang_in(4,k,1,1)).gt.1.d-6) then
- dihang_in(4,k,1,m)=360.d0*ran1(idum)-180.d0
- dihang_in(4,k,1,m)=dihang_in(4,k,1,m)*deg2rad
- endif
- enddo
- enddo
-
-c Store cref to crefjlee (they are in COMMON.CHAIN).
- do k=1,2*nres
- do kk=1,3
- crefjlee(kk,k)=cref(kk,k)
- enddo
- enddo
-
- open(icsa_native_int,file=csa_native_int,status="old")
- do m=1,n
- write(icsa_native_int,*) m,e
- write(icsa_native_int,200)
- & (dihang_in(1,k,1,m)*rad2deg,k=2,nres-1)
- write(icsa_native_int,200)
- & (dihang_in(2,k,1,m)*rad2deg,k=2,nres-2)
- write(icsa_native_int,200)
- & (dihang_in(3,k,1,m)*rad2deg,k=2,nres-1)
- write(icsa_native_int,200)
- & (dihang_in(4,k,1,m)*rad2deg,k=2,nres-1)
- enddo
-
- do k=1,nres
- write(icsa_native_int,200) (crefjlee(i,k),i=1,3)
- enddo
- close(icsa_native_int)
-
- 200 format (8f10.4)
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine from_int(n,mm,idum)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.IOUNITS'
- include 'COMMON.CHAIN'
- include 'COMMON.VAR'
- include 'COMMON.INTERACT'
- include 'COMMON.BANK'
- include 'COMMON.GEO'
- include 'COMMON.CONTACTS'
-#ifdef MOMENT
- include 'COMMON.CONTACTS.MOMENT'
-#endif
- integer ilen
- external ilen
- logical fail
- double precision energia(0:n_ene)
-
- open(icsa_native_int,file=csa_native_int,status="old")
- read (icsa_native_int,*)
- call read_angles(icsa_native_int,*10)
- goto 11
- 10 write (iout,'(2a)') "CHUJ NASTAPIL - error in ",
- & csa_native_int(:ilen(csa_native_int))
- 11 continue
- call intout
- do j=2,nres-1
- dihang_in(1,j,1,1)=theta(j+1)
- dihang_in(2,j,1,1)=phi(j+2)
- dihang_in(3,j,1,1)=alph(j)
- dihang_in(4,j,1,1)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,1)=0.0d0
-
-c read(icsa_native_int,*) ind,e
-c read(icsa_native_int,200) (dihang_in(1,k,1,1),k=2,nres-1)
-c read(icsa_native_int,200) (dihang_in(2,k,1,1),k=2,nres-2)
-c read(icsa_native_int,200) (dihang_in(3,k,1,1),k=2,nres-1)
-c read(icsa_native_int,200) (dihang_in(4,k,1,1),k=2,nres-1)
-c dihang_in(2,nres-1,1,1)=0.d0
-
- maxsi=100
- maxcount_fail=100
-
- do m=mm+2,n
-c do k=2,nres-1
-c dihang_in(1,k,1,m)=dihang_in(1,k,1,1)
-c dihang_in(2,k,1,m)=dihang_in(2,k,1,1)
-c if(abs(dihang_in(3,k,1,1)).gt.1.d-3) then
-c dihang_in(3,k,1,m)=90.d0*ran1(idum)+90.d0
-c endif
-c if(abs(dihang_in(4,k,1,1)).gt.1.d-3) then
-c dihang_in(4,k,1,m)=360.d0*ran1(idum)-180.d0
-c endif
-c enddo
-c call intout
- fail=.true.
-
- icount_fail=0
-
- DO WHILE (FAIL .AND. ICOUNT_FAIL .LE. MAXCOUNT_FAIL)
-
- do i=nnt,nct
- if (itype(i).ne.10) then
-cd print *,'i=',i,' itype=',itype(i),' theta=',theta(i+1)
- fail=.true.
- ii=0
- do while (fail .and. ii .le. maxsi)
- call gen_side(itype(i),theta(i+1),alph(i),omeg(i),fail)
- ii = ii+1
- enddo
- endif
- enddo
- call chainbuild
- call etotal(energia(0))
- fail = (energia(0).ge.1.0d20)
- icount_fail=icount_fail+1
-
- ENDDO
-
- if (icount_fail.gt.maxcount_fail) then
- write (iout,*)
- & 'Failed to generate non-overlaping near-native conf.',
- & m
- endif
-
- do j=2,nres-1
- dihang_in(1,j,1,m)=theta(j+1)
- dihang_in(2,j,1,m)=phi(j+2)
- dihang_in(3,j,1,m)=alph(j)
- dihang_in(4,j,1,m)=omeg(j)
- enddo
- dihang_in(2,nres-1,1,m)=0.0d0
- enddo
-
-c do m=1,n
-c write(icsa_native_int,*) m,e
-c write(icsa_native_int,200) (dihang_in(1,k,1,m),k=2,nres-1)
-c write(icsa_native_int,200) (dihang_in(2,k,1,m),k=2,nres-2)
-c write(icsa_native_int,200) (dihang_in(3,k,1,m),k=2,nres-1)
-c write(icsa_native_int,200) (dihang_in(4,k,1,m),k=2,nres-1)
-c enddo
-c close(icsa_native_int)
-
-c do m=mm+2,n
-c do i=1,4
-c do j=2,nres-1
-c dihang_in(i,j,1,m)=dihang_in(i,j,1,m)*deg2rad
-c enddo
-c enddo
-c enddo
-
- call dihang_to_c(dihang_in(1,1,1,1))
-
-c Store c to cref (they are in COMMON.CHAIN).
- do k=1,2*nres
- do kk=1,3
- crefjlee(kk,k)=c(kk,k)
- enddo
- enddo
-
- call contact(.true.,ncont_ref,icont_ref,co)
-
-c do k=1,nres
-c write(icsa_native_int,200) (crefjlee(i,k),i=1,3)
-c enddo
- close(icsa_native_int)
-
- 200 format (8f10.4)
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
- subroutine dihang_to_c(aarray)
- implicit real*8 (a-h,o-z)
- include 'DIMENSIONS'
- include 'COMMON.CSA'
- include 'COMMON.BANK'
- include 'COMMON.CHAIN'
- include 'COMMON.GEO'
- include 'COMMON.VAR'
-
- dimension aarray(mxang,maxres,mxch)
-
-c do i=4,nres
-c phi(i)=dihang_in(1,i-2,1,1)
-c enddo
- do i=2,nres-1
- theta(i+1)=aarray(1,i,1)
- phi(i+2)=aarray(2,i,1)
- alph(i)=aarray(3,i,1)
- omeg(i)=aarray(4,i,1)
- enddo
-
- call chainbuild
-
- return
- end
-ccccccccccccccccccccccccccccccccccccccccccccccccc
-ccccccccccccccccccccccccccccccccccccccccccccccccc
enddo
call flush(iout)
endif
- write (2,*) "Start reading THETA_PDB"
+c write (2,*) "Start reading THETA_PDB"
do i=1,ntyp
read (ithep_pdb,*,err=111,end=111) a0thet(i),(athet(j,i),j=1,2),
& (bthet(j,i),j=1,2)
include 'COMMON.MCM'
c include 'COMMON.MAP'
include 'COMMON.HEADER'
-c include 'COMMON.CSA'
+ include 'COMMON.CSA'
include 'COMMON.CHAIN'
c include 'COMMON.MUCA'
c include 'COMMON.MD'
-Makefile-DFA-NEWPARM.matrix
\ No newline at end of file
+Makefile_MPICH_ifort
\ No newline at end of file
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-
-FC= ifort
-
-OPT = -O3 -ip -w
-#OPT = -O0
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_Tc_procor_new_em64_nh_hremd_021811_dfa_csa.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-#INSTALL_DIR = /opt/mpi/mvapich
-#INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-#FCL = ${INSTALL_DIR}/bin/mpif77
-#CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../../../bin/unres/CSA/unres_dfa_csa-Yi.exe
-#BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-#LIBS = -L$(INSTALL_DIR)/lib -lmpich
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-#all: unresCSA
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-#unresCSA: ${object}
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo
- ${FC} ${FFLAGS} cinfo.f
-# ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-#INSTALL_DIR = /opt/mpi/mvapich
-INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-#FCL = ${INSTALL_DIR}/bin/mpif77
-#CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../../../bin/unres/CSA/unres_dfa_csa-Yi.exe
-#BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-#LIBS = -L$(INSTALL_DIR)/lib -lmpich
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-#all: unresCSA
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-#unresCSA: ${object}
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo
- ${FC} ${FFLAGS} cinfo.f
-# ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-INSTALL_DIR = /opt/mpi/mvapich
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-FCL = ${INSTALL_DIR}/bin/mpif77
-CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_Tc_procor_new_em64_dfa_csa-4P.exe
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unresCSA: ${object}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS} ${CPPFLAGS} dfa.F
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DG77 -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-INSTALL_DIR = /users/local/mpich2-1.3.1/
-
-
-FC= gfortran
-
-OPT = -O
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -O -I$(INSTALL_DIR)/include
-FFLAGSE = -c -O3 -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_dfa_csa_4P_gfortran.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich -lmpl -lpthread
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-#INSTALL_DIR =/users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_Tc_procor_050711_dfa_csa_4P_800.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /usr/local/mpich-1.2.7p1-intel
-INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT}
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_single-1.2.7p1.exe
-LIBS =
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
+++ /dev/null
-CPPFLAGS = -DLINUX -DPGI -DISNAN -DMP -DMPI -DUNRES \
- -DSPLITELE -DAMD64 -DLANG0 -DMOMENT \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -O0 -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGS3 = -c -w -O3 -mp
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../../../bin/unres/CSA/unres_csa-CASP3_ifort_mpich-1.2.7p1.exe
-LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres_csa.o arcos.o cartprint.o chainbuild.o initialize_p.o \
- matmult.o readrtns_csa.o parmread.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout_min.o readpdb.o \
- intcartderiv.o \
- MP.o printmat.o convert.o int_to_cart.o \
- dfa.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o prng_32.o contact.o gen_rand_conf.o \
- sc_move.o test.o local_move.o rmsd.o fitsq.o elecont.o djacob.o \
- distfit.o banach.o TMscore_subroutine.o minim_mult.o
-
-unres: ${object}
-# cc -o compinfo compinfo.c
-# ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS3} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-dfa.o : dfa.F
- ${FC} -mp ${FFLAGS3} ${CPPFLAGS} dfa.F
-
-
-
C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 2 4 3232
+C 2 4 3233
subroutine cinfo
include 'COMMON.IOUNITS'
write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version CSA and DFA only'
+ write(iout,*)'Version 2.4 build 3233'
+ write(iout,*)'compiled Thu Nov 27 10:08:50 2014'
+ write(iout,*)'compiled by adam@mmka'
+ write(iout,*)'OS name: Linux '
+ write(iout,*)'OS release: 3.2.0-72-generic '
+ write(iout,*)'OS version:',
+ & ' #107-Ubuntu SMP Thu Nov 6 14:24:01 UTC 2014 '
+ write(iout,*)'flags:'
+ write(iout,*)'INSTALL_DIR = /users/software/mpich-1.2.7p1_int...'
+ write(iout,*)'FC= ifort'
+ write(iout,*)'OPT = -O3 -ip '
+ write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include '
+ write(iout,*)'FFLAGS1 = -c -g -CA -CB -I$(INSTALL_DIR)/inclu...'
+ write(iout,*)'FFLAGS2 = -c -g -O0 -I$(INSTALL_DIR)/include '
+ write(iout,*)'FFLAGSE = -c -O3 -ipo -opt_report -I$(INSTALL...'
+ write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich '
+ write(iout,*)'ARCH = LINUX'
+ write(iout,*)'PP = /lib/cpp -P'
+ write(iout,*)'object = unres_csa.o arcos.o cartprint.o chainb...'
+ write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 ...'
+ write(iout,*)'GAB: BIN = ../../../bin/unres/CSA/unres_csa-DL_...'
+ write(iout,*)'LIBS = -lpthread -L$(INSTALL_DIR)/lib -lmpich'
+ write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD...'
+ write(iout,*)'E0LL2Y: BIN = ../../../bin/unres/CSA/unres_csa-...'
+ write(iout,*)'4P: CPPFLAGS = -DLINUX -DPGI -DISNAN -DMP -DMPI...'
+ write(iout,*)'4P: BIN = ../../../bin/unres/CSA/unres_csa-DL_i...'
+ write(iout,*)'++++ End of compile info ++++'
return
end
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w
-
-CFLAGS = -DSGI -c
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../../../bin/unres/MD/unres_Tc_procor_oldparm_em64-D-symetr.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich ../../lib/xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o permut.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o ssMD.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-#${FC} ${OPT} -Wl,-M ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-permut.o : permut.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} permut.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-add.o: add.f
- ${FC} ${FFLAGS2} add.f
-
-blas.o: blas.f
- ${FC} ${FFLAGS2} blas.f
-
-eigen.o: eigen.f
- ${FC} ${FFLAGS2} eigen.f
+++ /dev/null
-#CPPFLAGS = -WF,-DOLD_GINV \
- -WF,-DUNRES -WF,-DMP -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DISNAN \
- -WF,-DAIX -WF,-DLANG0 -WF,-DPROCOR
-#
-INSTALL_DIR = /opt/mpich-pgi
-CC = cc
-FC=mpif90
-PGI=/opt/pgi
-#OPT = -fast -pc 64 -tp p6 \
-#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-OPT = -fast
-
-OPT1 = -fast
-#OPT = -C -g
-#OPT1 = -C -g
-
-# -Mvect <---slows down
-# -Minline=name:matmat2 <---false convergence
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-FFLAGS2 = ${FFLAGS}
-
-BIN = /home/aliwo/UNRES/MD/bin/unres_MD_Tc-new-fg.exe
-LIBS = ../src_Tc_cache/xdrf_new/libxdrf.a
-#LIBS=-lmpichfsup
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI -DSPLITELE -DPROCOR -DOLD_GINV -DLANG0
-CFLAGS = -DLINUX -DPGI -c
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-FC1=/bgsys/drivers/ppcfloor/comm/bin/mpixlf77
-FC=tau_f90.sh
-OPT = -O3 -qarch=450 -qtune=450 -qfixed
-#OPT = -O3 -qarch=450 -qtune=450 -qdebug=function_trace -qfixed
-#OPT = -O -qarch=450 -qtune=450 -qfixed
-#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
-#-Mprefetch=distance:8,nta
-
-#OPT = -O0 -C -g -qarch=450 -qtune=450 -qfixed
-OPT1 = -O0 -g -qarch=450 -qtune=450 -qfixed
-OPT2 = -O2 -qarch=450 -qtune=450 -qfixed
-#OPT2 = -O2 -qarch=450 -qtune=450 -qdebug=function_trace -qfixed
-#OPT2 = ${OPT}
-OPTE = -O4 -qarch=450 -qtune=450 -qfixed
-#OPTE = -O4 -qarch=450 -qtune=450 -qdebug=function_trace -qfixed
-#OPTE=${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_MD_Tc_procor-newparm-gnivpar-O4-test.exe
-#LIBS = xdrf/libxdrf.a /home/liwo/UNRES/LIB/libmemmon.a
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -WF,-DAIX -WF,-DISNAN -WF,-DUNRES -WF,-DMP -WF,-DMPI -WF,-DPGI \
- -WF,-DSPLITELE -WF,-DPROCOR -WF,-DAMD64 -WF,-DLANG0
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- ${CC} -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} --print-map ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o; /bin/rm *.pp.*
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} rmdd.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} add.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-compinfo: compinfo.o
- ${CC} ${CFLAGS} compfinfo.c
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-prng_32.o: prng_32.F
- ${FC} -qfixed -O0 prng_32.F
-
-prng.o: prng.f
- ${FC1} ${FFLAGS} prng.f
-
-readrtns_CSA.o: readrtns_CSA.F
- ${FC1} ${FFLAGS} ${CPPFLAGS} readrtns_CSA.F
-
-gen_rand_conf.o: gen_rand_conf.F
- ${FC1} ${FFLAGS} ${CPPFLAGS} gen_rand_conf.F
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = unres_Tc_procor_new_em64-fg.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-CFLAGS = -DSGI -c
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-#FFLAGS = -c -C -g -I$(INSTALL_DIR)/include
-#FFLAGS1 = -c -g -I$(INSTALL_DIR)/include
-#FFLAGS2 = -c -C -g -I$(INSTALL_DIR)/include
-#FFLAGSE = -c -C -g -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_Tc_procor_em64-D-finegrain.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS} add.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w
-
-CFLAGS = -DSGI -c
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_Tc_procor_oldparm_em64-D-finegrain.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} -Wl,-M ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-INSTALL_DIR = /opt/mpi/mvapich
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-FCL = ${INSTALL_DIR}/bin/mpif77
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = unres_Tc_procor_new_em64-oldparm.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure3.o econstr_local.o gnmr1.o check_sc_map.o check_bond.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} -static-libcxa ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
- mv ${BIN} ../bin
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-readrtns_CSA.o : readrtns_CSA.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} readrtns_CSA.F
-
-MREMD.o : MREMD.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} MREMD.F
-
+++ /dev/null
-#
-FC= ifort
-FCL = ${INSTALL_DIR}/bin/mpif77
-CC = cc
-
-CFLAGS = -c
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
-
-BIN = ../bin/restbin2asc
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: restbin2asc
-
-obj: ${object}
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = restbin2asc.o
-
-restbin2asc: ${object}
- ${FC} ${OPT} ${object} ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
+++ /dev/null
-#
-#include TAU_MAKEFILE ${TAU_ROOT_DIR}/xt3/lib/Makefile.tau-mpi-pdt-pgi
-TAU_MAKEFILE=/usr/local/packages/TAU-2.17/tau-2.17/xt3/lib/Makefile.tau-mpi-pdt-pgi
-FC=tau_f90.sh
-OPT = -fast -pc 64 -tp p6
-#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
-#-Mprefetch=distance:8,nta
-
-OPT1 = -fast -pc 64 -tp p6
-OPT2 = -fast -pc 64 -tp p6
-OPTE = -fast -pc 64 -tp p6
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_MD_Tc_procor-newparm-gnivpar-tau.exe
-#LIBS = xdrf/libxdrf.a /home/liwo/UNRES/LIB/libmemmon.a
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DAIX -DISNAN -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- ${CC} -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o; /bin/rm *.pp.*
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} rmdd.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} add.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-compinfo: compinfo.o
- ${CC} ${CFLAGS} compfinfo.c
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-prng_32.o: prng_32.F
- ${FC} -qfixed -O0 prng_32.F
-
-prng.o: prng.f
- ${FC} ${FFLAGS} prng.f
-
-readrtns_CSA.o: readrtns_CSA.F
- ${FC} ${FFLAGS} ${CPPFLAGS} readrtns_CSA.F
-
-gen_rand_conf.o: gen_rand_conf.F
- ${FC} ${FFLAGS} ${CPPFLAGS} gen_rand_conf.F
+++ /dev/null
-#****************************************************************************
-#* TAU Portable Profiling Package **
-#* http://www.cs.uoregon.edu/research/tau **
-#****************************************************************************
-#* Copyright 1997-2002 **
-#* Department of Computer and Information Science, University of Oregon **
-#* Advanced Computing Laboratory, Los Alamos National Laboratory **
-#****************************************************************************
-#######################################################################
-## pC++/Sage++ Copyright (C) 1993,1995 ##
-## Indiana University University of Oregon University of Rennes ##
-#######################################################################
-
-#######################################################################
-# This is a sample Makefile that contains the Profiling and Tracing
-# options. Makefiles of other applications and libraries (not included
-# in this distribution) should include this Makefile.
-# It defines the following variables that should be added to CFLAGS
-# TAU_INCLUDE - Include path for tau headers
-# TAU_DEFS - Defines that are needed for tracing and profiling only.
-# And for linking add to LIBS
-# TAU_LIBS - TAU Tracing and Profiling library libprof.a
-#
-# When the user needs to turn off tracing and profiling and run the
-# application without any runtime overhead of instrumentation, simply
-# remove TAUDEFS and TAULIBS from CFLAGS and LIBS respectively but keep
-# TAUINC.
-#######################################################################
-
-########### Automatically modified by the configure script ############
-CONFIG_ARCH=bgp
-TAU_ARCH=bgp
-CONFIG_CC=bgxlc_r
-CONFIG_CXX=bgxlC_r
-TAU_CC_FE=$(CONFIG_CC)
-TAU_CXX_FE=$(CONFIG_CXX)
-
-# Front end C/C++ Compilers
-#BGL#TAU_CC_FE=xlc #ENDIF#
-#BGL#TAU_CXX_FE=xlC #ENDIF#
-TAU_CC_FE=xlc #ENDIF##BGP#
-TAU_CXX_FE=xlC #ENDIF##BGP#
-#CATAMOUNT#TAU_CC_FE=gcc #ENDIF#
-#CATAMOUNT#TAU_CXX_FE=g++ #ENDIF#
-#SC_GFORTRAN#TAU_CC_FE=gcc #ENDIF#
-#SC_GFORTRAN#TAU_CXX_FE=g++ #ENDIF#
-#SC_PATHSCALE#TAU_CC_FE=gcc #ENDIF#
-#SC_PATHSCALE#TAU_CXX_FE=g++ #ENDIF#
-
-PCXX_OPT=-g
-USER_OPT=
-EXTRADIR=/opt/ibmcmp/xlf/bg/11.1/bin/..
-EXTRADIRCXX=/opt/ibmcmp/vacpp/bg/9.0/bin/..
-TAUROOT=/soft/apps/tau/tau_latest
-TULIPDIR=
-TAUEXTRASHLIBOPTS=
-TAUGCCLIBOPTS=
-TAUGCCLIBDIR=
-TAUGFORTRANLIBDIR=
-PCLDIR=
-PAPIDIR=
-PAPISUBDIR=
-CHARMDIR=
-PDTDIR=/soft/apps/tau/pdtoolkit-3.12
-PDTCOMPDIR=
-DYNINSTDIR=
-JDKDIR=
-SLOG2DIR=
-OPARIDIR=
-TAU_OPARI_TOOL=
-EPILOGDIR=
-EPILOGBINDIR=
-EPILOGINCDIR=
-EPILOGLIBDIR=
-EPILOGEXTRALINKCMD=
-VAMPIRTRACEDIR=
-KTAU_INCDIR=
-KTAU_INCUSERDIR=
-KTAU_LIB=
-KTAU_KALLSYMS_PATH=
-PYTHON_INCDIR=
-PYTHON_LIBDIR=
-PERFINCDIR=
-PERFLIBDIR=
-PERFLIBRARY=
-TAU_SHMEM_INC=
-TAU_SHMEM_LIB=
-TAU_CONFIG=-mpi-pdt
-TAU_MPI_INC=-I/bgsys/drivers/ppcfloor/comm/include
-TAU_MPI_LIB=-L/soft/apps/tau/tau_latest/bgp/lib -lTauMpi$(TAU_CONFIG) -L/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPI_FLIB=-lfmpich.cnk -L/soft/apps/tau/tau_latest/bgp/lib -lTauMpi$(TAU_CONFIG) -L/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPILIB_DIR=/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPI_NOWRAP_LIB= -L/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPI_NOWRAP_FLIB=-lfmpich.cnk -L/bgsys/drivers/ppcfloor/comm/lib
-FULL_CXX=mpixlcxx_r
-FULL_CC=mpixlc_r
-TAU_PREFIX_INSTALL_DIR=/soft/apps/tau/tau_latest
-
-TAU_BIN_DIR=$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/bin
-TAU_INC_DIR=$(TAU_PREFIX_INSTALL_DIR)/include
-TAU_LIB_DIR=$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/lib
-
-#######################################################################
-
-#OPARI#TAU_OPARI_TOOL=$(TAU_BIN_DIR)/opari #ENDIF#
-#ENABLE64BIT#ABI = -64 #ENDIF#
-#ENABLEN32BIT#ABI = -n32 #ENDIF#
-#ENABLE32BIT#ABI = -32 #ENDIF#
-
-#######################################################################
-#SP1#IBM_XLC_ABI = -q32 #ENDIF#
-#SP1#IBM_GNU_ABI = -maix32 #ENDIF#
-#IBM64#IBM_XLC_ABI = -q64 #ENDIF#
-#IBM64#IBM_GNU_ABI = -maix64 #ENDIF#
-#IBM64LINUX#IBM_XLC_ABI = -q64 #ENDIF#
-#IBM64LINUX#IBM_GNU_ABI = -m64 #ENDIF#
-#SUNX86_64#SUN_GNU_ABI = -m64 #ENDIF#
-#SUNX86_64#SUN_CC_ABI = -xarch=amd64 #ENDIF#
-#MIPS32LINUX#SC_GNU_ABI = -mabi=n32 #ENDIF#
-#MIPS32LINUX#SC_PATH_ABI = -n32 #ENDIF#
-#MIPS64LINUX#SC_GNU_ABI = -mabi=64 #ENDIF#
-#MIPS64LINUX#SC_PATH_ABI = -64 #ENDIF#
-#GNU#SC_ABI = $(SC_GNU_ABI) #ENDIF#
-#USE_PATHCC#SC_ABI = $(SC_PATH_ABI) #ENDIF#
-#MIPS32#ABI = $(SC_ABI) #ENDIF#
-#MIPS64#ABI = $(SC_ABI) #ENDIF#
-
-IBM_ABI = $(IBM_XLC_ABI) #ENDIF##USE_IBMXLC#
-#GNU#IBM_ABI = $(IBM_GNU_ABI) #ENDIF#
-#SP1# ABI = $(IBM_ABI) #ENDIF#
-#PPC64# ABI = $(IBM_ABI) #ENDIF#
-#SOLARIS64#SUN_GNU_ABI = -mcpu=v9 -m64 #ENDIF#
-#SOLARIS64#SUN_CC_ABI = -xarch=v9 -xcode=pic32 #ENDIF#
-#SOL2CC#SUN_ABI = $(SUN_CC_ABI) #ENDIF#
-#GNU#SUN_ABI = $(SUN_GNU_ABI) #ENDIF#
-#SOL2#ABI = $(SUN_ABI) #ENDIF#
-#SUNX86_64#ABI = $(SUN_ABI) #ENDIF#
-#FORCEIA32#ABI = -m32#ENDIF#
-#######################################################################
-F90_ABI = $(ABI)
-#IBM64_FORTRAN#F90_ABI = -q64 #ENDIF#
-#######################################################################
-
-############# Standard Defines ##############
-TAU_CC = $(CONFIG_CC) $(ABI) $(ISA)
-TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT)
-TAU_RUN_CC = $(FULL_CC) $(ABI) $(ISA)
-TAU_RUN_CXX = $(FULL_CXX) $(ABI) $(ISA)
-TAU_INSTALL = /bin/cp
-TAU_SHELL = /bin/sh
-LSX = .a
-#############################################
-# JAVA DEFAULT ARCH
-#############################################
-JDKARCH = linux
-#COMPAQ_ALPHA#JDKARCH = alpha #ENDIF#
-#SOL2#JDKARCH = solaris #ENDIF#
-#SGIMP#JDKARCH = irix #ENDIF#
-#SP1#JDKARCH = aix #ENDIF#
-#T3E#JDKARCH = cray #ENDIF#
-#############################################
-# JAVA OBJECTS
-#############################################
-#JAVA#TAU_JAVA_O = TauJava.o TauJAPI.o #ENDIF#
-#JAVA#TAUJAPI = Profile.class #ENDIF#
-
-
-#############################################
-# OpenMP OBJECTS
-#############################################
-#OPENMP#OPENMP_O = OpenMPLayer.o #ENDIF#
-
-#############################################
-# Opari OBJECTS
-#############################################
-#OPARI#OPARI_O = TauOpari.o #ENDIF#
-#KOJAKOPARI#OPARI_O = TauKojakOpari.o #ENDIF#
-#EPILOG#OPARI_O = #ENDIF#
-#VAMPIRTRACE#OPARI_O = #ENDIF#
-#GNU#OPARI_O = #ENDIF#
-
-#############################################
-# CallPath OBJECTS
-#############################################
-#PROFILECALLPATH#CALLPATH_O = TauCallPath.o #ENDIF#
-#PROFILEPARAM#PARAM_O = ProfileParam.o #ENDIF#
-
-#############################################
-# Python Binding OBJECTS
-#############################################
-#PYTHON#PYTHON_O = PyGroups.o PyExceptions.o PyDatabase.o PyBindings.o PyTimer.o PyTau.o #ENDIF#
-
-#############################################
-# DYNINST DEFAULT ARCH
-#############################################
-DYNINST_PLATFORM = $(PLATFORM)
-
-
-#PCL##include $(TAU_INC_DIR)/makefiles/PCLMakefile.stub #ENDIF#
-
-############# OpenMP Fortran Option ########
-#OPENMP#TAU_F90_OPT = -mp #ENDIF#
-#SOL2CC_OPENMP#TAU_F90_OPT = -xopenmp #ENDIF#
-#SUNCC_OPENMP#TAU_F90_OPT = -xopenmp=parallel #ENDIF#
-#COMPAQCXX_OPENMP#TAU_F90_OPT = -omp #ENDIF#
-#IBMXLC_OPENMP#TAU_F90_OPT = -qsmp=omp #ENDIF#
-#GUIDE#TAU_F90_OPT = #ENDIF#
-#PGIOPENMP#TAU_F90_OPT = -mp #ENDIF#
-#INTELOPENMP#TAU_F90_OPT = -openmp #ENDIF#
-#HITACHI_OPENMP#TAU_F90_OPT = #ENDIF#
-
-TAU_R =_r #ENDIF##THREADSAFE_COMPILERS#
-
-############# Fortran Compiler #############
-#GNU_FORTRAN#TAU_F90 = g77 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#GNU_GFORTRAN#TAU_F90 = gfortran $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#G95_FORTRAN#TAU_F90 = g95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SC_GFORTRAN#TAU_F90 = scgfortran $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SGI_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-TAU_F90 = xlf77$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF##IBM_FORTRAN#
-TAU_F90 = mpixlf77$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF##BGP#
-#BGL#TAU_F90 = blrts_xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBM64_FORTRAN#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBMXLFAPPLE#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAY_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAY_X1_FORTRAN#TAU_F90 = ftn $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PGI_FORTRAN#TAU_F90 = pgf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAYCNL#TAU_F90 = ftn $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PGI_CATAMOUNT#TAU_F90 = qk-pgf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#ABSOFT_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#LAHEY_FORTRAN#TAU_F90 = lf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#LAHEY64_FORTRAN#TAU_F90 = lf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#NAGWARE_FORTRAN#TAU_F90 = f95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#FUJITSU_FORTRAN#TAU_F90 = F90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#FUJITSU_SOLARIS#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SUN_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#COMPAQ_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#KAI_FORTRAN#TAU_F90 = guidef90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#HP_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#HITACHI_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTEL_FORTRAN#TAU_F90 = efc $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTEL32_FORTRAN#TAU_F90 = ifc $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTELIFORT#TAU_F90 = ifort $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PATHSCALE_FORTRAN#TAU_F90 = pathf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SC_PATHSCALE#TAU_F90 = scpathf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#OPEN64ORC_FORTRAN#TAU_F90 = orf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#NEC_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-
-
-############# Portable F90 Options #############
-#IBM64_FORTRAN#TAU_F90_FIXED = -qfixed #ENDIF#
-TAU_F90_FIXED = -qfixed #ENDIF##IBM_FORTRAN#
-TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF##IBM_FORTRAN#
-#IBMXLFAPPLE#TAU_F90_FIXED = -qfixed #ENDIF#
-#IBMXLFAPPLE#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-#IBM64_FORTRAN#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-
-############# Profiling Options #############
-PROFILEOPT1 = -DPROFILING_ON #ENDIF##PROFILE#
-#PCL#PROFILEOPT3 = -DTAU_PCL -I$(PCLDIR)/include #ENDIF#
-#PAPI#PROFILEOPT3 = -DTAU_PAPI -I$(PAPIDIR)/src -I$(PAPIDIR)/include #ENDIF#
-#PCL#PCL_O = PclLayer.o #ENDIF#
-#PAPI#PAPI_O = PapiLayer.o #ENDIF#
-#MULTIPLECOUNTERS#MULT_O = MultipleCounters.o #ENDIF#
-#PROFILECALLS#PROFILEOPT4 = -DPROFILE_CALLS #ENDIF#
-#PROFILESTATS#PROFILEOPT5 = -DPROFILE_STATS #ENDIF#
-#DEBUGPROF#PROFILEOPT6 = -DDEBUG_PROF #ENDIF#
-PROFILEOPT7 = -DTAU_STDCXXLIB #ENDIF##STDCXXLIB#
-#CRAYX1CC#PROFILEOPT7 = #ENDIF#
-#CRAYCC#PROFILEOPT7 = #ENDIF#
-#INTELTFLOP#PROFILEOPT8 = -DPOOMA_TFLOP #ENDIF#
-#NORTTI#PROFILEOPT9 = -DNO_RTTI #ENDIF#
-#RTTI#PROFILEOPT9 = -DRTTI #ENDIF#
-#GNU#PROFILEOPT10 = -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#APPLECXX#PROFILEOPT10 = -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#SOL2CC#PROFILEOPT10 = -DTAU_SOL2CC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SUNCC#PROFILEOPT10 = -DTAU_SOL2CC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_PATHCC#PROFILEOPT10 = -DTAU_DOT_H_LESS_HEADERS -fPIC -DTAU_PATHSCALE #ENDIF#
-#OPEN64ORC#PROFILEOPT10 = -DTAU_DOT_H_LESS_HEADERS -DTAU_OPEN64ORC -fpic #ENDIF#
-#CALLSTACK#PROFILEOPT11 = -DPROFILE_CALLSTACK #ENDIF#
-#PGI1.7#PROFILEOPT12 = -DPGI #ENDIF#
-#CRAYKAI#PROFILEOPT12 = -DCRAYKAI #ENDIF#
-#HP_FORTRAN#PROFILEOPT12 = -DHP_FORTRAN #ENDIF#
-#CRAYCC#PROFILEOPT13 = -h instantiate=used -DCRAYCC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#CRAYX1CC#PROFILEOPT13 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SGICC#TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT) -LANG:std #ENDIF#
-#INTELCXXLIBICC#TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT) -cxxlib-icc #ENDIF#
-#PTHREAD_AVAILABLE#PROFILEOPT15 = -DPTHREADS #ENDIF#
-#COMPAQCXX_PTHREAD#PROFILEOPT15 = -DPTHREADS -pthread #ENDIF#
-#TAU_SPROC#PROFILEOPT15 = -DTAU_SPROC #ENDIF#
-#TAU_PAPI_THREADS#PROFILEOPT15 = -DTAU_PAPI_THREADS #ENDIF#
-#TULIPTHREADS#PROFILEOPT16 = -DTULIPTHREADS #ENDIF#
-#TRACE#TRACEOPT = -DTRACING_ON #ENDIF#
-#TRACE#EVENTS_O = Tracer.o #ENDIF#
-#KTAU#KTAU_O = TauKtau.o KtauProfiler.o KtauSymbols.o #ENDIF#
-#KTAU_MERGE#KTAU_MERGE_O = KtauFuncInfo.o KtauMergeInfo.o ktau_syscall.o #ENDIF#
-#KTAU_SHCTR#KTAU_SHCTR_O = KtauCounters.o #ENDIF#
-#MPITRACE#TRACEOPT = -DTAU_MPITRACE -DTRACING_ON #ENDIF#
-#MPITRACE#EVENTS_O = Tracer.o #ENDIF#
-#MUSE#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#MUSE_EVENT#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#MUSE_MULTIPLE#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#COMPENSATE#COMPENSATE_O = TauCompensate.o #ENDIF#
-#PTHREAD_AVAILABLE#THR_O = PthreadLayer.o #ENDIF#
-#TAU_PAPI_THREADS#THR_O = PapiThreadLayer.o #ENDIF#
-#TAU_SPROC#THR_O = SprocLayer.o #ENDIF#
-#JAVA#THR_O = JavaThreadLayer.o #ENDIF#
-#TULIPTHREADS#THR_O = TulipThreadLayer.o #ENDIF#
-#LINUXTIMERS#PLATFORM_O = TauLinuxTimers.o #ENDIF#
-#TULIPTHREADS#PROFILEOPT17 = -I$(TULIPDIR)/include -I$(TULIPDIR)/Tuliplib #ENDIF#
-#SMARTS#PROFILEOPT17 = -I$(TULIPDIR)/include -I$(TULIPDIR)/lib -I$(TULIPDIR)/machine-specific/$(HOSTTYPE) #ENDIF#
-#SMARTS#PROFILEOPT18 = -DSMARTS #ENDIF#
-#KAI#PROFILEOPT19 = -DKAI -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_DECCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SGICC#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_INTELCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#USE_NECCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#PGI#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#ACC#PROFILEOPT19 = -AA +z -DTAU_DOT_H_LESS_HEADERS -DTAU_HPUX #ENDIF#
-#FUJITSU#PROFILEOPT19 = -DFUJITSU -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#KAINOEX#PROFILEOPT20 = --no_exceptions #ENDIF#
-#SGICCNOEX#PROFILEOPT20 = -LANG:exceptions=off #ENDIF#
-#HPGNU#PROFILEOPT21 = -fPIC #ENDIF#
-#HITACHI#PROFILEOPT21 = -DTAU_HITACHI #ENDIF#
-#SP1#PROFILEOPT21 = -D_POSIX_SOURCE -DTAU_AIX #ENDIF#
-#PPC64#TAU_PIC_PROFILEOPT21 = -qpic=large #ENDIF#
-#BGL#TAU_PIC_PROFILEOPT21 = #ENDIF#
-PROFILEOPT21 = -DTAU_DOT_H_LESS_HEADERS -DTAU_XLC $(TAU_PIC_PROFILEOPT21) #ENDIF##USE_IBMXLC#
-#IBMXLCAPPLE#PROFILEOPT21 = -DTAU_DOT_H_LESS_HEADERS -DTAU_XLC -DTAU_APPLE_XLC #ENDIF#
-#PCLPTHREAD#PROFILEOPT22 = -DPCL_MUTEX_LOCK #ENDIF#
-#JAVA#PROFILEOPT23 = -DJAVA #ENDIF#
-#MONITOR#PROFILEOPT24 = -DMONITORING_ON #ENDIF#
-#JAVA#PROFILEOPT25 = -I$(JDKDIR)/include -I$(JDKDIR)/include/$(JDKARCH) #ENDIF#
-PROFILEOPT26 = -DTAU_MPI #ENDIF##MPI#
-PROFILEOPT26 = -DTAU_MPI -DTAU_MPI_THREADED #ENDIF##MPI_THREADED#
-#OPENMP#PROFILEOPT27 = -mp -DTAU_OPENMP#ENDIF#
-#GNU#PROFILEOPT27 = #ENDIF#
-#SOL2CC_OPENMP#PROFILEOPT27 = -xopenmp -DTAU_OPENMP#ENDIF#
-#SUNCC_OPENMP#PROFILEOPT27 = -xopenmp=parallel -DTAU_OPENMP#ENDIF#
-#SUNCC_OPENMP#PROFILEOPT27 = -xopenmp=parallel -DTAU_OPENMP#ENDIF#
-#HITACHI_OPENMP#PROFILEOPT27 = -DTAU_OPENMP#ENDIF#
-#COMPAQCXX_OPENMP#PROFILEOPT27 = -omp -DTAU_OPENMP#ENDIF#
-#IBMXLC_OPENMP#PROFILEOPT27 = -qsmp=omp -DTAU_OPENMP #ENDIF#
-#OPEN64_OPENMP#PROFILEOPT27 = -mp -DTAU_OPENMP #ENDIF#
-#GUIDE#PROFILEOPT27 = -DTAU_OPENMP #ENDIF#
-#PGIOPENMP#PROFILEOPT27 = -mp -D_OPENMP -DTAU_OPENMP -U_RWSTD_MULTI_THREAD -U_REENTRANT #ENDIF#
-#INTELOPENMP#PROFILEOPT27 = -openmp -DTAU_OPENMP #ENDIF#
-#GNUOPENMP#PROFILEOPT27 = -fopenmp -DTAU_OPENMP #ENDIF#
-#OPARI#PROFILEOPT28 = -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#OPARI_REGION#PROFILEOPT28 = -DTAU_OPARI_REGION -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#OPARI_CONSTRUCT#PROFILEOPT28 = -DTAU_OPARI_CONSTRUCT -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#MULTIPLECOUNTERS#PROFILEOPT29 = -DTAU_MULTIPLE_COUNTERS #ENDIF#
-#SGITIMERS#PROFILEOPT30 = -DSGI_TIMERS #ENDIF#
-#BGLTIMERS#PROFILEOPT30 = -DBGL_TIMERS -I/bgl/BlueLight/ppcfloor/bglsys/include #ENDIF#
-#BGPTIMERS#PROFILEOPT30 = -DBGP_TIMERS -I/bgsys/drivers/ppcfloor/arch/include/common -I/bgsys/drivers/ppcfloor/arch/include -I/bgsys/drivers/ppcfloor/arch/include/spi #ENDIF#
-#CRAYTIMERS#PROFILEOPT30 = -DCRAY_TIMERS #ENDIF#
-#LINUXTIMERS#PROFILEOPT31 = -DTAU_LINUX_TIMERS #ENDIF#
-#ALPHATIMERS#PROFILEOPT31 = -DTAU_ALPHA_TIMERS #ENDIF#
-#CPUTIME#PROFILEOPT32 = -DCPU_TIME #ENDIF#
-#PAPIWALLCLOCK#PROFILEOPT33 = -DTAU_PAPI_WALLCLOCKTIME #ENDIF#
-#PAPIVIRTUAL#PROFILEOPT34 = -DTAU_PAPI_VIRTUAL #ENDIF#
-#SGICOUNTERS#PROFILEOPT35 = -DSGI_HW_COUNTERS #ENDIF#
-#EPILOG#PROFILEOPT36 = -DTAU_EPILOG -I$(EPILOGINCDIR) #ENDIF#
-#SCALASCA#PROFILEOPT36 = -DTAU_SCALASCA -DTAU_EPILOG -I$(EPILOGINCDIR) #ENDIF#
-#VAMPIRTRACEINTS#TAU_VAMPIRTRACEOPTS = -DTAU_64BITTYPES_NEEDED -DHAVE_INTTYPES_H #ENDIF#
-#VAMPIRTRACE#PROFILEOPT36 = -DTAU_VAMPIRTRACE -I$(VAMPIRTRACEDIR)/vtlib -I$(VAMPIRTRACEDIR)/include $(TAU_VAMPIRTRACEOPTS)#ENDIF#
-#PROFILECALLPATH#PROFILEOPT36 = -DTAU_CALLPATH #ENDIF#
-#PROFILEPHASE#PROFILEOPT36 = -DTAU_CALLPATH -DTAU_PROFILEPHASE#ENDIF#
-#PYTHON#PROFILEOPT37 = -I$(PYTHON_INCDIR) #ENDIF#
-#NOCOMM#PROFILEOPT38 = -DTAU_NOCOMM #ENDIF#
-#MUSE#PROFILEOPT39 = -DTAU_MUSE #ENDIF#
-#SETNODE0#PROFILEOPT40 = -DTAU_SETNODE0 #ENDIF#
-#COMPENSATE#PROFILEOPT41 = -DTAU_COMPENSATE #ENDIF#
-#MUSE_EVENT#PROFILEOPT42 = -DTAU_MUSE_EVENT #ENDIF#
-#MUSE_MULTIPLE#PROFILEOPT43 = -DTAU_MUSE_MULTIPLE #ENDIF#
-#DYNINST41##PROFILEOPT44 = -DTAU_DYNINST41BUGFIX #ENDIF#
-# DyninstAPI v4.2.1 fixes the bug, so we don't need OPT44 anymore
-#PROFILEMEMORY#PROFILEOPT45 = -DTAU_PROFILEMEMORY #ENDIF#
-PROFILEOPT46 = -DTAU_MPIGREQUEST #ENDIF##MPIGREQUEST#
-#MPIOREQUEST#PROFILEOPT47 = -DTAU_MPIOREQUEST #ENDIF#
-PROFILEOPT48 = -DTAU_MPIDATAREP #ENDIF##MPIDATAREP#
-PROFILEOPT49 = -DTAU_MPIERRHANDLER #ENDIF##MPIERRHANDLER#
-#CATAMOUNT#PROFILEOPT50 = -DTAU_CATAMOUNT #ENDIF#
-#MPICONSTCHAR#PROFILEOPT51 = -DTAU_MPICONSTCHAR #ENDIF#
-PROFILEOPT52 = -DTAU_MPIATTRFUNCTION #ENDIF##MPIATTR#
-PROFILEOPT53 = -DTAU_MPITYPEEX #ENDIF##MPITYPEEX#
-PROFILEOPT54 = -DTAU_MPIADDERROR #ENDIF##MPIADDERROR#
-#MPINEEDSTATUSCONV#PROFILEOPT55 = -DTAU_MPI_NEEDS_STATUS #ENDIF#
-
-#DEPTHLIMIT#PROFILEOPT56 = -DTAU_DEPTH_LIMIT #ENDIF#
-#TAU_CHARM#PROFILEOPT57 = -DTAU_CHARM -I$(CHARMDIR)/include #ENDIF#
-#PROFILEHEADROOM#PROFILEOPT58 = -DTAU_PROFILEHEADROOM #ENDIF#
-#JAVACPUTIME#PROFILEOPT59 = -DJAVA_CPU_TIME #ENDIF#
-PROFILEOPT60 = -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE #ENDIF##TAU_LARGEFILE#
-PROFILEOPT60 = -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -D__xlc__ #ENDIF##BGP#
-# Omit the -D_LARGETFILE64_SOURCE till we can check the IBM crash
-#SHMEM#PROFILEOPT61 = -DTAU_SHMEM #ENDIF#
-#KTAU#PROFILEOPT62 = -DTAUKTAU -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -I$(KTAU_INCUSERDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#KTAU_MERGE#PROFILEOPT63 = -DTAUKTAU_MERGE -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#FREEBSD#PROFILEOPT64 = -DTAU_FREEBSD #ENDIF#
-#PROFILEPARAM#PROFILEOPT65 = -DTAU_PROFILEPARAM #ENDIF#
-#IBMMPI#PROFILEOPT66 = -DTAU_IBM_MPI #ENDIF#
-#WEAKMPIINIT#PROFILEOPT67 = -DTAU_WEAK_MPI_INIT #ENDIF#
-#LAMPI#PROFILEOPT68 = -DTAU_LAMPI #ENDIF#
-#MPICH_IGNORE_CXX_SEEK#PROFILEOPT68 = -DMPICH_IGNORE_CXX_SEEK #ENDIF#
-PROFILEOPT68 = -DMPICH_IGNORE_CXX_SEEK #ENDIF##BGP#
-#MPICH2_MPI_INPLACE#PROFILEOPT73 = -DTAU_MPICH2_MPI_IN_PLACE #ENDIF#
-
-
-############# RENCI Scalable Trace Lib Options #############
-STFF_DIR=
-SDDF_DIR=
-#RENCI_STFF#PROFILEOPT69 = -DRENCI_STFF -I$(STFF_DIR)/include #ENDIF#
-#RENCI_STFF#TAU_LINKER_OPT11 = -L$(STFF_DIR)/lib -lstff -L$(SDDF_DIR)/lib -lPablo $(TAU_MPI_LIB) #ENDIF#
-#RENCI_STFF#RENCI_STFF_O = RenciSTFF.o #ENDIF#
-
-############# KTAU (again) #############
-#KTAU_SHCTR#PROFILEOPT70 = -DTAUKTAU_SHCTR -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#KTAU#TAU_LINKER_OPT12 = -L$(KTAU_LIB) -lktau #ENDIF#
-
-#MIPS32LINUX#PROFILEOPT71 = -D_ABIN32=2 -D_MIPS_SIM=_ABIN32 #ENDIF#
-
-#BGL#PROFILEOPT72 = -DTAU_BGL -I/bgl/BlueLight/ppcfloor/bglsys/include #ENDIF#
-PROFILEOPT72 = -DTAU_BGP -I/bgsys/drivers/ppcfloor/arch/include/common -I/bgsys/drivers/ppcfloor/arch/include -I/bgsys/drivers/ppcfloor/arch/include/spi #ENDIF##BGP#
-
-#For F90 support for all platforms
-FWRAPPER = TauFMpi.o
-MPI2EXTENSIONS = TauMpiExtensions.o #ENDIF##MPI2#
-MPI2EXTENSIONS = #ENDIF##BGP#
-#CRAYX1CC#MPI2EXTENSIONS = #ENDIF#
-
-#SGICOUNTERS#LEXTRA = -lperfex #ENDIF#
-#ALPHATIMERS#LEXTRA = -lrt #ENDIF#
-#SOL2#PCL_EXTRA_LIBS = -lcpc #ENDIF#
-#PCL#LEXTRA = -L$(PCLDIR)/lib -lpcl $(PCL_EXTRA_LIBS) #ENDIF#
-#PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#IA64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi #ENDIF#
-#Due to some problems with older versions of libpfm, we are using the static lib
-#IA64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#PAPIPFM##LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpfm -lpapi -lpfm #ENDIF#
-#X86_64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR)/ -L$(PAPIDIR)/lib64/ -lpapi -lperfctr #ENDIF#
-#SOL2PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -lcpc #ENDIF#
-#IBMPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/usr/lpp/pmtoolkit/lib -L/usr/pmapi/lib -lpmapi#ENDIF#
-#PPC64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#BGLPAPI_RTS#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.rts.a -L/bgl/BlueLight/ppcfloor/bglsys/lib -lbgl_perfctr.rts -lrts.rts -ldevices.rts #ENDIF#
-#BGLPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/bgl/BlueLight/ppcfloor/bglsys/lib -lbgl_perfctr.rts -lrts.rts -ldevices.rts #ENDIF#
-#BGPPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/bgsys/drivers/ppcfloor/runtime/SPI -lSPI.cna #ENDIF#
-#IBM64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi64.a -L/usr/lpp/pmtoolkit/lib -L/usr/pmapi/lib -lpmapi #ENDIF#
-#IBM64PAPILINUX#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#SGI64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi64 #ENDIF#
-#ALPHAPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a /usr/lib/dcpi/dadd.a -lclu -lrt #ENDIF#
-
-TAU_PAPI_EXTRA_FLAGS = $(LEXTRA)
-#IA64PAPI#TAU_PAPI_EXTRA_FLAGS = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi #ENDIF#
-
-
-# By default make TAU_PAPI_RPATH null. Support it on a compiler by compiler basis.
-#PAPI###TAU_PAPI_RPATH = -rpath $(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#PAPI##TAU_PAPI_RPATH = #ENDIF#
-#PPC64PAPI#TAU_PAPI_RPATH = #ENDIF#
-#BGLPAPI#TAU_PAPI_RPATH = #ENDIF#
-#BGPPAPI#TAU_PAPI_RPATH = #ENDIF#
-#USE_INTELCXX#TAU_PAPI_RPATH = #ENDIF#
-#CRAYX1CC#TAU_PAPI_RPATH = #ENDIF#
-#PGI#TAU_PAPI_RPATH = -R$(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#GNU#TAU_PAPI_RPATH = -Wl,-rpath $(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#USE_PATHCC#TAU_PAPI_RPATH = #ENDIF#
-
-# if the user has specified -cc=gcc -c++=g++ -fortran=intel, we shouldn't use -rpath
-# because they are likely going to link with ifort
-#INTEL32_FORTRAN#TAU_PAPI_RPATH = #ENDIF#
-#SOL2PAPI#TAU_PAPI_RPATH = #ENDIF#
-#IBMPAPI#TAU_PAPI_RPATH = #ENDIF#
-#IBM64PAPI#TAU_PAPI_RPATH = #ENDIF#
-#PAPI#TAU_LINKER_OPT1 = $(TAU_PAPI_RPATH) #ENDIF#
-
-#PTHREAD_AVAILABLE#LEXTRA1 = -lpthread #ENDIF#
-#TULIPTHREADS#LEXTRA1 = -L$(TULIPDIR)/Tuliplib -ltulip #ENDIF#
-#SMARTS##include $(TAU_INC_DIR)/makefiles/GNUmakefile-$(HOSTTYPE) #ENDIF#
-#SMARTS#LEXTRA1 = $(LSMARTS) #ENDIF#
-
-TAU_GCCLIB = -lgcc_s
-TAU_GCCLIB = #ENDIF##BGP#
-#INTEL32_ON_64#TAU_GCCLIB = -lgcc #ENDIF#
-#FREEBSD#TAU_GCCLIB = -lgcc #ENDIF#
-#BGL#TAU_GCCLIB = -lgcc #ENDIF#
-#GNU#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#OPEN64ORC_FORTRAN#TAU_FORTRANLIBS = -lfortran -lffio #ENDIF#
-#PATHSCALE_FORTRAN#TAU_FORTRANLIBS = -lpathfstart -lpathfortran #ENDIF#
-#SC_PATHSCALE#TAU_FORTRANLIBS = -lpathfstart -lpathfortran #ENDIF#
-#NAGWARE_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/quickfit.o -L$(EXTRADIR)/lib -lf96 #ENDIF#
-#G95_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR) -lf95 #ENDIF#
-#GNU_FORTRAN#TAU_FORTRANLIBS = -lg2c #ENDIF#
-#GNU_GFORTRAN#TAU_FORTRANLIBS = -L$(TAUGFORTRANLIBDIR) -lgfortran -lgfortranbegin #ENDIF#
-#SC_GFORTRAN#TAU_FORTRANLIBS = -lgfortran -lgfortranbegin #ENDIF#
-#SGI_FORTRAN#TAU_FORTRANLIBS = -lfortran -lftn #ENDIF#
-TAU_IBM_FORTRANLIBS = -bh:4 -bpT:0x10000000 -bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM_FORTRANLIBS = -Wl,-bh:4 -Wl,-bpT:0x10000000 -Wl,-bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-#KAI#TAU_IBM_FORTRANLIBS = --backend -bh:4 --backend -bpT:0x10000000 --backend -bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-TAU_FORTRANLIBS = $(TAU_IBM_FORTRANLIBS) #ENDIF##IBM_FORTRAN#
-
-TAU_IBM64_FORTRANLIBS = -bh:4 -bpT:0x10000000 -bpD:0x20000000 -b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM64_FORTRANLIBS = -Wl,-bh:4 -Wl,-bpT:0x10000000 -Wl,-bpD:0x20000000 -Wl,-b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#KAI#TAU_IBM64_FORTRANLIBS = --backend -bh:4 --backend -bpT:0x10000000 --backend -bpD:0x20000000 --backend -b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#IBM64_FORTRAN#TAU_FORTRANLIBS = $(TAU_IBM64_FORTRANLIBS) #ENDIF#
-#IBM64_FORTRAN#TAU_FORLIBDIR=lib64 #ENDIF#
-TAU_FORLIBDIR=lib #ENDIF##IBM_FORTRAN#
-#BGL#TAU_FORLIBDIR=blrts_dev_lib #ENDIF#
-TAU_FORLIBDIR=bglib #ENDIF##BGP#
-#PPC64#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -lxlf90 -lxlfmath -lxl #ENDIF#
-#BGL#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -L$(EXTRADIR)/blrts_lib -lxlf90 -lxlfmath -lxl #ENDIF#
-
-TAU_BGL_OMP_SERIAL= -lxlomp_ser #ENDIF##BGP#
-#OPENMP#TAU_BGL_OMP_SERIAL= #ENDIF#
-TAU_OMP_SERIAL=$(TAU_BGL_OMP_SERIAL) #ENDIF##BGP#
-TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -lxlf90 -lxlfmath $(TAU_OMP_SERIAL) #ENDIF##BGP#
-
-#IBMXLFAPPLE#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib -lxlf90 -lxlfmath -lxl #ENDIF#
-
-#CRAY_FORTRAN#TAU_FORTRANLIBS = #ENDIF#
-#CRAY_X1_FORTRAN#TAU_FORTRANLIBS = #ENDIF#
-#PGI_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/f90main.o -lpgf90 -lpgf90rtl -lpgf90_rpm1 -lpgf902 -lpgftnrtl -lrt #ENDIF#
-#HP_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib/pa2.0 -lF90 -lcl #ENDIF#
-#INTEL_FORTRAN#TAU_FORTRANLIBS = -lcprts -lPEPCF90 #ENDIF#
-#INTEL32_FORTRAN#TAU_FORTRANLIBS = -lcprts -lCEPCF90 -lF90 #ENDIF#
-#INTELIFORT#TAU_FORTRANLIBS = -lcprts #ENDIF#
-#INTEL81FIX#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -lcxa -lunwind -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#INTEL10FIX#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#INTELCXXLIBICC#TAU_FORTRANLIBS = -lcprts -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#PGI1.7#LEXTRA = -lstd -lstrm#ENDIF#
-#PGI1.7#TAUHELPER = $(TAUROOT)/src/Profile/TauPGIHelper.cpp #ENDIF#
-# LINKER OPTIONS
-TAU_LINKER_OPT2 = $(LEXTRA)
-
-
-#ACC#TAUHELPER = -AA #ENDIF#
-#FUJITSU_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj9i6 -lfj9f6 -lfj9e6 #ENDIF#
-#FUJITSU_SOLARIS#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj90l -lfj90f #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS = -lfui -lfsumai -lfprodai -lfminlai -lfmaxlai -lfminvai -lfmaxvai -lfsu -lsunmath #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS_SUN_OPTERON = -lfsu -lsunmath #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS_SUNCC = -lfsu #ENDIF#
-#SUN386I#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUN_OPTERON) #ENDIF#
-#SUNX86_64#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUN_OPTERON) #ENDIF#
-#SUNCC#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUNCC) #ENDIF#
-#SOL2#EXTRALIBS = -lsocket -lnsl #ENDIF#
-#SUN386I#EXTRALIBS = -lsocket -lnsl -lrt #ENDIF#
-#SUNX86_64#EXTRALIBS = -lsocket -lnsl -lrt #ENDIF#
-#COMPAQ_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/cmplrs/fort90/for_main.o -L$(EXTRADIR)/lib -L$(EXTRADIR)/lib/cmplrs/fort90 -L$(EXTRADIR)/lib/cmplrs/fort90 -lUfor -lfor -lFutil -lm -lmld -lexc -lc #ENDIF#
-#ABSOFT_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib -lfio -lf90math -lU77 -lf77math -lfio #ENDIF#
-#LAHEY_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj9i6 -lfj9f6 -lfj9e6 -lfccx86_6a #ENDIF#
-#LAHEY64_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib64/fj90rt0.o -L$(EXTRADIR)/lib64 -lfj90f -lfj90i -lelf #ENDIF#
-#HITACHI_FORTRAN#TAU_FORTRANLIBS = -lf90 -lhf90math #ENDIF#
-#NEC_FORTRAN#TAU_FORTRANLIBS = -f90lib #ENDIF#
-#COMPAQ_GUIDEF90#TAU_FORTRANLIBS = $(EXTRADIR)/lib/cmplrs/fort90/for_main.o -lfor #ENDIF#
-
-
-#HITACHI#TAU_HITACHI_EXTRA = -L/usr/local/lib -llrz32 #ENDIF#
-
-## To use the standard F90 linker instead of TAU_LINKER + TAU_FORTRANLIBS, add
-#GNU#TAU_CXXLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#GNU#TAU_GNUCXXLIBS = -L$(TAUGCCLIBDIR) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#OPEN64ORC#TAU_CXXLIBS = -lstdc++ #ENDIF#
-#PATHSCALE_FORTRAN#TAU_CXXLIBS = -lstdc++ #ENDIF#
-#LAHEY_FORTRAN#TAU_CXXLIBS = $(TAU_GNUCXXLIBS) /usr/lib/libc.a #ENDIF#
-#NAGWARE_FORTRAN#TAU_CXXLIBS = $(TAU_GNUCXXLIBS) /usr/lib/libc.a #ENDIF#
-#PGI#TAU_CXXLIBS = -lstd -lC #ENDIF#
-#CRAYCNL#TAU_CXXLIBS = -L$(EXTRADIR)/lib -lstd -lC -lpgc #ENDIF#
-#CRAYX1CC#TAU_CXXLIBS = -L/opt/ctl/CC/CC/lib -lC #ENDIF#
-
-TAU_SGI_INIT = /usr/lib32/c++init.o
-#ENABLE64BIT#TAU_SGI_INIT = /usr/lib64/c++init.o #ENDIF#
-#ENABLEN32BIT#TAU_SGI_INIT = /usr/lib32/c++init.o #ENDIF#
-#ENABLE32BIT#TAU_SGI_INIT = /usr/lib/c++init.o #ENDIF#
-
-#SGICC#TAU_CXXLIBS = $(TAU_SGI_INIT) -lC #ENDIF#
-#APPLECXX#TAU_CXXLIBS = -lstd -lC #ENDIF#
-#SOL2#TAU_CXXLIBS = -lCstd -lCrun #ENDIF#
-#SOL2CC#TAU_CXXLIBS_SUN_OPTERON = -lCstd -lCrun -lm #ENDIF#
-#SUNCC#TAU_CXXLIBS_SUNCC = -lCstd -lCrun #ENDIF#
-#SUN386I#TAU_CXXLIBS = $(TAU_CXXLIBS_SUN_OPTERON) #ENDIF#
-#SUNCC#TAU_CXXLIBS = $(TAU_CXXLIBS_SUNCC) #ENDIF#
-#SUNX86_64#TAU_CXXLIBS = $(TAU_CXXLIBS_SUN_OPTERON) #ENDIF#
-#FUJITSU_SOLARIS#TAU_CXXLIBS = -lstd -lstdm #ENDIF#
-#PPC64#TAU_XLCLIBS = -L$(EXTRADIRCXX)/$(TAU_FORLIBDIR) -libmc++ -lstdc++ #ENDIF#
-#IBMXLCAPPLE#TAU_FORLIBDIR =lib #ENDIF#
-#IBMXLCAPPLE#TAU_XLCLIBS = -L$(EXTRADIRCXX)/$(TAU_FORLIBDIR) -libmc++ -lstdc++ #ENDIF#
-#BGL#TAU_XLCLIBS = -L$(EXTRADIRCXX)/blrts_dev_lib -L$(EXTRADIRCXX)/blrts_lib -libmc++ -L/bgl/BlueLight/ppcfloor/blrts-gnu/powerpc-bgl-blrts-gnu/lib -lstdc++ #ENDIF#
-TAU_XLCLIBS = -L$(EXTRADIRCXX)/bglib -libmc++ -lstdc++ #ENDIF##BGP#
-#SP1#TAU_XLCLIBS = -lC #ENDIF#
-TAU_CXXLIBS = $(TAU_XLCLIBS) #ENDIF##USE_IBMXLC#
-#USE_DECCXX#TAU_CXXLIBS = -lcxxstd -lcxx #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS_INTEL = -lcprts -lPEPCF90 #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#INTELIFORT#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#INTEL81FIX#TAU_CXXLIBS_INTEL = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -lcxa -lunwind#ENDIF#
-#INTEL10FIX#TAU_CXXLIBS_INTEL = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#INTELCXXLIBICC#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS = $(TAU_CXXLIBS_INTEL) #ENDIF#
-#APPLECXX#TAU_CXXLIBS = -lstdc++ -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lgcc_s.1 -lSystemStubs #ENDIF#
-
-# EXTERNAL PACKAGES: VAMPIRTRACE
-#VAMPIRTRACE#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEMPI#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.mpi -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEOMPI#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.ompi -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEOMP#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.omp -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-
-# EXTERNAL PACKAGES: EPILOG
-#SCALASCA#TAU_ELG_SERIAL_SUFFIX =.ser #ENDIF#
-#EPILOG#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg$(TAU_ELG_SERIAL_SUFFIX) $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGMPI#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.mpi $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGOMPI#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.ompi $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGOMP#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.omp $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-
-# When using shared, we don't want -lelg.mpi or -lvt.mpi showing up
-#FORCESHARED#TAU_LINKER_OPT3=#ENDIF#
-
-TAU_LINKER_OPT4 = $(LEXTRA1)
-#HITACHI_OPENMP#TAU_LINKER_OPT4 = -lcompas -lpthreads -lc_r #ENDIF#
-#OPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#SOL2CC_OPENMP#TAU_LINKER_OPT5 = -xopenmp #ENDIF#
-#SUNCC_OPENMP#TAU_LINKER_OPT5 = -xopenmp=parallel #ENDIF#
-#GNU#TAU_LINKER_OPT5 = #ENDIF#
-#COMPAQCXX_OPENMP#TAU_LINKER_OPT5 = -omp #ENDIF#
-#IBMXLC_OPENMP#TAU_LINKER_OPT5 = -qsmp=omp #ENDIF#
-#OPEN64_OPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#GUIDE#TAU_LINKER_OPT5 = #ENDIF#
-#PGIOPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#INTELOPENMP#TAU_LINKER_OPT5 = -openmp #ENDIF#
-
-# MALLINFO needs -lmalloc on sgi, sun
-#SGIMP#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-#SOL2#TAU_LINKER_OPT6 = #ENDIF#
-#SUN386I#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-#SUNX86_64#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-
-# We need -lCio with SGI CC 7.4+
-#SGICC#TAU_LINKER_OPT7 = -lCio #ENDIF#
-
-# charm
-#TAU_CHARM#TAU_LINKER_OPT8 = -lconv-core #ENDIF#
-
-# extra libs
-#SUN386I#TAU_LINKER_OPT9 = $(EXTRALIBS) #ENDIF#
-#SUNX86_64#TAU_LINKER_OPT9 = $(EXTRALIBS) #ENDIF#
-#SOL2#TAU_LINKER_OPT9 = $(ExTRALIBS) #ENDIF#
-
-#BGL#TAU_LINKER_OPT10 = -L/bgl/BlueLight/ppcfloor/bglsys/lib -lrts.rts #ENDIF#
-
-TAU_IBM_PYTHON_SHFLAG = -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp -Wl,-einitpytau#ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM_PYTHON_SHFLAG = -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp -Wl,-einitpytau#ENDIF#
-#KAI#TAU_IBM_PYTHON_SHFLAG = --backend -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp --backend -Wl,-einitpytau#ENDIF#
-#ACC#TAU_HPUX_PYTHON_SHFLAG = -lstd_v2 -lCsup_v2 -lm -lcl -lc #ENDIF#
-
-TAU_IBM_LD_FLAGS = -binitfini:poe_remote_main #ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM_LD_FLAGS = -Wl,-binitfini:poe_remote_main #ENDIF#
-#KAI#TAU_IBM_LD_FLAGS = --backend -binitfini:poe_remote_main #ENDIF#
-
-
-#PYTHON#TAU_IBM_SHFLAGS = $(TAU_IBM_PYTHON_SHFLAG) #ENDIF#
-#PYTHON#TAU_HPUX_SHFLAGS = $(TAU_HPUX_PYTHON_SHFLAG) #ENDIF#
-#SP1#TAU_EXTRA_LIBRARY_FLAGS = $(TAU_IBM_SHFLAGS) #ENDIF#
-#SOL2#TAU_EXTRA_LIBRARY_FLAGS = #ENDIF#
-#SGIMP#TAU_EXTRA_LIBRARY_FLAGS = -lmalloc #ENDIF#
-#HP#TAU_EXTRA_LIBRARY_FLAGS = $(TAU_HPUX_SHFLAGS) #ENDIF#
-
-TAU_MPI_WRAPPER_LIB= -L$(TAU_LIB_DIR) -lTauMpi$(TAU_CONFIG) #ENDIF##MPI#
-#EPILOGMPI#TAU_MPI_WRAPPER_LIB= #ENDIF#
-#EPILOGOMPI#TAU_MPI_WRAPPER_LIB= #ENDIF#
-
-##############################################
-# Build TAU_LINKER_SHOPTS
-#GNU#TAU_IBM_LINKER_SHOPTS=-Wl,-brtl -Wl,-bexpall #ENDIF#
-TAU_IBM_LINKER_SHOPTS= -brtl -bexpall #ENDIF##USE_IBMXLC#
-#KAI#TAU_IBM_LINKER_SHOPTS= --backend -brtl #ENDIF#
-#SP1#TAU_LINKER_SHOPTS= $(TAU_IBM_LINKER_SHOPTS) #ENDIF#
-
-##############################################
-# MPI _r suffix check (as in libmpi_r)
-#MPI_R_SUFFIX#TAU_MPI_R_SUFFIX=_r #ENDIF#
-
-##############################################
-# Flags to build a shared object: TAU_SHFLAGS
-#GNU#AR_SHFLAGS = -shared #ENDIF#
-#PGI#AR_SHFLAGS = -shared #ENDIF#
-#SGICC#AR_SHFLAGS = -shared #ENDIF#
-#APPLECXX#AR_SHFLAGS = -dynamiclib -flat_namespace -undefined suppress #ENDIF#
-#SOL2#AR_SHFLAGS = -G #ENDIF#
-#SUN386I#AR_SHFLAGS = -G #ENDIF#
-#SUNX86_64#AR_SHFLAGS = -G #ENDIF#
-AR_SHFLAGS = -G #ENDIF##USE_IBMXLC#
-#USE_DECCXX#AR_SHFLAGS = -shared #ENDIF#
-#USE_INTELCXX#AR_SHFLAGS = -shared #ENDIF#
-#ACC#AR_SHFLAGS = -b #ENDIF#
-TAU_SHFLAGS = $(AR_SHFLAGS) -o
-
-############# RANLIB Options #############
-TAU_RANLIB = echo "Built"
-#APPLECXX#TAU_RANLIB = ranlib #ENDIF#
-#IBMXLCAPPLE#TAU_RANLIB = ranlib #ENDIF#
-
-##############################################
-TAU_AR = ar #ENDIF#
-#SP1#TAU_AR = ar -X32 #ENDIF#
-#IBM64#TAU_AR = ar -X64 #ENDIF#
-#PPC64#TAU_AR = ar #ENDIF#
-#IBM64LINUX#TAU_AR = ar #ENDIF#
-
-
-##############################################
-# PDT OPTIONS
-# You can specify -pdtcompdir=intel -pdtarchdir=x86_64
-# If nothing is specified, PDTARCHDIR uses TAU_ARCH
-PDTARCHDIRORIG=$(TAU_ARCH)
-PDTARCHITECTURE=x86_64
-PDTARCHDIRFINAL=$(PDTARCHDIRORIG)
-#PDTARCHITECTURE#PDTARCHDIRFINAL=$(PDTARCHITECTURE)#ENDIF#
-PDTARCHDIR=$(PDTARCHDIRFINAL)
-#PDTARCH#PDTARCHDIR=$(PDTARCHDIRFINAL)/$(PDTCOMPDIR)#ENDIF#
-
-
-##############################################
-
-PROFILEOPTS = $(PROFILEOPT1) $(PROFILEOPT2) $(PROFILEOPT3) $(PROFILEOPT4) \
- $(PROFILEOPT5) $(PROFILEOPT6) $(PROFILEOPT7) $(PROFILEOPT8) \
- $(PROFILEOPT9) $(PROFILEOPT10) $(PROFILEOPT11) $(PROFILEOPT12) \
- $(PROFILEOPT13) $(PROFILEOPT14) $(PROFILEOPT15) $(PROFILEOPT16) \
- $(PROFILEOPT17) $(PROFILEOPT18) $(PROFILEOPT19) $(PROFILEOPT20) \
- $(PROFILEOPT21) $(PROFILEOPT22) $(PROFILEOPT23) $(PROFILEOPT24) \
- $(PROFILEOPT25) $(PROFILEOPT26) $(PROFILEOPT27) $(PROFILEOPT28) \
- $(PROFILEOPT29) $(PROFILEOPT30) $(PROFILEOPT31) $(PROFILEOPT32) \
- $(PROFILEOPT33) $(PROFILEOPT34) $(PROFILEOPT35) $(PROFILEOPT36) \
- $(PROFILEOPT37) $(PROFILEOPT38) $(PROFILEOPT39) $(PROFILEOPT40) \
- $(PROFILEOPT41) $(PROFILEOPT42) $(PROFILEOPT43) $(PROFILEOPT44) \
- $(PROFILEOPT45) $(PROFILEOPT46) $(PROFILEOPT47) $(PROFILEOPT48) \
- $(PROFILEOPT49) $(PROFILEOPT50) $(PROFILEOPT51) $(PROFILEOPT52) \
- $(PROFILEOPT53) $(PROFILEOPT54) $(PROFILEOPT55) $(PROFILEOPT56) \
- $(PROFILEOPT57) $(PROFILEOPT58) $(PROFILEOPT59) $(PROFILEOPT60) \
- $(PROFILEOPT61) $(PROFILEOPT62) $(PROFILEOPT63) $(PROFILEOPT64) \
- $(PROFILEOPT65) $(PROFILEOPT66) $(PROFILEOPT67) $(PROFILEOPT68) \
- $(PROFILEOPT69) $(PROFILEOPT70) $(PROFILEOPT71) $(PROFILEOPT72) \
- $(PROFILEOPT73) $(PROFILEOPT74) $(PROFILEOPT75) $(PROFILEOPT76) \
- $(TRACEOPT)
-
-##############################################
-
-TAU_LINKER_OPTS = $(TAU_LINKER_OPT1) $(TAU_LINKER_OPT2) $(TAU_LINKER_OPT3) \
- $(TAU_LINKER_OPT4) $(TAU_LINKER_OPT5) $(TAU_LINKER_OPT6) \
- $(TAU_LINKER_OPT7) $(TAU_LINKER_OPT8) $(TAU_LINKER_OPT9) \
- $(TAU_LINKER_OPT10) $(TAU_LINKER_OPT11) $(TAU_LINKER_OPT12)
-
-##############################################
-
-############# TAU Fortran ####################
-TAU_LINKER=$(TAU_CXX)
-#INTEL_FORTRAN##TAU_LINKER=$(TAU_F90) #ENDIF#
-#INTEL32_FORTRAN##TAU_LINKER=$(TAU_F90) #ENDIF#
-# Intel efc compiler acts as a linker - NO. Let C++ be the linker.
-
-##############################################
-############# TAU Options ####################
-TAUDEFS = $(PROFILEOPTS)
-
-TAUINC = -I$(TAU_INC_DIR)
-
-TAULIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -ltau$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-
-TAUMPILIBS = $(TAU_MPI_LIB)
-
-TAUMPIFLIBS = $(TAU_MPI_FLIB)
-
-### ACL S/W requirement
-TAU_DEFS = $(TAUDEFS)
-
-TAU_INCLUDE = -I$(TAU_INC_DIR)
-#PERFLIB#TAU_INCLUDE = -I$(PERFINCDIR) #ENDIF#
-#PERFLIB#TAU_DEFS = #ENDIF#
-#PERFLIB#TAU_COMPILER_EXTRA_OPTIONS=-optTau=-p #ENDIF#
-
-TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/Memory
-#IBMXLCAPPLE#TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/MemoryWrapper #ENDIF#
-#APPLECXX#TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/MemoryWrapper #ENDIF#
-
-TAU_LIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -ltau$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-#PERFLIB#TAU_LIBS = #ENDIF#
-
-TAU_SHLIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAUsh$(TAU_CONFIG) $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS) $(TAU_MPI_LIB)
-#PERFLIB#TAU_SHLIBS = #ENDIF#
-TAU_EXLIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAU $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS) $(TAU_MPI_LIB)
-
-TAU_SHLIBS_NOSHOPTS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAUsh$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-
-TAU_DISABLE = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTauDisable
-
-TAU_MPI_INCLUDE = $(TAU_MPI_INC)
-
-TAU_MPI_LIBS = $(TAU_MPI_LIB)
-
-TAU_MPI_FLIBS = $(TAU_MPI_FLIB)
-
-## TAU TRACE INPUT LIBRARY (can build a trace converter using TAU TIL)
-TAU_TRACE_INPUT_LIB = -L$(TAU_LIB_DIR) -lTAU_traceinput$(TAU_CONFIG)
-
-## Don't include -lpthread or -lsmarts. Let app. do that.
-#############################################
-## IBM SPECIFIC CHANGES TO TAU_MPI_LIBS
-#SP1#TAU_MPI_LDFLAGS = $(TAU_IBM_LD_FLAGS) #ENDIF#
-TAU_LDFLAGS = $(TAU_MPI_LDFLAGS) #ENDIF##MPI#
-#SP1#TAU_IBM_MPI_LIBS = $(TAU_MPI_LIB) -L$(TAU_MPILIB_DIR)/ip -lvtd$(TAU_MPI_R_SUFFIX) #ENDIF#
-#SP1#TAU_IBM_FMPI_LIBS = $(TAU_MPI_FLIB) -L$(TAU_MPILIB_DIR)/ip -lvtd$(TAU_MPI_R_SUFFIX) #ENDIF#
-#SP1#TAU_MPI_LIBS_FLAGS= $(TAU_IBM_MPI_LIBS) #ENDIF#
-#SP1#TAU_MPI_FLIBS_FLAGS = $(TAU_IBM_MPI_FLIBS) #ENDIF#
-TAU_MPI_LIBS_FLAGS = $(TAU_MPI_LIB) #ENDIF##MPI#
-TAU_MPI_FLIBS_FLAGS = $(TAU_MPI_FLIB) #ENDIF##MPI#
-TAU_MPI_LIBS = $(TAU_MPI_LIBS_FLAGS) #ENDIF##MPI#
-TAU_MPI_FLIBS = $(TAU_MPI_FLIBS_FLAGS) #ENDIF##MPI#
-
-#SP1#TAUMPILIBS = $(TAU_MPI_LIBS) #ENDIF#
-#SP1#TAUMPIFLIBS = $(TAU_MPI_FLIBS) #ENDIF#
-#############################################
-#SHMEM#TAU_SHMEM_OBJS = TauShmemCray.o #ENDIF#
-#SP1#TAU_SHMEM_OBJS = TauShmemTurbo.o #ENDIF#
-#GPSHMEM#TAU_SHMEM_OBJS = TauShmemGpshmem.o #ENDIF#
-
-TAU_SHMEM_INCLUDE = $(TAU_SHMEM_INC)
-
-TAU_SHMEM_LIBS = -L$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/ -lTauShmem$(TAU_CONFIG) $(TAU_SHMEM_LIB)
-#############################################
-# TAU COMPILER SHELL SCRIPT OPTIONS
-TAUCOMPILEROPTS= -optPdtDir="$(PDTDIR)/${PDTARCHDIR}"\
- -optPdtCOpts="$(TAU_INCLUDE) $(TAU_DEFS) $(TAU_MPI_INCLUDE)"\
- -optPdtCxxOpts="$(TAU_INCLUDE) $(TAU_DEFS) $(TAU_MPI_INCLUDE)"\
- -optTauInstr="$(TAU_BIN_DIR)/tau_instrumentor" \
- -optNoMpi \
- -optOpariDir="$(OPARIDIR)" -optOpariTool="$(TAU_OPARI_TOOL)" \
- -optTauCC="$(TAU_CC)" \
- -optTauIncludes="$(TAU_INCLUDE) $(TAU_MPI_INCLUDE)" \
- -optTauDefs="$(TAU_DEFS)" \
- -optTauCompile="$(TAU_INCLUDE) $(TAU_MPI_INCLUDE) $(TAU_DEFS) "\
- -optLinking="$(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS)"\
- -optSharedLinking="$(TAU_MPI_FLIBS) $(TAU_EXLIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS)"\
- $(TAU_COMPILER_EXTRA_OPTIONS) \
- -optIncludeMemory="$(TAU_INCLUDE_MEMORY)"
-#############################################
-
-TAU_SHAREDLIBS=$(TAUHELPER) -L$(TAU_LIB_DIR) -lTAU $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS)
-SHAREDEXTRAS=
-#FORCESHARED#SHAREDEXTRAS=-optSharedLinkReset="$(TAU_SHAREDLIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS) $(TAU_MPI_NOWRAP_FLIB)" -optShared #ENDIF#
-TAU_COMPILER=$(TAU_BIN_DIR)/tau_compiler.sh $(TAUCOMPILEROPTS) $(SHAREDEXTRAS)
-#############################################
-# These options could be included in the application Makefile as
-#CFLAGS = $(TAUDEFS) $(TAUINC)
-#
-#LIBS = $(TAULIBS)
-#
-# To run the application without Profiling/Tracing use
-#CFLAGS = $(TAUINC)
-# Don't use TAUDEFS but do include TAUINC
-# Also ignore TAULIBS when Profiling/Tracing is not used.
-#############################################
-
+++ /dev/null
-#****************************************************************************
-#* TAU Portable Profiling Package **
-#* http://www.cs.uoregon.edu/research/tau **
-#****************************************************************************
-#* Copyright 1997-2002 **
-#* Department of Computer and Information Science, University of Oregon **
-#* Advanced Computing Laboratory, Los Alamos National Laboratory **
-#****************************************************************************
-#######################################################################
-## pC++/Sage++ Copyright (C) 1993,1995 ##
-## Indiana University University of Oregon University of Rennes ##
-#######################################################################
-
-#######################################################################
-# This is a sample Makefile that contains the Profiling and Tracing
-# options. Makefiles of other applications and libraries (not included
-# in this distribution) should include this Makefile.
-# It defines the following variables that should be added to CFLAGS
-# TAU_INCLUDE - Include path for tau headers
-# TAU_DEFS - Defines that are needed for tracing and profiling only.
-# And for linking add to LIBS
-# TAU_LIBS - TAU Tracing and Profiling library libprof.a
-#
-# When the user needs to turn off tracing and profiling and run the
-# application without any runtime overhead of instrumentation, simply
-# remove TAUDEFS and TAULIBS from CFLAGS and LIBS respectively but keep
-# TAUINC.
-#######################################################################
-
-########### Automatically modified by the configure script ############
-CONFIG_ARCH=xt3
-TAU_ARCH=xt3
-CONFIG_CC=qk-pgcc
-CONFIG_CXX=qk-pgCC
-TAU_CC_FE=$(CONFIG_CC)
-#BGL#TAU_CC_FE=xlc #ENDIF#
-#BGP#TAU_CC_FE=xlc #ENDIF#
-TAU_CC_FE=gcc #ENDIF##CATAMOUNT#
-#SC_GFORTRAN#TAU_CC_FE=gcc #ENDIF#
-#SC_PATHSCALE#TAU_CC_FE=gcc #ENDIF#
-PCXX_OPT=-g
-USER_OPT=
-EXTRADIR=/opt/pgi/6.1.4/linux86-64/6.1/bin/..
-EXTRADIRCXX=
-TAUROOT=/usr/local/packages/TAU-2.17/tau-2.17
-TULIPDIR=
-TAUEXTRASHLIBOPTS=
-TAUGCCLIBOPTS=
-TAUGCCLIBDIR=
-PCLDIR=
-PAPIDIR=
-PAPISUBDIR=
-CHARMDIR=
-PDTDIR=/usr/local/packages/TAU-2.17/tau-2.17/../pdtoolkit-3.12
-PDTCOMPDIR=
-DYNINSTDIR=
-JDKDIR=
-SLOG2DIR=
-OPARIDIR=
-TAU_OPARI_TOOL=
-EPILOGDIR=
-EPILOGBINDIR=
-EPILOGINCDIR=
-EPILOGLIBDIR=
-EPILOGEXTRALINKCMD=
-VAMPIRTRACEDIR=
-KTAU_INCDIR=
-KTAU_INCUSERDIR=
-KTAU_LIB=
-KTAU_KALLSYMS_PATH=
-PYTHON_INCDIR=
-PYTHON_LIBDIR=
-PERFINCDIR=
-PERFLIBDIR=
-PERFLIBRARY=
-TAU_SHMEM_INC=
-TAU_SHMEM_LIB=
-TAU_CONFIG=-mpi-pdt-pgi
-TAU_MPI_INC=-I/opt/xt-mpt/default/mpich2-64/P2/include
-TAU_MPI_LIB=/usr/local/packages/TAU-2.17/tau-2.17/xt3/lib/libTauMpi$(TAU_CONFIG).a -L/opt/xt-mpt/default/mpich2-64/P2/lib -lrt -lmpichcxx -lmpich -lrt
-TAU_MPI_FLIB=-L/opt/xt-mpt/default/mpich2-64/P2/lib -L/usr/local/packages/TAU-2.17/tau-2.17/xt3/lib/libTauMpi$(TAU_CONFIG).a -lrt -lmpichcxx -lmpich -lrt
-TAU_MPILIB_DIR=/opt/xt-mpt/default/mpich2-64/P2/lib
-TAU_MPI_NOWRAP_LIB= -L/opt/xt-mpt/default/mpich2-64/P2/lib -lrt -lmpichcxx -lmpich -lrt
-TAU_MPI_NOWRAP_FLIB=-L/opt/xt-mpt/default/mpich2-64/P2/lib -lrt -lmpichcxx -lmpich -lrt
-FULL_CXX=/opt/xt-pe/1.5.47/bin/snos64/qk-pgCC
-FULL_CC=/opt/xt-pe/1.5.47/bin/snos64/qk-pgcc
-TAU_PREFIX_INSTALL_DIR=/usr/local/packages/TAU-2.17/tau-2.17
-
-TAU_BIN_DIR=$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/bin
-TAU_INC_DIR=$(TAU_PREFIX_INSTALL_DIR)/include
-TAU_LIB_DIR=$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/lib
-
-#######################################################################
-
-#ENABLE64BIT#ABI = -64 #ENDIF#
-#ENABLEN32BIT#ABI = -n32 #ENDIF#
-#ENABLE32BIT#ABI = -32 #ENDIF#
-
-#######################################################################
-#SP1#IBM_XLC_ABI = -q32 #ENDIF#
-#SP1#IBM_GNU_ABI = -maix32 #ENDIF#
-#IBM64#IBM_XLC_ABI = -q64 #ENDIF#
-#IBM64#IBM_GNU_ABI = -maix64 #ENDIF#
-#IBM64LINUX#IBM_XLC_ABI = -q64 #ENDIF#
-#IBM64LINUX#IBM_GNU_ABI = -m64 #ENDIF#
-#SUNX86_64#SUN_GNU_ABI = -m64 #ENDIF#
-#SUNX86_64#SUN_CC_ABI = -xarch=amd64 #ENDIF#
-#MIPS32LINUX#SC_GNU_ABI = -mabi=n32 #ENDIF#
-#MIPS32LINUX#SC_PATH_ABI = -n32 #ENDIF#
-#MIPS64LINUX#SC_GNU_ABI = -mabi=64 #ENDIF#
-#MIPS64LINUX#SC_PATH_ABI = -64 #ENDIF#
-#GNU#SC_ABI = $(SC_GNU_ABI) #ENDIF#
-#USE_PATHCC#SC_ABI = $(SC_PATH_ABI) #ENDIF#
-#MIPS32#ABI = $(SC_ABI) #ENDIF#
-#MIPS64#ABI = $(SC_ABI) #ENDIF#
-
-#USE_IBMXLC#IBM_ABI = $(IBM_XLC_ABI) #ENDIF#
-#GNU#IBM_ABI = $(IBM_GNU_ABI) #ENDIF#
-#SP1# ABI = $(IBM_ABI) #ENDIF#
-#PPC64# ABI = $(IBM_ABI) #ENDIF#
-#SOLARIS64#SUN_GNU_ABI = -mcpu=v9 -m64 #ENDIF#
-#SOLARIS64#SUN_CC_ABI = -xarch=v9 -xcode=pic32 #ENDIF#
-#SOL2CC#SUN_ABI = $(SUN_CC_ABI) #ENDIF#
-#GNU#SUN_ABI = $(SUN_GNU_ABI) #ENDIF#
-#SOL2#ABI = $(SUN_ABI) #ENDIF#
-#SUNX86_64#ABI = $(SUN_ABI) #ENDIF#
-#FORCEIA32#ABI = -m32#ENDIF#
-#######################################################################
-F90_ABI = $(ABI)
-#IBM64_FORTRAN#F90_ABI = -q64 #ENDIF#
-#######################################################################
-
-############# Standard Defines ##############
-TAU_CC = $(CONFIG_CC) $(ABI) $(ISA)
-TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT)
-TAU_RUN_CC = $(FULL_CC) $(ABI) $(ISA)
-TAU_RUN_CXX = $(FULL_CXX) $(ABI) $(ISA)
-TAU_INSTALL = /bin/cp
-TAU_SHELL = /bin/sh
-LSX = .a
-#############################################
-# JAVA DEFAULT ARCH
-#############################################
-JDKARCH = linux
-#COMPAQ_ALPHA#JDKARCH = alpha #ENDIF#
-#SOL2#JDKARCH = solaris #ENDIF#
-#SGIMP#JDKARCH = irix #ENDIF#
-#SP1#JDKARCH = aix #ENDIF#
-#T3E#JDKARCH = cray #ENDIF#
-#############################################
-# JAVA OBJECTS
-#############################################
-#JAVA#TAU_JAVA_O = TauJava.o TauJAPI.o #ENDIF#
-#JAVA#TAUJAPI = Profile.class #ENDIF#
-
-
-#############################################
-# OpenMP OBJECTS
-#############################################
-#OPENMP#OPENMP_O = OpenMPLayer.o #ENDIF#
-
-#############################################
-# Opari OBJECTS
-#############################################
-#OPARI#OPARI_O = TauOpari.o #ENDIF#
-#KOJAKOPARI#OPARI_O = TauKojakOpari.o #ENDIF#
-#EPILOG#OPARI_O = #ENDIF#
-#VAMPIRTRACE#OPARI_O = #ENDIF#
-#GNU#OPARI_O = #ENDIF#
-
-#############################################
-# CallPath OBJECTS
-#############################################
-#PROFILECALLPATH#CALLPATH_O = TauCallPath.o #ENDIF#
-#PROFILEPARAM#PARAM_O = ProfileParam.o #ENDIF#
-
-#############################################
-# Python Binding OBJECTS
-#############################################
-#PYTHON#PYTHON_O = PyGroups.o PyExceptions.o PyDatabase.o PyBindings.o PyTimer.o PyTau.o #ENDIF#
-
-#############################################
-# DYNINST DEFAULT ARCH
-#############################################
-DYNINST_PLATFORM = $(PLATFORM)
-
-
-#PCL##include $(TAU_INC_DIR)/makefiles/PCLMakefile.stub #ENDIF#
-
-############# OpenMP Fortran Option ########
-#OPENMP#TAU_F90_OPT = -mp #ENDIF#
-#SOL2CC_OPENMP#TAU_F90_OPT = -xopenmp #ENDIF#
-#SUNCC_OPENMP#TAU_F90_OPT = -xopenmp=parallel #ENDIF#
-#COMPAQCXX_OPENMP#TAU_F90_OPT = -omp #ENDIF#
-#IBMXLC_OPENMP#TAU_F90_OPT = -qsmp=omp #ENDIF#
-#GUIDE#TAU_F90_OPT = #ENDIF#
-#PGIOPENMP#TAU_F90_OPT = -mp #ENDIF#
-#INTELOPENMP#TAU_F90_OPT = -openmp #ENDIF#
-#HITACHI_OPENMP#TAU_F90_OPT = #ENDIF#
-
-#THREADSAFE_COMPILERS#TAU_R =_r #ENDIF#
-
-############# Fortran Compiler #############
-#GNU_FORTRAN#TAU_F90 = g77 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#GNU_GFORTRAN#TAU_F90 = gfortran $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#G95_FORTRAN#TAU_F90 = g95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SC_GFORTRAN#TAU_F90 = scgfortran $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SGI_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBM_FORTRAN#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#BGP#TAU_F90 = bgxlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#BGL#TAU_F90 = blrts_xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBM64_FORTRAN#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBMXLFAPPLE#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAY_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAY_X1_FORTRAN#TAU_F90 = ftn $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-TAU_F90 = pgf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF##PGI_FORTRAN#
-#CRAYCNL#TAU_F90 = ftn $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-TAU_F90 = qk-pgf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF##PGI_CATAMOUNT#
-#ABSOFT_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#LAHEY_FORTRAN#TAU_F90 = lf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#LAHEY64_FORTRAN#TAU_F90 = lf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#NAGWARE_FORTRAN#TAU_F90 = f95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#FUJITSU_FORTRAN#TAU_F90 = F90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#FUJITSU_SOLARIS#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SUN_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#COMPAQ_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#KAI_FORTRAN#TAU_F90 = guidef90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#HP_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#HITACHI_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTEL_FORTRAN#TAU_F90 = efc $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTEL32_FORTRAN#TAU_F90 = ifc $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTELIFORT#TAU_F90 = ifort $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PATHSCALE_FORTRAN#TAU_F90 = pathf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SC_PATHSCALE#TAU_F90 = scpathf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#OPEN64ORC_FORTRAN#TAU_F90 = orf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#NEC_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-
-
-############# Portable F90 Options #############
-#IBM64_FORTRAN#TAU_F90_FIXED = -qfixed #ENDIF#
-#IBM_FORTRAN#TAU_F90_FIXED = -qfixed #ENDIF#
-#IBM_FORTRAN#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-#IBMXLFAPPLE#TAU_F90_FIXED = -qfixed #ENDIF#
-#IBMXLFAPPLE#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-#IBM64_FORTRAN#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-
-############# Profiling Options #############
-PROFILEOPT1 = -DPROFILING_ON #ENDIF##PROFILE#
-#PCL#PROFILEOPT3 = -DTAU_PCL -I$(PCLDIR)/include #ENDIF#
-#PAPI#PROFILEOPT3 = -DTAU_PAPI -I$(PAPIDIR)/src -I$(PAPIDIR)/include #ENDIF#
-#PCL#PCL_O = PclLayer.o #ENDIF#
-#PAPI#PAPI_O = PapiLayer.o #ENDIF#
-#MULTIPLECOUNTERS#MULT_O = MultipleCounters.o #ENDIF#
-#PROFILECALLS#PROFILEOPT4 = -DPROFILE_CALLS #ENDIF#
-#PROFILESTATS#PROFILEOPT5 = -DPROFILE_STATS #ENDIF#
-#DEBUGPROF#PROFILEOPT6 = -DDEBUG_PROF #ENDIF#
-PROFILEOPT7 = -DTAU_STDCXXLIB #ENDIF##STDCXXLIB#
-#CRAYX1CC#PROFILEOPT7 = #ENDIF#
-#CRAYCC#PROFILEOPT7 = #ENDIF#
-#INTELTFLOP#PROFILEOPT8 = -DPOOMA_TFLOP #ENDIF#
-#NORTTI#PROFILEOPT9 = -DNO_RTTI #ENDIF#
-#RTTI#PROFILEOPT9 = -DRTTI #ENDIF#
-#GNU#PROFILEOPT10 = -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#APPLECXX#PROFILEOPT10 = -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#SOL2CC#PROFILEOPT10 = -DTAU_SOL2CC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SUNCC#PROFILEOPT10 = -DTAU_SOL2CC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_PATHCC#PROFILEOPT10 = -DTAU_DOT_H_LESS_HEADERS -fPIC -DTAU_PATHSCALE #ENDIF#
-#OPEN64ORC#PROFILEOPT10 = -DTAU_DOT_H_LESS_HEADERS -DTAU_OPEN64ORC -fpic #ENDIF#
-#CALLSTACK#PROFILEOPT11 = -DPROFILE_CALLSTACK #ENDIF#
-#PGI1.7#PROFILEOPT12 = -DPGI #ENDIF#
-#CRAYKAI#PROFILEOPT12 = -DCRAYKAI #ENDIF#
-#HP_FORTRAN#PROFILEOPT12 = -DHP_FORTRAN #ENDIF#
-#CRAYCC#PROFILEOPT13 = -h instantiate=used -DCRAYCC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#CRAYX1CC#PROFILEOPT13 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SGICC#TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT) -LANG:std #ENDIF#
-#INTELCXXLIBICC#TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT) -cxxlib-icc #ENDIF#
-#PTHREAD_AVAILABLE#PROFILEOPT15 = -DPTHREADS #ENDIF#
-#COMPAQCXX_PTHREAD#PROFILEOPT15 = -DPTHREADS -pthread #ENDIF#
-#TAU_SPROC#PROFILEOPT15 = -DTAU_SPROC #ENDIF#
-#TAU_PAPI_THREADS#PROFILEOPT15 = -DTAU_PAPI_THREADS #ENDIF#
-#TULIPTHREADS#PROFILEOPT16 = -DTULIPTHREADS #ENDIF#
-#TRACE#TRACEOPT = -DTRACING_ON #ENDIF#
-#TRACE#EVENTS_O = Tracer.o #ENDIF#
-#KTAU#KTAU_O = TauKtau.o KtauProfiler.o KtauSymbols.o #ENDIF#
-#KTAU_MERGE#KTAU_MERGE_O = KtauFuncInfo.o KtauMergeInfo.o ktau_syscall.o #ENDIF#
-#KTAU_SHCTR#KTAU_SHCTR_O = KtauCounters.o #ENDIF#
-#MPITRACE#TRACEOPT = -DTAU_MPITRACE -DTRACING_ON #ENDIF#
-#MPITRACE#EVENTS_O = Tracer.o #ENDIF#
-#MUSE#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#MUSE_EVENT#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#MUSE_MULTIPLE#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#COMPENSATE#COMPENSATE_O = TauCompensate.o #ENDIF#
-#PTHREAD_AVAILABLE#THR_O = PthreadLayer.o #ENDIF#
-#TAU_PAPI_THREADS#THR_O = PapiThreadLayer.o #ENDIF#
-#TAU_SPROC#THR_O = SprocLayer.o #ENDIF#
-#JAVA#THR_O = JavaThreadLayer.o #ENDIF#
-#TULIPTHREADS#THR_O = TulipThreadLayer.o #ENDIF#
-#LINUXTIMERS#PLATFORM_O = TauLinuxTimers.o #ENDIF#
-#TULIPTHREADS#PROFILEOPT17 = -I$(TULIPDIR)/include -I$(TULIPDIR)/Tuliplib #ENDIF#
-#SMARTS#PROFILEOPT17 = -I$(TULIPDIR)/include -I$(TULIPDIR)/lib -I$(TULIPDIR)/machine-specific/$(HOSTTYPE) #ENDIF#
-#SMARTS#PROFILEOPT18 = -DSMARTS #ENDIF#
-#KAI#PROFILEOPT19 = -DKAI -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_DECCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SGICC#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_INTELCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#USE_NECCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF##PGI#
-#ACC#PROFILEOPT19 = -AA +z -DTAU_DOT_H_LESS_HEADERS -DTAU_HPUX #ENDIF#
-#FUJITSU#PROFILEOPT19 = -DFUJITSU -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#KAINOEX#PROFILEOPT20 = --no_exceptions #ENDIF#
-#SGICCNOEX#PROFILEOPT20 = -LANG:exceptions=off #ENDIF#
-#HPGNU#PROFILEOPT21 = -fPIC #ENDIF#
-#HITACHI#PROFILEOPT21 = -DTAU_HITACHI #ENDIF#
-#SP1#PROFILEOPT21 = -D_POSIX_SOURCE -DTAU_AIX #ENDIF#
-#PPC64#TAU_PIC_PROFILEOPT21 = -qpic=large #ENDIF#
-#BGL#TAU_PIC_PROFILEOPT21 = #ENDIF#
-#USE_IBMXLC#PROFILEOPT21 = -DTAU_DOT_H_LESS_HEADERS -DTAU_XLC $(TAU_PIC_PROFILEOPT21) #ENDIF#
-#IBMXLCAPPLE#PROFILEOPT21 = -DTAU_DOT_H_LESS_HEADERS -DTAU_XLC -DTAU_APPLE_XLC #ENDIF#
-#PCLPTHREAD#PROFILEOPT22 = -DPCL_MUTEX_LOCK #ENDIF#
-#JAVA#PROFILEOPT23 = -DJAVA #ENDIF#
-#MONITOR#PROFILEOPT24 = -DMONITORING_ON #ENDIF#
-#JAVA#PROFILEOPT25 = -I$(JDKDIR)/include -I$(JDKDIR)/include/$(JDKARCH) #ENDIF#
-PROFILEOPT26 = -DTAU_MPI #ENDIF##MPI#
-PROFILEOPT26 = -DTAU_MPI -DTAU_MPI_THREADED #ENDIF##MPI_THREADED#
-#OPENMP#PROFILEOPT27 = -mp -DTAU_OPENMP#ENDIF#
-#GNU#PROFILEOPT27 = #ENDIF#
-#SOL2CC_OPENMP#PROFILEOPT27 = -xopenmp -DTAU_OPENMP#ENDIF#
-#SUNCC_OPENMP#PROFILEOPT27 = -xopenmp=parallel -DTAU_OPENMP#ENDIF#
-#SUNCC_OPENMP#PROFILEOPT27 = -xopenmp=parallel -DTAU_OPENMP#ENDIF#
-#HITACHI_OPENMP#PROFILEOPT27 = -DTAU_OPENMP#ENDIF#
-#COMPAQCXX_OPENMP#PROFILEOPT27 = -omp -DTAU_OPENMP#ENDIF#
-#IBMXLC_OPENMP#PROFILEOPT27 = -qsmp=omp -DTAU_OPENMP #ENDIF#
-#OPEN64_OPENMP#PROFILEOPT27 = -mp -DTAU_OPENMP #ENDIF#
-#GUIDE#PROFILEOPT27 = -DTAU_OPENMP #ENDIF#
-#PGIOPENMP#PROFILEOPT27 = -mp -D_OPENMP -DTAU_OPENMP -U_RWSTD_MULTI_THREAD -U_REENTRANT #ENDIF#
-#INTELOPENMP#PROFILEOPT27 = -openmp -DTAU_OPENMP #ENDIF#
-#GNUOPENMP#PROFILEOPT27 = -fopenmp -DTAU_OPENMP #ENDIF#
-#OPARI#PROFILEOPT28 = -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#OPARI_REGION#PROFILEOPT28 = -DTAU_OPARI_REGION -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#OPARI_CONSTRUCT#PROFILEOPT28 = -DTAU_OPARI_CONSTRUCT -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#MULTIPLECOUNTERS#PROFILEOPT29 = -DTAU_MULTIPLE_COUNTERS #ENDIF#
-#SGITIMERS#PROFILEOPT30 = -DSGI_TIMERS #ENDIF#
-#BGLTIMERS#PROFILEOPT30 = -DBGL_TIMERS -I/bgl/BlueLight/ppcfloor/bglsys/include #ENDIF#
-#CRAYTIMERS#PROFILEOPT30 = -DCRAY_TIMERS #ENDIF#
-#LINUXTIMERS#PROFILEOPT31 = -DTAU_LINUX_TIMERS #ENDIF#
-#ALPHATIMERS#PROFILEOPT31 = -DTAU_ALPHA_TIMERS #ENDIF#
-#CPUTIME#PROFILEOPT32 = -DCPU_TIME #ENDIF#
-#PAPIWALLCLOCK#PROFILEOPT33 = -DTAU_PAPI_WALLCLOCKTIME #ENDIF#
-#PAPIVIRTUAL#PROFILEOPT34 = -DTAU_PAPI_VIRTUAL #ENDIF#
-#SGICOUNTERS#PROFILEOPT35 = -DSGI_HW_COUNTERS #ENDIF#
-#EPILOG#PROFILEOPT36 = -DTAU_EPILOG -I$(EPILOGINCDIR) #ENDIF#
-#VAMPIRTRACEINTS#TAU_VAMPIRTRACEOPTS = -DTAU_64BITTYPES_NEEDED -DHAVE_INTTYPES_H #ENDIF#
-#VAMPIRTRACE#PROFILEOPT36 = -DTAU_VAMPIRTRACE -I$(VAMPIRTRACEDIR)/vtlib -I$(VAMPIRTRACEDIR)/include $(TAU_VAMPIRTRACEOPTS)#ENDIF#
-#PROFILECALLPATH#PROFILEOPT36 = -DTAU_CALLPATH #ENDIF#
-#PROFILEPHASE#PROFILEOPT36 = -DTAU_CALLPATH -DTAU_PROFILEPHASE#ENDIF#
-#PYTHON#PROFILEOPT37 = -I$(PYTHON_INCDIR) #ENDIF#
-#NOCOMM#PROFILEOPT38 = -DTAU_NOCOMM #ENDIF#
-#MUSE#PROFILEOPT39 = -DTAU_MUSE #ENDIF#
-#SETNODE0#PROFILEOPT40 = -DTAU_SETNODE0 #ENDIF#
-#COMPENSATE#PROFILEOPT41 = -DTAU_COMPENSATE #ENDIF#
-#MUSE_EVENT#PROFILEOPT42 = -DTAU_MUSE_EVENT #ENDIF#
-#MUSE_MULTIPLE#PROFILEOPT43 = -DTAU_MUSE_MULTIPLE #ENDIF#
-#DYNINST41##PROFILEOPT44 = -DTAU_DYNINST41BUGFIX #ENDIF#
-# DyninstAPI v4.2.1 fixes the bug, so we don't need OPT44 anymore
-#PROFILEMEMORY#PROFILEOPT45 = -DTAU_PROFILEMEMORY #ENDIF#
-PROFILEOPT46 = -DTAU_MPIGREQUEST #ENDIF##MPIGREQUEST#
-#MPIOREQUEST#PROFILEOPT47 = -DTAU_MPIOREQUEST #ENDIF#
-PROFILEOPT48 = -DTAU_MPIDATAREP #ENDIF##MPIDATAREP#
-PROFILEOPT49 = -DTAU_MPIERRHANDLER #ENDIF##MPIERRHANDLER#
-PROFILEOPT50 = -DTAU_CATAMOUNT #ENDIF##CATAMOUNT#
-#MPICONSTCHAR#PROFILEOPT51 = -DTAU_MPICONSTCHAR #ENDIF#
-PROFILEOPT52 = -DTAU_MPIATTRFUNCTION #ENDIF##MPIATTR#
-PROFILEOPT53 = -DTAU_MPITYPEEX #ENDIF##MPITYPEEX#
-PROFILEOPT54 = -DTAU_MPIADDERROR #ENDIF##MPIADDERROR#
-#MPINEEDSTATUSCONV#PROFILEOPT55 = -DTAU_MPI_NEEDS_STATUS #ENDIF#
-
-#DEPTHLIMIT#PROFILEOPT56 = -DTAU_DEPTH_LIMIT #ENDIF#
-#TAU_CHARM#PROFILEOPT57 = -DTAU_CHARM -I$(CHARMDIR)/include #ENDIF#
-#PROFILEHEADROOM#PROFILEOPT58 = -DTAU_PROFILEHEADROOM #ENDIF#
-#JAVACPUTIME#PROFILEOPT59 = -DJAVA_CPU_TIME #ENDIF#
-PROFILEOPT60 = -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE #ENDIF##TAU_LARGEFILE#
-#SHMEM#PROFILEOPT61 = -DTAU_SHMEM #ENDIF#
-#KTAU#PROFILEOPT62 = -DTAUKTAU -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -I$(KTAU_INCUSERDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#KTAU_MERGE#PROFILEOPT63 = -DTAUKTAU_MERGE -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#FREEBSD#PROFILEOPT64 = -DTAU_FREEBSD #ENDIF#
-#PROFILEPARAM#PROFILEOPT65 = -DTAU_PROFILEPARAM #ENDIF#
-#IBMMPI#PROFILEOPT66 = -DTAU_IBM_MPI #ENDIF#
-PROFILEOPT67 = -DTAU_WEAK_MPI_INIT #ENDIF##WEAKMPIINIT#
-#LAMPI#PROFILEOPT68 = -DTAU_LAMPI #ENDIF#
-PROFILEOPT68 = -DMPICH_IGNORE_CXX_SEEK #ENDIF##MPICH_IGNORE_CXX_SEEK#
-PROFILEOPT73 = -DTAU_MPICH2_MPI_IN_PLACE #ENDIF##MPICH2_MPI_INPLACE#
-
-
-############# RENCI Scalable Trace Lib Options #############
-STFF_DIR=
-SDDF_DIR=
-#RENCI_STFF#PROFILEOPT69 = -DRENCI_STFF -I$(STFF_DIR)/include #ENDIF#
-#RENCI_STFF#TAU_LINKER_OPT11 = -L$(STFF_DIR)/lib -lstff -L$(SDDF_DIR)/lib -lPablo $(TAU_MPI_LIB) #ENDIF#
-#RENCI_STFF#RENCI_STFF_O = RenciSTFF.o #ENDIF#
-
-############# KTAU (again) #############
-#KTAU_SHCTR#PROFILEOPT70 = -DTAUKTAU_SHCTR -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#KTAU#TAU_LINKER_OPT12 = -L$(KTAU_LIB) -lktau #ENDIF#
-
-#MIPS32LINUX#PROFILEOPT71 = -D_ABIN32=2 -D_MIPS_SIM=_ABIN32 #ENDIF#
-
-#BGL#PROFILEOPT72 = -DTAU_BGL -I/bgl/BlueLight/ppcfloor/bglsys/include #ENDIF#
-
-#For F90 support for all platforms
-FWRAPPER = TauFMpi.o
-MPI2EXTENSIONS = TauMpiExtensions.o #ENDIF##MPI2#
-#CRAYX1CC#MPI2EXTENSIONS = #ENDIF#
-
-#SGICOUNTERS#LEXTRA = -lperfex #ENDIF#
-#ALPHATIMERS#LEXTRA = -lrt #ENDIF#
-#SOL2#PCL_EXTRA_LIBS = -lcpc #ENDIF#
-#PCL#LEXTRA = -L$(PCLDIR)/lib -lpcl $(PCL_EXTRA_LIBS) #ENDIF#
-#PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#IA64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi #ENDIF#
-#X86_64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR)/ -L$(PAPIDIR)/lib64/ -lpapi -lperfctr #ENDIF#
-#PAPIPFM#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpfm -lpapi -lpfm #ENDIF#
-#SOL2PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -lcpc #ENDIF#
-#IBMPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/usr/lpp/pmtoolkit/lib -L/usr/pmapi/lib -lpmapi#ENDIF#
-#PPC64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#BGLPAPI_RTS#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.rts.a -L/bgl/BlueLight/ppcfloor/bglsys/lib -lbgl_perfctr.rts -lrts.rts -ldevices.rts #ENDIF#
-#BGLPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/bgl/BlueLight/ppcfloor/bglsys/lib -lbgl_perfctr.rts -lrts.rts -ldevices.rts #ENDIF#
-#BGPPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/bgsys/drivers/ppcfloor/runtime/SPI -lSPI.cna #ENDIF#
-#IBM64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi64.a -L/usr/lpp/pmtoolkit/lib -L/usr/pmapi/lib -lpmapi #ENDIF#
-#IBM64PAPILINUX#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#SGI64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi64 #ENDIF#
-#ALPHAPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a /usr/lib/dcpi/dadd.a -lclu -lrt #ENDIF#
-
-
-
-# By default make TAU_PAPI_RPATH null. Support it on a compiler by compiler basis.
-#PAPI###TAU_PAPI_RPATH = -rpath $(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#PAPI##TAU_PAPI_RPATH = #ENDIF#
-#PPC64PAPI#TAU_PAPI_RPATH = #ENDIF#
-#BGLPAPI#TAU_PAPI_RPATH = #ENDIF#
-#BGPPAPI#TAU_PAPI_RPATH = #ENDIF#
-#USE_INTELCXX#TAU_PAPI_RPATH = #ENDIF#
-#CRAYX1CC#TAU_PAPI_RPATH = #ENDIF#
-TAU_PAPI_RPATH = -R$(PAPIDIR)/$(PAPISUBDIR) #ENDIF##PGI#
-#GNU#TAU_PAPI_RPATH = -Wl,-rpath $(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#USE_PATHCC#TAU_PAPI_RPATH = #ENDIF#
-
-# if the user has specified -cc=gcc -c++=g++ -fortran=intel, we shouldn't use -rpath
-# because they are likely going to link with ifort
-#INTEL32_FORTRAN#TAU_PAPI_RPATH = #ENDIF#
-#SOL2PAPI#TAU_PAPI_RPATH = #ENDIF#
-#IBMPAPI#TAU_PAPI_RPATH = #ENDIF#
-#IBM64PAPI#TAU_PAPI_RPATH = #ENDIF#
-#PAPI#TAU_LINKER_OPT1 = $(TAU_PAPI_RPATH) #ENDIF#
-
-#PTHREAD_AVAILABLE#LEXTRA1 = -lpthread #ENDIF#
-#TULIPTHREADS#LEXTRA1 = -L$(TULIPDIR)/Tuliplib -ltulip #ENDIF#
-#SMARTS##include $(TAU_INC_DIR)/makefiles/GNUmakefile-$(HOSTTYPE) #ENDIF#
-#SMARTS#LEXTRA1 = $(LSMARTS) #ENDIF#
-
-TAU_GCCLIB = -lgcc_s
-#INTEL32_ON_64#TAU_GCCLIB = -lgcc #ENDIF#
-#FREEBSD#TAU_GCCLIB = -lgcc #ENDIF#
-#BGL#TAU_GCCLIB = -lgcc #ENDIF#
-#GNU#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#OPEN64ORC_FORTRAN#TAU_FORTRANLIBS = -lfortran -lffio #ENDIF#
-#PATHSCALE_FORTRAN#TAU_FORTRANLIBS = -lpathfstart -lpathfortran #ENDIF#
-#SC_PATHSCALE#TAU_FORTRANLIBS = -lpathfstart -lpathfortran #ENDIF#
-#NAGWARE_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/quickfit.o -L$(EXTRADIR)/lib -lf96 #ENDIF#
-#G95_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR) -lf95 #ENDIF#
-#GNU_FORTRAN#TAU_FORTRANLIBS = -lg2c #ENDIF#
-#GNU_GFORTRAN#TAU_FORTRANLIBS = -lgfortran -lgfortranbegin #ENDIF#
-#SC_GFORTRAN#TAU_FORTRANLIBS = -lgfortran -lgfortranbegin #ENDIF#
-#SGI_FORTRAN#TAU_FORTRANLIBS = -lfortran -lftn #ENDIF#
-#USE_IBMXLC#TAU_IBM_FORTRANLIBS = -bh:4 -bpT:0x10000000 -bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-#GNU#TAU_IBM_FORTRANLIBS = -Wl,-bh:4 -Wl,-bpT:0x10000000 -Wl,-bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-#KAI#TAU_IBM_FORTRANLIBS = --backend -bh:4 --backend -bpT:0x10000000 --backend -bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-#IBM_FORTRAN#TAU_FORTRANLIBS = $(TAU_IBM_FORTRANLIBS) #ENDIF#
-
-#USE_IBMXLC#TAU_IBM64_FORTRANLIBS = -bh:4 -bpT:0x10000000 -bpD:0x20000000 -b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#GNU#TAU_IBM64_FORTRANLIBS = -Wl,-bh:4 -Wl,-bpT:0x10000000 -Wl,-bpD:0x20000000 -Wl,-b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#KAI#TAU_IBM64_FORTRANLIBS = --backend -bh:4 --backend -bpT:0x10000000 --backend -bpD:0x20000000 --backend -b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#IBM64_FORTRAN#TAU_FORTRANLIBS = $(TAU_IBM64_FORTRANLIBS) #ENDIF#
-#IBM64_FORTRAN#TAU_FORLIBDIR=lib64 #ENDIF#
-#IBM_FORTRAN#TAU_FORLIBDIR=lib #ENDIF#
-#BGL#TAU_FORLIBDIR=blrts_dev_lib #ENDIF#
-#BGP#TAU_FORLIBDIR=bglib #ENDIF#
-#PPC64#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -lxlf90 -lxlfmath -lxl #ENDIF#
-#BGL#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -L$(EXTRADIR)/blrts_lib -lxlf90 -lxlfmath -lxl #ENDIF#
-
-#BGP#TAU_BGL_OMP_SERIAL= -lxlomp_ser #ENDIF#
-#OPENMP#TAU_BGL_OMP_SERIAL= #ENDIF#
-#BGP#TAU_OMP_SERIAL=$(TAU_BGL_OMP_SERIAL) #ENDIF#
-#BGP#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -lxlf90 -lxlfmath $(TAU_OMP_SERIAL) #ENDIF#
-
-#IBMXLFAPPLE#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib -lxlf90 -lxlfmath -lxl #ENDIF#
-
-#CRAY_FORTRAN#TAU_FORTRANLIBS = #ENDIF#
-#CRAY_X1_FORTRAN#TAU_FORTRANLIBS = #ENDIF#
-TAU_FORTRANLIBS = $(EXTRADIR)/lib/f90main.o -lpgf90 -lpgf90rtl -lpgf90_rpm1 -lpgf902 -lpgftnrtl -lrt #ENDIF##PGI_FORTRAN#
-#HP_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib/pa2.0 -lF90 -lcl #ENDIF#
-#INTEL_FORTRAN#TAU_FORTRANLIBS = -lcprts -lPEPCF90 #ENDIF#
-#INTEL32_FORTRAN#TAU_FORTRANLIBS = -lcprts -lCEPCF90 -lF90 #ENDIF#
-#INTELIFORT#TAU_FORTRANLIBS = -lcprts #ENDIF#
-#INTEL81FIX#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -lcxa -lunwind -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#INTEL10FIX#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#INTELCXXLIBICC#TAU_FORTRANLIBS = -lcprts -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#PGI1.7#LEXTRA = -lstd -lstrm#ENDIF#
-#PGI1.7#TAUHELPER = $(TAUROOT)/src/Profile/TauPGIHelper.cpp #ENDIF#
-# LINKER OPTIONS
-TAU_LINKER_OPT2 = $(LEXTRA)
-
-
-#ACC#TAUHELPER = -AA #ENDIF#
-#FUJITSU_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj9i6 -lfj9f6 -lfj9e6 #ENDIF#
-#FUJITSU_SOLARIS#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj90l -lfj90f #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS = -lfui -lfsumai -lfprodai -lfminlai -lfmaxlai -lfminvai -lfmaxvai -lfsu -lsunmath #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS_SUN_OPTERON = -lfsu -lsunmath #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS_SUNCC = -lfsu #ENDIF#
-#SUN386I#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUN_OPTERON) #ENDIF#
-#SUNX86_64#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUN_OPTERON) #ENDIF#
-#SUNCC#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUNCC) #ENDIF#
-#SOL2#EXTRALIBS = -lsocket -lnsl #ENDIF#
-#SUN386I#EXTRALIBS = -lsocket -lnsl -lrt #ENDIF#
-#SUNX86_64#EXTRALIBS = -lsocket -lnsl -lrt #ENDIF#
-#COMPAQ_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/cmplrs/fort90/for_main.o -L$(EXTRADIR)/lib -L$(EXTRADIR)/lib/cmplrs/fort90 -L$(EXTRADIR)/lib/cmplrs/fort90 -lUfor -lfor -lFutil -lm -lmld -lexc -lc #ENDIF#
-#ABSOFT_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib -lfio -lf90math -lU77 -lf77math -lfio #ENDIF#
-#LAHEY_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj9i6 -lfj9f6 -lfj9e6 -lfccx86_6a #ENDIF#
-#LAHEY64_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib64/fj90rt0.o -L$(EXTRADIR)/lib64 -lfj90f -lfj90i -lelf #ENDIF#
-#HITACHI_FORTRAN#TAU_FORTRANLIBS = -lf90 -lhf90math #ENDIF#
-#NEC_FORTRAN#TAU_FORTRANLIBS = -f90lib #ENDIF#
-#COMPAQ_GUIDEF90#TAU_FORTRANLIBS = $(EXTRADIR)/lib/cmplrs/fort90/for_main.o -lfor #ENDIF#
-
-
-#HITACHI#TAU_HITACHI_EXTRA = -L/usr/local/lib -llrz32 #ENDIF#
-
-## To use the standard F90 linker instead of TAU_LINKER + TAU_FORTRANLIBS, add
-#GNU#TAU_CXXLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#GNU#TAU_GNUCXXLIBS = -L$(TAUGCCLIBDIR) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#OPEN64ORC#TAU_CXXLIBS = -lstdc++ #ENDIF#
-#PATHSCALE_FORTRAN#TAU_CXXLIBS = -lstdc++ #ENDIF#
-#LAHEY_FORTRAN#TAU_CXXLIBS = $(TAU_GNUCXXLIBS) /usr/lib/libc.a #ENDIF#
-#NAGWARE_FORTRAN#TAU_CXXLIBS = $(TAU_GNUCXXLIBS) /usr/lib/libc.a #ENDIF#
-TAU_CXXLIBS = -lstd -lC #ENDIF##PGI#
-#CRAYCNL#TAU_CXXLIBS = -L$(EXTRADIR)/lib -lstd -lC -lpgc #ENDIF#
-#CRAYX1CC#TAU_CXXLIBS = -L/opt/ctl/CC/CC/lib -lC #ENDIF#
-
-TAU_SGI_INIT = /usr/lib32/c++init.o
-#ENABLE64BIT#TAU_SGI_INIT = /usr/lib64/c++init.o #ENDIF#
-#ENABLEN32BIT#TAU_SGI_INIT = /usr/lib32/c++init.o #ENDIF#
-#ENABLE32BIT#TAU_SGI_INIT = /usr/lib/c++init.o #ENDIF#
-
-#SGICC#TAU_CXXLIBS = $(TAU_SGI_INIT) -lC #ENDIF#
-#APPLECXX#TAU_CXXLIBS = -lstd -lC #ENDIF#
-#SOL2#TAU_CXXLIBS = -lCstd -lCrun #ENDIF#
-#SOL2CC#TAU_CXXLIBS_SUN_OPTERON = -lCstd -lCrun -lm #ENDIF#
-#SUNCC#TAU_CXXLIBS_SUNCC = -lCstd -lCrun #ENDIF#
-#SUN386I#TAU_CXXLIBS = $(TAU_CXXLIBS_SUN_OPTERON) #ENDIF#
-#SUNCC#TAU_CXXLIBS = $(TAU_CXXLIBS_SUNCC) #ENDIF#
-#SUNX86_64#TAU_CXXLIBS = $(TAU_CXXLIBS_SUN_OPTERON) #ENDIF#
-#FUJITSU_SOLARIS#TAU_CXXLIBS = -lstd -lstdm #ENDIF#
-#PPC64#TAU_XLCLIBS = -L$(EXTRADIRCXX)/$(TAU_FORLIBDIR) -libmc++ -lstdc++ #ENDIF#
-#IBMXLCAPPLE#TAU_FORLIBDIR =lib #ENDIF#
-#IBMXLCAPPLE#TAU_XLCLIBS = -L$(EXTRADIRCXX)/$(TAU_FORLIBDIR) -libmc++ -lstdc++ #ENDIF#
-#BGL#TAU_XLCLIBS = -L$(EXTRADIRCXX)/blrts_dev_lib -L$(EXTRADIRCXX)/blrts_lib -libmc++ -L/bgl/BlueLight/ppcfloor/blrts-gnu/powerpc-bgl-blrts-gnu/lib -lstdc++ #ENDIF#
-#BGP#TAU_XLCLIBS = -L$(EXTRADIRCXX)/bglib -libmc++ -lstdc++ #ENDIF#
-#SP1#TAU_XLCLIBS = -lC #ENDIF#
-#USE_IBMXLC#TAU_CXXLIBS = $(TAU_XLCLIBS) #ENDIF#
-#USE_DECCXX#TAU_CXXLIBS = -lcxxstd -lcxx #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS_INTEL = -lcprts -lPEPCF90 #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#INTELIFORT#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#INTEL81FIX#TAU_CXXLIBS_INTEL = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -lcxa -lunwind#ENDIF#
-#INTEL10FIX#TAU_CXXLIBS_INTEL = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#INTELCXXLIBICC#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS = $(TAU_CXXLIBS_INTEL) #ENDIF#
-#APPLECXX#TAU_CXXLIBS = -lstdc++ -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lgcc_s.1 -lSystemStubs #ENDIF#
-
-# EXTERNAL PACKAGES: VAMPIRTRACE
-#VAMPIRTRACE#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEMPI#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.mpi -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEOMPI#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.ompi -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEOMP#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.omp -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-
-# EXTERNAL PACKAGES: EPILOG
-#EPILOG#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGMPI#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.mpi $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGOMPI#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.ompi $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGOMP#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.omp $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-
-# When using shared, we don't want -lelg.mpi or -lvt.mpi showing up
-#FORCESHARED#TAU_LINKER_OPT3=#ENDIF#
-
-TAU_LINKER_OPT4 = $(LEXTRA1)
-#HITACHI_OPENMP#TAU_LINKER_OPT4 = -lcompas -lpthreads -lc_r #ENDIF#
-#OPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#SOL2CC_OPENMP#TAU_LINKER_OPT5 = -xopenmp #ENDIF#
-#SUNCC_OPENMP#TAU_LINKER_OPT5 = -xopenmp=parallel #ENDIF#
-#GNU#TAU_LINKER_OPT5 = #ENDIF#
-#COMPAQCXX_OPENMP#TAU_LINKER_OPT5 = -omp #ENDIF#
-#IBMXLC_OPENMP#TAU_LINKER_OPT5 = -qsmp=omp #ENDIF#
-#OPEN64_OPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#GUIDE#TAU_LINKER_OPT5 = #ENDIF#
-#PGIOPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#INTELOPENMP#TAU_LINKER_OPT5 = -openmp #ENDIF#
-
-# MALLINFO needs -lmalloc on sgi, sun
-#SGIMP#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-#SOL2#TAU_LINKER_OPT6 = #ENDIF#
-#SUN386I#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-#SUNX86_64#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-
-# We need -lCio with SGI CC 7.4+
-#SGICC#TAU_LINKER_OPT7 = -lCio #ENDIF#
-
-# charm
-#TAU_CHARM#TAU_LINKER_OPT8 = -lconv-core #ENDIF#
-
-# extra libs
-#SUN386I#TAU_LINKER_OPT9 = $(EXTRALIBS) #ENDIF#
-#SUNX86_64#TAU_LINKER_OPT9 = $(EXTRALIBS) #ENDIF#
-#SOL2#TAU_LINKER_OPT9 = $(ExTRALIBS) #ENDIF#
-
-#BGL#TAU_LINKER_OPT10 = -L/bgl/BlueLight/ppcfloor/bglsys/lib -lrts.rts #ENDIF#
-
-#USE_IBMXLC#TAU_IBM_PYTHON_SHFLAG = -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp -Wl,-einitpytau#ENDIF#
-#GNU#TAU_IBM_PYTHON_SHFLAG = -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp -Wl,-einitpytau#ENDIF#
-#KAI#TAU_IBM_PYTHON_SHFLAG = --backend -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp --backend -Wl,-einitpytau#ENDIF#
-#ACC#TAU_HPUX_PYTHON_SHFLAG = -lstd_v2 -lCsup_v2 -lm -lcl -lc #ENDIF#
-
-#USE_IBMXLC#TAU_IBM_LD_FLAGS = -binitfini:poe_remote_main #ENDIF#
-#GNU#TAU_IBM_LD_FLAGS = -Wl,-binitfini:poe_remote_main #ENDIF#
-#KAI#TAU_IBM_LD_FLAGS = --backend -binitfini:poe_remote_main #ENDIF#
-
-
-#PYTHON#TAU_IBM_SHFLAGS = $(TAU_IBM_PYTHON_SHFLAG) #ENDIF#
-#PYTHON#TAU_HPUX_SHFLAGS = $(TAU_HPUX_PYTHON_SHFLAG) #ENDIF#
-#SP1#TAU_EXTRA_LIBRARY_FLAGS = $(TAU_IBM_SHFLAGS) #ENDIF#
-#SOL2#TAU_EXTRA_LIBRARY_FLAGS = #ENDIF#
-#SGIMP#TAU_EXTRA_LIBRARY_FLAGS = -lmalloc #ENDIF#
-#HP#TAU_EXTRA_LIBRARY_FLAGS = $(TAU_HPUX_SHFLAGS) #ENDIF#
-
-TAU_MPI_WRAPPER_LIB= -L$(TAU_LIB_DIR) -lTauMpi$(TAU_CONFIG) #ENDIF##MPI#
-#EPILOGMPI#TAU_MPI_WRAPPER_LIB= #ENDIF#
-#EPILOGOMPI#TAU_MPI_WRAPPER_LIB= #ENDIF#
-
-##############################################
-# Build TAU_LINKER_SHOPTS
-#GNU#TAU_IBM_LINKER_SHOPTS=-Wl,-brtl -Wl,-bexpall #ENDIF#
-#USE_IBMXLC#TAU_IBM_LINKER_SHOPTS= -brtl -bexpall #ENDIF#
-#KAI#TAU_IBM_LINKER_SHOPTS= --backend -brtl #ENDIF#
-#SP1#TAU_LINKER_SHOPTS= $(TAU_IBM_LINKER_SHOPTS) #ENDIF#
-
-##############################################
-# MPI _r suffix check (as in libmpi_r)
-#MPI_R_SUFFIX#TAU_MPI_R_SUFFIX=_r #ENDIF#
-
-##############################################
-# Flags to build a shared object: TAU_SHFLAGS
-#GNU#AR_SHFLAGS = -shared #ENDIF#
-AR_SHFLAGS = -shared #ENDIF##PGI#
-#SGICC#AR_SHFLAGS = -shared #ENDIF#
-#APPLECXX#AR_SHFLAGS = -dynamiclib -flat_namespace -undefined suppress #ENDIF#
-#SOL2#AR_SHFLAGS = -G #ENDIF#
-#SUN386I#AR_SHFLAGS = -G #ENDIF#
-#SUNX86_64#AR_SHFLAGS = -G #ENDIF#
-#USE_IBMXLC#AR_SHFLAGS = -G #ENDIF#
-#USE_DECCXX#AR_SHFLAGS = -shared #ENDIF#
-#USE_INTELCXX#AR_SHFLAGS = -shared #ENDIF#
-#ACC#AR_SHFLAGS = -b #ENDIF#
-TAU_SHFLAGS = $(AR_SHFLAGS) -o
-
-############# RANLIB Options #############
-TAU_RANLIB = echo "Built"
-#APPLECXX#TAU_RANLIB = ranlib #ENDIF#
-#IBMXLCAPPLE#TAU_RANLIB = ranlib #ENDIF#
-
-##############################################
-TAU_AR = ar #ENDIF#
-#SP1#TAU_AR = ar -X32 #ENDIF#
-#IBM64#TAU_AR = ar -X64 #ENDIF#
-#PPC64#TAU_AR = ar #ENDIF#
-#IBM64LINUX#TAU_AR = ar #ENDIF#
-
-
-##############################################
-# PDT OPTIONS
-# You can specify -pdtcompdir=intel -pdtarchdir=x86_64
-# If nothing is specified, PDTARCHDIR uses TAU_ARCH
-PDTARCHDIRORIG=$(TAU_ARCH)
-PDTARCHITECTURE=x86_64
-PDTARCHDIRFINAL=$(PDTARCHDIRORIG)
-#PDTARCHITECTURE#PDTARCHDIRFINAL=$(PDTARCHITECTURE)#ENDIF#
-PDTARCHDIR=$(PDTARCHDIRFINAL)
-#PDTARCH#PDTARCHDIR=$(PDTARCHDIRFINAL)/$(PDTCOMPDIR)#ENDIF#
-
-
-##############################################
-
-PROFILEOPTS = $(PROFILEOPT1) $(PROFILEOPT2) $(PROFILEOPT3) $(PROFILEOPT4) \
- $(PROFILEOPT5) $(PROFILEOPT6) $(PROFILEOPT7) $(PROFILEOPT8) \
- $(PROFILEOPT9) $(PROFILEOPT10) $(PROFILEOPT11) $(PROFILEOPT12) \
- $(PROFILEOPT13) $(PROFILEOPT14) $(PROFILEOPT15) $(PROFILEOPT16) \
- $(PROFILEOPT17) $(PROFILEOPT18) $(PROFILEOPT19) $(PROFILEOPT20) \
- $(PROFILEOPT21) $(PROFILEOPT22) $(PROFILEOPT23) $(PROFILEOPT24) \
- $(PROFILEOPT25) $(PROFILEOPT26) $(PROFILEOPT27) $(PROFILEOPT28) \
- $(PROFILEOPT29) $(PROFILEOPT30) $(PROFILEOPT31) $(PROFILEOPT32) \
- $(PROFILEOPT33) $(PROFILEOPT34) $(PROFILEOPT35) $(PROFILEOPT36) \
- $(PROFILEOPT37) $(PROFILEOPT38) $(PROFILEOPT39) $(PROFILEOPT40) \
- $(PROFILEOPT41) $(PROFILEOPT42) $(PROFILEOPT43) $(PROFILEOPT44) \
- $(PROFILEOPT45) $(PROFILEOPT46) $(PROFILEOPT47) $(PROFILEOPT48) \
- $(PROFILEOPT49) $(PROFILEOPT50) $(PROFILEOPT51) $(PROFILEOPT52) \
- $(PROFILEOPT53) $(PROFILEOPT54) $(PROFILEOPT55) $(PROFILEOPT56) \
- $(PROFILEOPT57) $(PROFILEOPT58) $(PROFILEOPT59) $(PROFILEOPT60) \
- $(PROFILEOPT61) $(PROFILEOPT62) $(PROFILEOPT63) $(PROFILEOPT64) \
- $(PROFILEOPT65) $(PROFILEOPT66) $(PROFILEOPT67) $(PROFILEOPT68) \
- $(PROFILEOPT69) $(PROFILEOPT70) $(PROFILEOPT71) $(PROFILEOPT72) \
- $(PROFILEOPT73) $(PROFILEOPT74) $(PROFILEOPT75) $(PROFILEOPT76) \
- $(TRACEOPT)
-
-##############################################
-
-TAU_LINKER_OPTS = $(TAU_LINKER_OPT1) $(TAU_LINKER_OPT2) $(TAU_LINKER_OPT3) \
- $(TAU_LINKER_OPT4) $(TAU_LINKER_OPT5) $(TAU_LINKER_OPT6) \
- $(TAU_LINKER_OPT7) $(TAU_LINKER_OPT8) $(TAU_LINKER_OPT9) \
- $(TAU_LINKER_OPT10) $(TAU_LINKER_OPT11) $(TAU_LINKER_OPT12)
-
-##############################################
-
-############# TAU Fortran ####################
-TAU_LINKER=$(TAU_CXX)
-#INTEL_FORTRAN##TAU_LINKER=$(TAU_F90) #ENDIF#
-#INTEL32_FORTRAN##TAU_LINKER=$(TAU_F90) #ENDIF#
-# Intel efc compiler acts as a linker - NO. Let C++ be the linker.
-
-##############################################
-############# TAU Options ####################
-TAUDEFS = $(PROFILEOPTS)
-
-TAUINC = -I$(TAU_INC_DIR)
-
-TAULIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -ltau$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-
-TAUMPILIBS = $(TAU_MPI_LIB)
-
-TAUMPIFLIBS = $(TAU_MPI_FLIB)
-
-### ACL S/W requirement
-TAU_DEFS = $(TAUDEFS)
-
-TAU_INCLUDE = -I$(TAU_INC_DIR)
-#PERFLIB#TAU_INCLUDE = -I$(PERFINCDIR) #ENDIF#
-#PERFLIB#TAU_DEFS = #ENDIF#
-#PERFLIB#TAU_COMPILER_EXTRA_OPTIONS=-optTau=-p #ENDIF#
-
-TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/Memory
-#IBMXLCAPPLE#TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/MemoryWrapper #ENDIF#
-#APPLECXX#TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/MemoryWrapper #ENDIF#
-
-TAU_LIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -ltau$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-#PERFLIB#TAU_LIBS = #ENDIF#
-
-TAU_SHLIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAUsh$(TAU_CONFIG) $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS) $(TAU_MPI_LIB)
-#PERFLIB#TAU_SHLIBS = #ENDIF#
-TAU_EXLIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAU $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS) $(TAU_MPI_LIB)
-
-TAU_SHLIBS_NOSHOPTS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAUsh$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-
-TAU_DISABLE = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTauDisable
-
-TAU_MPI_INCLUDE = $(TAU_MPI_INC)
-
-TAU_MPI_LIBS = $(TAU_MPI_LIB)
-
-TAU_MPI_FLIBS = $(TAU_MPI_FLIB)
-
-## TAU TRACE INPUT LIBRARY (can build a trace converter using TAU TIL)
-TAU_TRACE_INPUT_LIB = -L$(TAU_LIB_DIR) -lTAU_traceinput$(TAU_CONFIG)
-
-## Don't include -lpthread or -lsmarts. Let app. do that.
-#############################################
-## IBM SPECIFIC CHANGES TO TAU_MPI_LIBS
-#SP1#TAU_MPI_LDFLAGS = $(TAU_IBM_LD_FLAGS) #ENDIF#
-TAU_LDFLAGS = $(TAU_MPI_LDFLAGS) #ENDIF##MPI#
-#SP1#TAU_IBM_MPI_LIBS = $(TAU_MPI_LIB) -L$(TAU_MPILIB_DIR)/ip -lvtd$(TAU_MPI_R_SUFFIX) #ENDIF#
-#SP1#TAU_IBM_FMPI_LIBS = $(TAU_MPI_FLIB) -L$(TAU_MPILIB_DIR)/ip -lvtd$(TAU_MPI_R_SUFFIX) #ENDIF#
-#SP1#TAU_MPI_LIBS_FLAGS= $(TAU_IBM_MPI_LIBS) #ENDIF#
-#SP1#TAU_MPI_FLIBS_FLAGS = $(TAU_IBM_MPI_FLIBS) #ENDIF#
-TAU_MPI_LIBS_FLAGS = $(TAU_MPI_LIB) #ENDIF##MPI#
-TAU_MPI_FLIBS_FLAGS = $(TAU_MPI_FLIB) #ENDIF##MPI#
-TAU_MPI_LIBS = $(TAU_MPI_LIBS_FLAGS) #ENDIF##MPI#
-TAU_MPI_FLIBS = $(TAU_MPI_FLIBS_FLAGS) #ENDIF##MPI#
-
-#SP1#TAUMPILIBS = $(TAU_MPI_LIBS) #ENDIF#
-#SP1#TAUMPIFLIBS = $(TAU_MPI_FLIBS) #ENDIF#
-#############################################
-#SHMEM#TAU_SHMEM_OBJS = TauShmemCray.o #ENDIF#
-#SP1#TAU_SHMEM_OBJS = TauShmemTurbo.o #ENDIF#
-#GPSHMEM#TAU_SHMEM_OBJS = TauShmemGpshmem.o #ENDIF#
-
-TAU_SHMEM_INCLUDE = $(TAU_SHMEM_INC)
-
-TAU_SHMEM_LIBS = -L$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/ -lTauShmem$(TAU_CONFIG) $(TAU_SHMEM_LIB)
-#############################################
-# TAU COMPILER SHELL SCRIPT OPTIONS
-TAUCOMPILEROPTS= -optPdtDir="$(PDTDIR)/${PDTARCHDIR}"\
- -optPdtCOpts="$(TAU_INCLUDE) $(TAU_DEFS) $(TAU_MPI_INCLUDE)"\
- -optPdtCxxOpts="$(TAU_INCLUDE) $(TAU_DEFS) $(TAU_MPI_INCLUDE)"\
- -optTauInstr="$(TAU_BIN_DIR)/tau_instrumentor" \
- -optNoMpi \
- -optOpariDir="$(OPARIDIR)" -optOpariTool="$(TAU_OPARI_TOOL)" \
- -optTauCC="$(TAU_CC)" \
- -optTauIncludes="$(TAU_INCLUDE) $(TAU_MPI_INCLUDE)" \
- -optTauDefs="$(TAU_DEFS)" \
- -optTauCompile="$(TAU_INCLUDE) $(TAU_MPI_INCLUDE) $(TAU_DEFS) "\
- -optLinking="$(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS)"\
- -optSharedLinking="$(TAU_MPI_FLIBS) $(TAU_EXLIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS)"\
- $(TAU_COMPILER_EXTRA_OPTIONS) \
- -optIncludeMemory="$(TAU_INCLUDE_MEMORY)"
-#############################################
-
-TAU_SHAREDLIBS=$(TAUHELPER) -L$(TAU_LIB_DIR) -lTAU $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS)
-SHAREDEXTRAS=
-#FORCESHARED#SHAREDEXTRAS=-optSharedLinkReset="$(TAU_SHAREDLIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS) $(TAU_MPI_NOWRAP_FLIB)" -optShared #ENDIF#
-TAU_COMPILER=$(TAU_BIN_DIR)/tau_compiler.sh $(TAUCOMPILEROPTS) $(SHAREDEXTRAS)
-#############################################
-# These options could be included in the application Makefile as
-#CFLAGS = $(TAUDEFS) $(TAUINC)
-#
-#LIBS = $(TAULIBS)
-#
-# To run the application without Profiling/Tracing use
-#CFLAGS = $(TAUINC)
-# Don't use TAUDEFS but do include TAUINC
-# Also ignore TAULIBS when Profiling/Tracing is not used.
-#############################################
-
+++ /dev/null
-CPPFLAGS = -WF,-DUNRES -WF,-DMP -WF,-DMPI -WF,-DSPLITELE -WF,-DISNAN -WF,-DAIX
-#-DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-INSTALL_DIR =
-#
-FC= mpxlf90 -qfixed -w
-
-OPT = -q64
-
-FFLAGS = -c ${OPT} -O3
-FFLAGS1 = -c ${OPT} -O2
-FFLAGS2 = -c ${OPT} -O
-FFLAGSE = -c ${OPT} -O4
-
-
-BIN = ${HOME}/UNRES/bin/unres_MD.exe
-LIBS = -qipa
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o REMD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure.o gnmr1.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
+++ /dev/null
-#
-FC= ftn
-OPT = -fast \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
--Mprefetch=distance:8,nta
-
-#OPT = -C -g
-#OPT1 = -g -fast
-OPT1 = ${OPT}
-#OPT2 = -fast
-OPT2 = ${OPT}
-OPTE = ${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-
-CFLAGS = -DSGI -c
-
-BIN = ../bin/unres_MD_Tc_procor-newmat-novec-noparint_barrier_corr-split.exe
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 \
-#-DTIMING \
-#-DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DPARVEC #-DPARINT -DPARINTDER
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-FC= ftn
-OPT = -fast \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
--Mprefetch=distance:8,nta
-
-#OPT = -C -g
-#OPT1 = -g -fast
-OPT1 = -fast
-OPT2 = -fast
-OPT2 = ${OPT}
-OPTE = ${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-
-CFLAGS = -DSGI -c
-
-BIN = ../bin/unres_MD_Tc_procor-newmat-novec-noparint_barrier_corr-split-oldparm.exe
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-#FC= ftn
-TAU_MAKEFILE=/usr/local/packages/TAU-2.17/tau-2.17/xt3/lib/Makefile.tau-mpi-pdt-pgi
-FC=tau_f90.sh
-OPT = -fast \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
--Mprefetch=distance:8,nta
-
-#OPT = -C -g
-#OPT1 = -g -fast
-OPT1 = -fast
-OPT2 = -fast
-OPT2 = ${OPT}
-OPTE = ${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-
-CFLAGS = -DSGI -c
-
-BIN = ../bin/unres_MD_Tc_procor-newmat-noparint-barrier-tau.exe
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 -DPARVEC
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.pp.[fF] *.pp.inst.[fF]
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-FC=/bgsys/drivers/ppcfloor/comm/bin/mpixlf77
-OPT = -O4 -qarch=450 -qtune=450
-#OPT = -O3 -qarch=450 -qtune=450 -qdebug=function_trace
-#OPT = -O -qarch=450 -qtune=450
-#OPT = -O0 -C -g -qarch=450 -qtune=450 #-qdebug=function_trace
-#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
-#-Mprefetch=distance:8,nta
-
-#OPT1 = -O -g -qarch=450 -qtune=450
-#OPT1 = -O -g -qarch=450 -qtune=450 -qdebug=function_trace
-OPT1 = ${OPT}
-#OPT2 = -O2 -qarch=450 -qtune=450
-#OPT2 = -O2 -qarch=450 -qtune=450 -qdebug=function_trace
-OPT2 = ${OPT}
-#OPTE = -O4 -qarch=450 -qtune=450
-#OPTE = -O4 -qarch=450 -qtune=450
-OPTE=${OPT}
-
-CFLAGS = -c
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_MD_Tc_procor-newparm-O4-parcorr.exe
-#BIN = ../bin/unres_MD_Tc_procor-newparm-O4-PARINT-parcorr.exe
-#BIN = ../bin/unres_MD_Tc_procor-newparm-parvecmatint-O4-notau1.exe
-#BIN = ../bin/unres_MD_Tc_procor-newparm-O4-notau1.exe
-#LIBS = xdrf/libxdrf.a /home/liwo/UNRES/LIB/libmemmon.a
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -WF,-DAIX -WF,-DISNAN -WF,-DUNRES -WF,-DMP -WF,-DMPI -WF,-DPGI \
- -WF,-DSPLITELE -WF,-DPROCOR -WF,-DAMD64 -WF,-DLANG0
-#-WF,-DPARINT -WF,-DPARINTDER
-#-WF,-DPARVEC -WF,-DPARMAT -WF,-DMATGATHER
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-obj: ${object}
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- ${CC} -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} add.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-compinfo: compinfo.c
- ${CC} ${CFLAGS} compinfo.c
+++ /dev/null
-CPPFLAGS = -WF,-DOLD_GINV \
- -WF,-DUNRES -WF,-DMP -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DISNAN \
- -WF,-DAIX -WF,-DLANG0 -WF,-DPROCOR
-#-WF,-DNOXDR
-#-WF,-DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-BGLSYS = /bgl/BlueLight/ppcfloor/bglsys
-
-CC = /usr/bin/blrts_xlc
-CPPC = /usr/bin/blrts_xlc
-FC = /usr/bin/blrts_xlf90
-#-pg -g
-
-# try -qarch=440 first, then use -qarch=440d for 2nd FPU later on
-# (SIMDization requires at least -O3)
-# use -qlist -qsource with 440d and look for Parallel ASM instructions.
-#
-OPT= -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440 -qfixed -w -qnosave
-CFLAGS= -O3 -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440
-FFLAGS= -c -O3 ${OPT}
-#
-LIBS_MPI = -lmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-LIBSF_MPI = -lmpich.rts -lfmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-
-FFLAGS1 = -c ${OPT} -O2
-FFLAGS2 = -c ${OPT} -O
-FFLAGSE = -c ${OPT} -O4
-
-
-BIN = ${HOME}/UNRES/bin/unres_Tc_procor_150aa.rts
-#BIN = ${HOME}/UNRES/bin/unres_Tc_oldginv_noprocor.rts
-LIBS = ${LIBSF_MPI} xdrf/libxdrf.a
-#LIBS = ${LIBSF_MPI}
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure.o gnmr1.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
+++ /dev/null
-CPPFLAGS = -WF,-DOLD_GINV \
- -WF,-DUNRES -WF,-DMP -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DISNAN \
- -WF,-DAIX -WF,-DLANG0 -WF,-DPROCOR
-#-WF,-DNOXDR
-#-WF,-DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-BGLSYS = /bgl/BlueLight/ppcfloor/bglsys
-
-CC = /usr/bin/blrts_xlc
-CPPC = /usr/bin/blrts_xlc
-FC = /usr/bin/blrts_xlf90
-#-pg -g
-
-# try -qarch=440 first, then use -qarch=440d for 2nd FPU later on
-# (SIMDization requires at least -O3)
-# use -qlist -qsource with 440d and look for Parallel ASM instructions.
-#
-OPT= -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440 -qfixed -w -qnosave
-CFLAGS= -O3 -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440
-FFLAGS= -c -O3 ${OPT}
-FFLAGS= -c -C -g ${OPT}
-#
-LIBS_MPI = -lmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-LIBSF_MPI = -lmpich.rts -lfmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-
-FFLAGS1 = -c ${OPT} -O2
-FFLAGS2 = -c ${OPT} -O
-FFLAGSE = -c ${OPT} -O4
-
-
-BIN = ${HOME}/UNRES/bin/unres_Tc_procor_150aa_newparm.rts
-LIBS = ${LIBSF_MPI} xdrf/libxdrf.a
-#LIBS = ${LIBSF_MPI}
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} add.f
+++ /dev/null
-CPPFLAGS = -WF,-DAIX -WF,-DISNAN -WF,-DUNRES -WF,-DMP -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DPROCOR -WF,-DAMD64 -WF,-DLANG0
-#-WF,-DTIMING_ENE -WF,-DTIMING
-# -WF,-DCRYST_BOND -WF,-DCRYST_THETA -WF,-DCRYST_SC
-
-
-#FC= mpixlf77 -pg
-FC= mpixlf77
-CC= bgcc
-
-OPT = -O3 -qarch=450d -qtune=450
-
-FFLAGS = -c ${OPT}
-FFLAGS1 = -c -g -O3 -qarch=450d -qtune=450
-FFLAGS2 = -c -g -O0 -qarch=450d -qtune=450
-FFLAGSE = -c -O4 -qipa -Q+scalar -qhot=simd -qarch=450d -qtune=450
-
-BIN = ../bin/unres_Tc_procor_new800_jugene.exe
-LIBS = xdrf/libxdrf.a -qipa
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-fitsq.o : fitsq.f
- ${FC} ${FFLAGS2} fitsq.f
+++ /dev/null
-CPPFLAGS = -WF,-DAIX -WF,-DISNAN -WF,-DUNRES -WF,-DMP -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DPROCOR -WF,-DAMD64 -WF,-DLANG0 \
- -WF,-DCRYST_BOND -WF,-DCRYST_THETA -WF,-DCRYST_SC -WF,-DTIMING_ENE
-
-
-#FC= mpixlf77 -pg
-FC= mpixlf77
-CC= bgcc
-
-OPT = -O3 -qarch=450d -qtune=450
-
-FFLAGS = -c ${OPT}
-FFLAGS1 = -c -g -O3 -qarch=450d -qtune=450
-FFLAGS2 = -c -g -O0 -qarch=450d -qtune=450
-FFLAGSE = -c -O4 -qipa -Q+scalar -qhot=simd -qarch=450d -qtune=450
-
-BIN = ../bin/unres_Tc_procor_new700_jugene-oldparm.exe
-LIBS = xdrf/libxdrf.a -qipa
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-fitsq.o : fitsq.f
- ${FC} ${FFLAGS2} fitsq.f
+++ /dev/null
-# mpich def
-INSTALL_DIR = /usr/local/mpich-1.2.0
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifc
-OPT = -O3 -ip -w -pc64 -tpp6
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -tpp6 -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -tpp6 -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -tpp6 -w -O3 -ipo -ipo_obj -pc64 -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ${HOME}/UNRES/NEW/bin/unres_ifc8.exe
-LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib -openmp
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o entmcm.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o proc_proc.o mcmf.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o
-#fputrap.o zscore.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objectCSA} cinfo.o ${LIBS} -Wl,-Bstatic -o ${BIN}
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.f
- ${FC} ${FFLAGS} ${CPPFLAGS} test.f
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = unres_Tc_procor_new_em64.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure3.o econstr_local.o gnmr1.o check_sc_map.o check_bond.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} -static-libcxa ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
- mv ${BIN} ../bin
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-readrtns_CSA.o : readrtns_CSA.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} readrtns_CSA.F
-
-MREMD.o : MREMD.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} MREMD.F
-
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-INSTALL_DIR = /opt/mpi/mvapich
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-FCL = ${INSTALL_DIR}/bin/mpif77
-CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_Tc_procor_new_em64-lang-D-1000.exe
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unresCSA: ${object}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-readrtns_CSA.o : readrtns_CSA.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} readrtns_CSA.F
-
-MREMD.o : MREMD.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} MREMD.F
-
-fitsq.o : fitsq.f
- ${FC} ${FFLAGS2} fitsq.f
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN -DAMD64 \
- -DPROCOR \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh/
-INSTALL_DIR = /opt/mpi/mvapich
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-FCL = ${INSTALL_DIR}/bin/mpif77
-CC = cc
-
-OPT = -O3 -ip -w
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_Tc_procor_new_em64-lang-oldparm-D-1000.exe
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread xdrf_em64/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unresCSA: ${object}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} -static-libcxa ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-readrtns_CSA.o : readrtns_CSA.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} readrtns_CSA.F
-
-MREMD.o : MREMD.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} MREMD.F
-
-fitsq.o : fitsq.f
- ${FC} ${FFLAGS2} fitsq.f
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DUNRES -DMP -DMPI -DPGI -DISNAN \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-#INSTALL_DIR = /users/software/mpich2.x86_64/
-INSTALL_DIR = /opt/mpi/mvapich2
-
-FC= ifort
-FCL= ${INSTALL_DIR}/bin/mpif77
-
-OPT = -O3 -ip -w -xO
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -xO -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_Tc_procor_new_em64_mpich2-lang.exe
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf_em64/libxdrf.a -lpthread
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-MD_A-MTS.o : MD_A-MTS.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS2} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI \
- -DPGI -DSPLITELE -DISNAN \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-## -DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-#INSTALL_DIR = /usr/local/mpich-1.2.0
-INSTALL_DIR = /usr/local/mpich-1.2.7p1_intel-8.0_ssh
-#
-#FC= /usr/local/opt/intel/compiler60/ia32/bin/ifc
-FC= ifort
-
-OPT = -O3 -ip -w -pc64 -tpp6
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -tpp6 -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -tpp6 -w -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -tpp6 -w -O3 -ipo -ipo_obj -pc64 -opt_report -I$(INSTALL_DIR)/include
-
-BIN = unres_Tc_noprocor.exe
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_ifort -lmpich xdrf/libxdrf.a
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a -g -d2 -CA -CB
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure3.o econstr_local.o gnmr1.o check_sc_map.o check_bond.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} -static-libcxa ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
- mv ${BIN} ../bin
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-readrtns_CSA.o : readrtns_CSA.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} readrtns_CSA.F
-
-MREMD.o : MREMD.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} MREMD.F
-
+++ /dev/null
-FC= mpif90
-OPT = -fast -pc 64 -tp p6 \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-#OPT = -C -g -fast -pc 64 -tp p6
-
-OPT1 = -C -g -fast -pc 64 -tp p6
-#OPT = -C -g
-
-# -Mvect <---slows down
-# -Minline=name:matmat2 <---false convergence
-
-CFLAGS = -DSGI
-FFLAGS = -c ${OPT}
-FFLAGS1 = -c ${OPT1}
-
-BIN = /users/adam/MEY_MD/bin/unres_MD_Tc-fine-newmat.exe
-LIBS = -Lxdrf -lxdrf
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 -DPARVEC #-DPARINT -DPARINTDER
-#-DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -Wl,-Bstatic -o ${BIN}
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-fitsq.o: fitsq.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} fitsq.f
-
-rmsd.o: rmsd.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} rmsd.F
-
-contact.o: contact.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} contact.f
-
-minim_jlee.o: minim_jlee.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} minim_jlee.F
-
-minimize_p.o: minimize_p.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} minimize_p.F
-
-gen_rand_conf.o: gen_rand_conf.F
- ${FC} ${FFLAGS} ${CPPFLAGS} gen_rand_conf.F
-
-
-test.o: test.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} test.F
-
-elecont.o: elecont.f
- ${FC} ${FFLAGS} ${CPPFLAGS} elecont.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS} ${CPPFLAGS} add.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-compinfo: compinfo.c
- ${CC} ${CFLAGS} compinfo.c
+++ /dev/null
-#
-FC= f90
-OPT = -arch ev67 -tune ev67 -fast -fpe1 -f77
-OPT1 = -arch ev67 -tune ev67 -fast -fpe1 -f77
-#OPT1 = -fast -g3 -arch ev67 -fpe4 -f77 -C
-#OPT = -g3 -arch ev67 -tune ev67 -C -fpe1 -f77
-
-FFLAGS = -c ${OPT}
-FFLAGS1 = -c ${OPT1}
-
-BIN = ${HOME}/UNRES/MD/bin/unres_MD_procor-Tc.exe
-LIBS = -lmpi -lelan xdrf/libxdrf.a
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI -DOSF -DSPLITELE -DPROCOR -DISNAN
-#CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI -DOSF -DISNAN -DSPLITELE
-#-DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-.c.o:
- ${CC} -c ${CPPFLAGS} $*.c
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split.o \
- q_measure.o gnmr1.o
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-together.o: together.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} test.F
-
-elecont.o: elecont.f
- ${FC} ${FFLAGS} ${CPPFLAGS} elecont.f
-
-gen_rand_conf.o:gen_rand_conf.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} gen_rand_conf.F
-
-djacob.o: djacob.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} djacob.f
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} chainbuild.F
-cartder.o: cartder.F
- ${FC} ${FFLAGS1} ${CPPFLAGS} cartder.F
-
+++ /dev/null
-CC= icl.exe
-FC= ifl.exe
-
-FFLAGS = /Qlowercase /c /Qip /Qfpp2 /Ox /G6 /w90 /w /cm /DUNRES /DMOMENT /DMP /DMPI /DPGI /DWINIFL
-CCFLAGS = /c /Qlowercase /DUNRES /DMOMENT /DMP /DMPI /DPGI /DWIN /DWINIFL
-LDFLAGS = /ounres_ifl.exe C:\\Progra~1\\MPIPro\\lib\\MPIPro.lib \
- C:\\Progra~1\\MPIPro\\lib\\MPIPro_abs.lib
-
-all: unresCSA
-
-.SUFFIXES: .f .c
-
-.f.o:
- $(FC) $(FFLAGS) $*.f
- touch $*.o
-.F.o:
- $(FC) $(FFLAGS) $*.F
- touch $*.o
-.c.o:
- $(CC) $(CCFLAGS) $*.c
- touch $*.o
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o entmcm.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o proc_proc.o mcmf.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o
-#fputrap.o zscore.o
-
-objectCSAobj = unres_CSA.obj arcos.obj cartprint.obj chainbuild.obj convert.obj initialize_p.obj \
- matmult.obj readrtns_CSA.obj parmread.obj gen_rand_conf.obj printmat.obj map.obj \
- pinorm.obj randgens.obj rescode.obj intcor.obj timing.obj misc.obj intlocal.obj \
- cartder.obj checkder_p.obj energy_p_new.obj gradient_p.obj minimize_p.obj sumsld.obj \
- cored.obj rmdd.obj geomout.obj readpdb.obj regularize.obj thread.obj fitsq.obj mcm.obj \
- mc.obj bond_move.obj refsys.obj check_sc_distr.obj contact.obj djacob.obj entmcm.obj \
- together.obj csa.obj minim_jlee.obj shift.obj diff12.obj bank.obj newconf.obj ran.obj \
- indexx.obj MP.obj compare_s1.obj prng_32.obj proc_proc.obj mcmf.obj \
- test.obj banach.obj distfit.obj rmsd.obj elecont.obj dihed_cons.obj
-
-unresCSA: $(objectCSA)
- $(FC) $(FFLAGS) cinfo.f
- $(FC) $(LDFLAGS) $(objectCSAobj) cinfo.obj
-link:
- $(FC) $(LDFLAGS) $(objectCSAobj) cinfo.obj
-
-clean:
- del *.obj
- del *.o
-
+++ /dev/null
-CC= pgcc
-FC= pgf90
-OPT = -fast -pc 64 -tp p6 \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-
-#FFLAGS = -c $(OPT) -Ic:/progra~1/mpipro/include
-FFLAGS = -c $(OPT) -Ih:/users/czarek/mpipro/include
-
-LIBS = c:/progra~1/mpipro/lib/MPIPro_pgf.lib \
- c:/progra~1/mpipro/lib/MPIPro.lib
-
-CPPFLAGS = -DUNRES -DMP -DMPI -DPGI -DWINPGI
-#-DMOMENT
-#-DCRYST_TOR
-#-DDEBUG
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- $(FC) $(FFLAGS) $(CPPFLAGS) $*.F
-.c.o:
- $(CC) -c $(CPPFLAGS) $*.c
-
-
-objectCSA = unres_CSA.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o energy_p_new.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o contact.o djacob.o entmcm.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o proc_proc.o mcmf.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o
-#fputrap.o
-
-unresCSA: $(objectCSA)
- $(FC) $(FFLAGS) cinfo.f
- $(FC) $(OPT) $(objectCSA) cinfo.o $(LIBS) -o unres_pg
-
-clean:
- /bin/rm *.o
-
-Makefile_MPICH_ifort
\ No newline at end of file
+Makefile_MPICH_gfortran
\ No newline at end of file
+++ /dev/null
-#
-FC1=/bgsys/drivers/ppcfloor/comm/bin/mpixlf77
-FC=tau_f90.sh
-OPT = -O3 -qarch=450 -qtune=450 -qfixed
-#OPT = -O3 -qarch=450 -qtune=450 -qdebug=function_trace -qfixed
-#OPT = -O -qarch=450 -qtune=450 -qfixed
-#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
-#-Mprefetch=distance:8,nta
-
-#OPT = -O0 -C -g -qarch=450 -qtune=450 -qfixed
-OPT1 = -O0 -g -qarch=450 -qtune=450 -qfixed
-OPT2 = -O2 -qarch=450 -qtune=450 -qfixed
-#OPT2 = -O2 -qarch=450 -qtune=450 -qdebug=function_trace -qfixed
-#OPT2 = ${OPT}
-OPTE = -O4 -qarch=450 -qtune=450 -qfixed
-#OPTE = -O4 -qarch=450 -qtune=450 -qdebug=function_trace -qfixed
-#OPTE=${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_MD_Tc_procor-newparm-gnivpar-O4-test.exe
-#LIBS = xdrf/libxdrf.a /home/liwo/UNRES/LIB/libmemmon.a
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -WF,-DAIX -WF,-DISNAN -WF,-DUNRES -WF,-DMP -WF,-DMPI -WF,-DPGI \
- -WF,-DSPLITELE -WF,-DPROCOR -WF,-DAMD64 -WF,-DLANG0
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- ${CC} -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} --print-map ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o; /bin/rm *.pp.*
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} rmdd.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} add.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-compinfo: compinfo.o
- ${CC} ${CFLAGS} compfinfo.c
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-prng_32.o: prng_32.F
- ${FC} -qfixed -O0 prng_32.F
-
-prng.o: prng.f
- ${FC1} ${FFLAGS} prng.f
-
-readrtns_CSA.o: readrtns_CSA.F
- ${FC1} ${FFLAGS} ${CPPFLAGS} readrtns_CSA.F
-
-gen_rand_conf.o: gen_rand_conf.F
- ${FC1} ${FFLAGS} ${CPPFLAGS} gen_rand_conf.F
+++ /dev/null
-#****************************************************************************
-#* TAU Portable Profiling Package **
-#* http://www.cs.uoregon.edu/research/tau **
-#****************************************************************************
-#* Copyright 1997-2002 **
-#* Department of Computer and Information Science, University of Oregon **
-#* Advanced Computing Laboratory, Los Alamos National Laboratory **
-#****************************************************************************
-#######################################################################
-## pC++/Sage++ Copyright (C) 1993,1995 ##
-## Indiana University University of Oregon University of Rennes ##
-#######################################################################
-
-#######################################################################
-# This is a sample Makefile that contains the Profiling and Tracing
-# options. Makefiles of other applications and libraries (not included
-# in this distribution) should include this Makefile.
-# It defines the following variables that should be added to CFLAGS
-# TAU_INCLUDE - Include path for tau headers
-# TAU_DEFS - Defines that are needed for tracing and profiling only.
-# And for linking add to LIBS
-# TAU_LIBS - TAU Tracing and Profiling library libprof.a
-#
-# When the user needs to turn off tracing and profiling and run the
-# application without any runtime overhead of instrumentation, simply
-# remove TAUDEFS and TAULIBS from CFLAGS and LIBS respectively but keep
-# TAUINC.
-#######################################################################
-
-########### Automatically modified by the configure script ############
-CONFIG_ARCH=bgp
-TAU_ARCH=bgp
-CONFIG_CC=bgxlc_r
-CONFIG_CXX=bgxlC_r
-TAU_CC_FE=$(CONFIG_CC)
-TAU_CXX_FE=$(CONFIG_CXX)
-
-# Front end C/C++ Compilers
-#BGL#TAU_CC_FE=xlc #ENDIF#
-#BGL#TAU_CXX_FE=xlC #ENDIF#
-TAU_CC_FE=xlc #ENDIF##BGP#
-TAU_CXX_FE=xlC #ENDIF##BGP#
-#CATAMOUNT#TAU_CC_FE=gcc #ENDIF#
-#CATAMOUNT#TAU_CXX_FE=g++ #ENDIF#
-#SC_GFORTRAN#TAU_CC_FE=gcc #ENDIF#
-#SC_GFORTRAN#TAU_CXX_FE=g++ #ENDIF#
-#SC_PATHSCALE#TAU_CC_FE=gcc #ENDIF#
-#SC_PATHSCALE#TAU_CXX_FE=g++ #ENDIF#
-
-PCXX_OPT=-g
-USER_OPT=
-EXTRADIR=/opt/ibmcmp/xlf/bg/11.1/bin/..
-EXTRADIRCXX=/opt/ibmcmp/vacpp/bg/9.0/bin/..
-TAUROOT=/soft/apps/tau/tau_latest
-TULIPDIR=
-TAUEXTRASHLIBOPTS=
-TAUGCCLIBOPTS=
-TAUGCCLIBDIR=
-TAUGFORTRANLIBDIR=
-PCLDIR=
-PAPIDIR=
-PAPISUBDIR=
-CHARMDIR=
-PDTDIR=/soft/apps/tau/pdtoolkit-3.12
-PDTCOMPDIR=
-DYNINSTDIR=
-JDKDIR=
-SLOG2DIR=
-OPARIDIR=
-TAU_OPARI_TOOL=
-EPILOGDIR=
-EPILOGBINDIR=
-EPILOGINCDIR=
-EPILOGLIBDIR=
-EPILOGEXTRALINKCMD=
-VAMPIRTRACEDIR=
-KTAU_INCDIR=
-KTAU_INCUSERDIR=
-KTAU_LIB=
-KTAU_KALLSYMS_PATH=
-PYTHON_INCDIR=
-PYTHON_LIBDIR=
-PERFINCDIR=
-PERFLIBDIR=
-PERFLIBRARY=
-TAU_SHMEM_INC=
-TAU_SHMEM_LIB=
-TAU_CONFIG=-mpi-pdt
-TAU_MPI_INC=-I/bgsys/drivers/ppcfloor/comm/include
-TAU_MPI_LIB=-L/soft/apps/tau/tau_latest/bgp/lib -lTauMpi$(TAU_CONFIG) -L/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPI_FLIB=-lfmpich.cnk -L/soft/apps/tau/tau_latest/bgp/lib -lTauMpi$(TAU_CONFIG) -L/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPILIB_DIR=/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPI_NOWRAP_LIB= -L/bgsys/drivers/ppcfloor/comm/lib
-TAU_MPI_NOWRAP_FLIB=-lfmpich.cnk -L/bgsys/drivers/ppcfloor/comm/lib
-FULL_CXX=mpixlcxx_r
-FULL_CC=mpixlc_r
-TAU_PREFIX_INSTALL_DIR=/soft/apps/tau/tau_latest
-
-TAU_BIN_DIR=$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/bin
-TAU_INC_DIR=$(TAU_PREFIX_INSTALL_DIR)/include
-TAU_LIB_DIR=$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/lib
-
-#######################################################################
-
-#OPARI#TAU_OPARI_TOOL=$(TAU_BIN_DIR)/opari #ENDIF#
-#ENABLE64BIT#ABI = -64 #ENDIF#
-#ENABLEN32BIT#ABI = -n32 #ENDIF#
-#ENABLE32BIT#ABI = -32 #ENDIF#
-
-#######################################################################
-#SP1#IBM_XLC_ABI = -q32 #ENDIF#
-#SP1#IBM_GNU_ABI = -maix32 #ENDIF#
-#IBM64#IBM_XLC_ABI = -q64 #ENDIF#
-#IBM64#IBM_GNU_ABI = -maix64 #ENDIF#
-#IBM64LINUX#IBM_XLC_ABI = -q64 #ENDIF#
-#IBM64LINUX#IBM_GNU_ABI = -m64 #ENDIF#
-#SUNX86_64#SUN_GNU_ABI = -m64 #ENDIF#
-#SUNX86_64#SUN_CC_ABI = -xarch=amd64 #ENDIF#
-#MIPS32LINUX#SC_GNU_ABI = -mabi=n32 #ENDIF#
-#MIPS32LINUX#SC_PATH_ABI = -n32 #ENDIF#
-#MIPS64LINUX#SC_GNU_ABI = -mabi=64 #ENDIF#
-#MIPS64LINUX#SC_PATH_ABI = -64 #ENDIF#
-#GNU#SC_ABI = $(SC_GNU_ABI) #ENDIF#
-#USE_PATHCC#SC_ABI = $(SC_PATH_ABI) #ENDIF#
-#MIPS32#ABI = $(SC_ABI) #ENDIF#
-#MIPS64#ABI = $(SC_ABI) #ENDIF#
-
-IBM_ABI = $(IBM_XLC_ABI) #ENDIF##USE_IBMXLC#
-#GNU#IBM_ABI = $(IBM_GNU_ABI) #ENDIF#
-#SP1# ABI = $(IBM_ABI) #ENDIF#
-#PPC64# ABI = $(IBM_ABI) #ENDIF#
-#SOLARIS64#SUN_GNU_ABI = -mcpu=v9 -m64 #ENDIF#
-#SOLARIS64#SUN_CC_ABI = -xarch=v9 -xcode=pic32 #ENDIF#
-#SOL2CC#SUN_ABI = $(SUN_CC_ABI) #ENDIF#
-#GNU#SUN_ABI = $(SUN_GNU_ABI) #ENDIF#
-#SOL2#ABI = $(SUN_ABI) #ENDIF#
-#SUNX86_64#ABI = $(SUN_ABI) #ENDIF#
-#FORCEIA32#ABI = -m32#ENDIF#
-#######################################################################
-F90_ABI = $(ABI)
-#IBM64_FORTRAN#F90_ABI = -q64 #ENDIF#
-#######################################################################
-
-############# Standard Defines ##############
-TAU_CC = $(CONFIG_CC) $(ABI) $(ISA)
-TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT)
-TAU_RUN_CC = $(FULL_CC) $(ABI) $(ISA)
-TAU_RUN_CXX = $(FULL_CXX) $(ABI) $(ISA)
-TAU_INSTALL = /bin/cp
-TAU_SHELL = /bin/sh
-LSX = .a
-#############################################
-# JAVA DEFAULT ARCH
-#############################################
-JDKARCH = linux
-#COMPAQ_ALPHA#JDKARCH = alpha #ENDIF#
-#SOL2#JDKARCH = solaris #ENDIF#
-#SGIMP#JDKARCH = irix #ENDIF#
-#SP1#JDKARCH = aix #ENDIF#
-#T3E#JDKARCH = cray #ENDIF#
-#############################################
-# JAVA OBJECTS
-#############################################
-#JAVA#TAU_JAVA_O = TauJava.o TauJAPI.o #ENDIF#
-#JAVA#TAUJAPI = Profile.class #ENDIF#
-
-
-#############################################
-# OpenMP OBJECTS
-#############################################
-#OPENMP#OPENMP_O = OpenMPLayer.o #ENDIF#
-
-#############################################
-# Opari OBJECTS
-#############################################
-#OPARI#OPARI_O = TauOpari.o #ENDIF#
-#KOJAKOPARI#OPARI_O = TauKojakOpari.o #ENDIF#
-#EPILOG#OPARI_O = #ENDIF#
-#VAMPIRTRACE#OPARI_O = #ENDIF#
-#GNU#OPARI_O = #ENDIF#
-
-#############################################
-# CallPath OBJECTS
-#############################################
-#PROFILECALLPATH#CALLPATH_O = TauCallPath.o #ENDIF#
-#PROFILEPARAM#PARAM_O = ProfileParam.o #ENDIF#
-
-#############################################
-# Python Binding OBJECTS
-#############################################
-#PYTHON#PYTHON_O = PyGroups.o PyExceptions.o PyDatabase.o PyBindings.o PyTimer.o PyTau.o #ENDIF#
-
-#############################################
-# DYNINST DEFAULT ARCH
-#############################################
-DYNINST_PLATFORM = $(PLATFORM)
-
-
-#PCL##include $(TAU_INC_DIR)/makefiles/PCLMakefile.stub #ENDIF#
-
-############# OpenMP Fortran Option ########
-#OPENMP#TAU_F90_OPT = -mp #ENDIF#
-#SOL2CC_OPENMP#TAU_F90_OPT = -xopenmp #ENDIF#
-#SUNCC_OPENMP#TAU_F90_OPT = -xopenmp=parallel #ENDIF#
-#COMPAQCXX_OPENMP#TAU_F90_OPT = -omp #ENDIF#
-#IBMXLC_OPENMP#TAU_F90_OPT = -qsmp=omp #ENDIF#
-#GUIDE#TAU_F90_OPT = #ENDIF#
-#PGIOPENMP#TAU_F90_OPT = -mp #ENDIF#
-#INTELOPENMP#TAU_F90_OPT = -openmp #ENDIF#
-#HITACHI_OPENMP#TAU_F90_OPT = #ENDIF#
-
-TAU_R =_r #ENDIF##THREADSAFE_COMPILERS#
-
-############# Fortran Compiler #############
-#GNU_FORTRAN#TAU_F90 = g77 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#GNU_GFORTRAN#TAU_F90 = gfortran $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#G95_FORTRAN#TAU_F90 = g95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SC_GFORTRAN#TAU_F90 = scgfortran $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SGI_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-TAU_F90 = xlf77$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF##IBM_FORTRAN#
-TAU_F90 = mpixlf77$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF##BGP#
-#BGL#TAU_F90 = blrts_xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBM64_FORTRAN#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#IBMXLFAPPLE#TAU_F90 = xlf90$(TAU_R) $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAY_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAY_X1_FORTRAN#TAU_F90 = ftn $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PGI_FORTRAN#TAU_F90 = pgf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#CRAYCNL#TAU_F90 = ftn $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PGI_CATAMOUNT#TAU_F90 = qk-pgf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#ABSOFT_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#LAHEY_FORTRAN#TAU_F90 = lf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#LAHEY64_FORTRAN#TAU_F90 = lf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#NAGWARE_FORTRAN#TAU_F90 = f95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#FUJITSU_FORTRAN#TAU_F90 = F90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#FUJITSU_SOLARIS#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SUN_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#COMPAQ_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#KAI_FORTRAN#TAU_F90 = guidef90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#HP_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#HITACHI_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTEL_FORTRAN#TAU_F90 = efc $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTEL32_FORTRAN#TAU_F90 = ifc $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#INTELIFORT#TAU_F90 = ifort $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#PATHSCALE_FORTRAN#TAU_F90 = pathf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#SC_PATHSCALE#TAU_F90 = scpathf95 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#OPEN64ORC_FORTRAN#TAU_F90 = orf90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-#NEC_FORTRAN#TAU_F90 = f90 $(F90_ABI) $(TAU_F90_OPT) #ENDIF#
-
-
-############# Portable F90 Options #############
-#IBM64_FORTRAN#TAU_F90_FIXED = -qfixed #ENDIF#
-TAU_F90_FIXED = -qfixed #ENDIF##IBM_FORTRAN#
-TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF##IBM_FORTRAN#
-#IBMXLFAPPLE#TAU_F90_FIXED = -qfixed #ENDIF#
-#IBMXLFAPPLE#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-#IBM64_FORTRAN#TAU_F90_SUFFIX = -qsuffix=f=f90 #ENDIF#
-
-############# Profiling Options #############
-PROFILEOPT1 = -DPROFILING_ON #ENDIF##PROFILE#
-#PCL#PROFILEOPT3 = -DTAU_PCL -I$(PCLDIR)/include #ENDIF#
-#PAPI#PROFILEOPT3 = -DTAU_PAPI -I$(PAPIDIR)/src -I$(PAPIDIR)/include #ENDIF#
-#PCL#PCL_O = PclLayer.o #ENDIF#
-#PAPI#PAPI_O = PapiLayer.o #ENDIF#
-#MULTIPLECOUNTERS#MULT_O = MultipleCounters.o #ENDIF#
-#PROFILECALLS#PROFILEOPT4 = -DPROFILE_CALLS #ENDIF#
-#PROFILESTATS#PROFILEOPT5 = -DPROFILE_STATS #ENDIF#
-#DEBUGPROF#PROFILEOPT6 = -DDEBUG_PROF #ENDIF#
-PROFILEOPT7 = -DTAU_STDCXXLIB #ENDIF##STDCXXLIB#
-#CRAYX1CC#PROFILEOPT7 = #ENDIF#
-#CRAYCC#PROFILEOPT7 = #ENDIF#
-#INTELTFLOP#PROFILEOPT8 = -DPOOMA_TFLOP #ENDIF#
-#NORTTI#PROFILEOPT9 = -DNO_RTTI #ENDIF#
-#RTTI#PROFILEOPT9 = -DRTTI #ENDIF#
-#GNU#PROFILEOPT10 = -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#APPLECXX#PROFILEOPT10 = -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#SOL2CC#PROFILEOPT10 = -DTAU_SOL2CC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SUNCC#PROFILEOPT10 = -DTAU_SOL2CC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_PATHCC#PROFILEOPT10 = -DTAU_DOT_H_LESS_HEADERS -fPIC -DTAU_PATHSCALE #ENDIF#
-#OPEN64ORC#PROFILEOPT10 = -DTAU_DOT_H_LESS_HEADERS -DTAU_OPEN64ORC -fpic #ENDIF#
-#CALLSTACK#PROFILEOPT11 = -DPROFILE_CALLSTACK #ENDIF#
-#PGI1.7#PROFILEOPT12 = -DPGI #ENDIF#
-#CRAYKAI#PROFILEOPT12 = -DCRAYKAI #ENDIF#
-#HP_FORTRAN#PROFILEOPT12 = -DHP_FORTRAN #ENDIF#
-#CRAYCC#PROFILEOPT13 = -h instantiate=used -DCRAYCC -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#CRAYX1CC#PROFILEOPT13 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SGICC#TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT) -LANG:std #ENDIF#
-#INTELCXXLIBICC#TAU_CXX = $(CONFIG_CXX) $(ABI) $(ISA) $(USER_OPT) -cxxlib-icc #ENDIF#
-#PTHREAD_AVAILABLE#PROFILEOPT15 = -DPTHREADS #ENDIF#
-#COMPAQCXX_PTHREAD#PROFILEOPT15 = -DPTHREADS -pthread #ENDIF#
-#TAU_SPROC#PROFILEOPT15 = -DTAU_SPROC #ENDIF#
-#TAU_PAPI_THREADS#PROFILEOPT15 = -DTAU_PAPI_THREADS #ENDIF#
-#TULIPTHREADS#PROFILEOPT16 = -DTULIPTHREADS #ENDIF#
-#TRACE#TRACEOPT = -DTRACING_ON #ENDIF#
-#TRACE#EVENTS_O = Tracer.o #ENDIF#
-#KTAU#KTAU_O = TauKtau.o KtauProfiler.o KtauSymbols.o #ENDIF#
-#KTAU_MERGE#KTAU_MERGE_O = KtauFuncInfo.o KtauMergeInfo.o ktau_syscall.o #ENDIF#
-#KTAU_SHCTR#KTAU_SHCTR_O = KtauCounters.o #ENDIF#
-#MPITRACE#TRACEOPT = -DTAU_MPITRACE -DTRACING_ON #ENDIF#
-#MPITRACE#EVENTS_O = Tracer.o #ENDIF#
-#MUSE#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#MUSE_EVENT#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#MUSE_MULTIPLE#MUSE_O = TauMuse.o TauMuseFilters.o TauMuseHandlers.o TauMusePackages.o #ENDIF#
-#COMPENSATE#COMPENSATE_O = TauCompensate.o #ENDIF#
-#PTHREAD_AVAILABLE#THR_O = PthreadLayer.o #ENDIF#
-#TAU_PAPI_THREADS#THR_O = PapiThreadLayer.o #ENDIF#
-#TAU_SPROC#THR_O = SprocLayer.o #ENDIF#
-#JAVA#THR_O = JavaThreadLayer.o #ENDIF#
-#TULIPTHREADS#THR_O = TulipThreadLayer.o #ENDIF#
-#LINUXTIMERS#PLATFORM_O = TauLinuxTimers.o #ENDIF#
-#TULIPTHREADS#PROFILEOPT17 = -I$(TULIPDIR)/include -I$(TULIPDIR)/Tuliplib #ENDIF#
-#SMARTS#PROFILEOPT17 = -I$(TULIPDIR)/include -I$(TULIPDIR)/lib -I$(TULIPDIR)/machine-specific/$(HOSTTYPE) #ENDIF#
-#SMARTS#PROFILEOPT18 = -DSMARTS #ENDIF#
-#KAI#PROFILEOPT19 = -DKAI -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_DECCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#SGICC#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#USE_INTELCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#USE_NECCXX#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#PGI#PROFILEOPT19 = -DTAU_DOT_H_LESS_HEADERS -fPIC #ENDIF#
-#ACC#PROFILEOPT19 = -AA +z -DTAU_DOT_H_LESS_HEADERS -DTAU_HPUX #ENDIF#
-#FUJITSU#PROFILEOPT19 = -DFUJITSU -DTAU_DOT_H_LESS_HEADERS #ENDIF#
-#KAINOEX#PROFILEOPT20 = --no_exceptions #ENDIF#
-#SGICCNOEX#PROFILEOPT20 = -LANG:exceptions=off #ENDIF#
-#HPGNU#PROFILEOPT21 = -fPIC #ENDIF#
-#HITACHI#PROFILEOPT21 = -DTAU_HITACHI #ENDIF#
-#SP1#PROFILEOPT21 = -D_POSIX_SOURCE -DTAU_AIX #ENDIF#
-#PPC64#TAU_PIC_PROFILEOPT21 = -qpic=large #ENDIF#
-#BGL#TAU_PIC_PROFILEOPT21 = #ENDIF#
-PROFILEOPT21 = -DTAU_DOT_H_LESS_HEADERS -DTAU_XLC $(TAU_PIC_PROFILEOPT21) #ENDIF##USE_IBMXLC#
-#IBMXLCAPPLE#PROFILEOPT21 = -DTAU_DOT_H_LESS_HEADERS -DTAU_XLC -DTAU_APPLE_XLC #ENDIF#
-#PCLPTHREAD#PROFILEOPT22 = -DPCL_MUTEX_LOCK #ENDIF#
-#JAVA#PROFILEOPT23 = -DJAVA #ENDIF#
-#MONITOR#PROFILEOPT24 = -DMONITORING_ON #ENDIF#
-#JAVA#PROFILEOPT25 = -I$(JDKDIR)/include -I$(JDKDIR)/include/$(JDKARCH) #ENDIF#
-PROFILEOPT26 = -DTAU_MPI #ENDIF##MPI#
-PROFILEOPT26 = -DTAU_MPI -DTAU_MPI_THREADED #ENDIF##MPI_THREADED#
-#OPENMP#PROFILEOPT27 = -mp -DTAU_OPENMP#ENDIF#
-#GNU#PROFILEOPT27 = #ENDIF#
-#SOL2CC_OPENMP#PROFILEOPT27 = -xopenmp -DTAU_OPENMP#ENDIF#
-#SUNCC_OPENMP#PROFILEOPT27 = -xopenmp=parallel -DTAU_OPENMP#ENDIF#
-#SUNCC_OPENMP#PROFILEOPT27 = -xopenmp=parallel -DTAU_OPENMP#ENDIF#
-#HITACHI_OPENMP#PROFILEOPT27 = -DTAU_OPENMP#ENDIF#
-#COMPAQCXX_OPENMP#PROFILEOPT27 = -omp -DTAU_OPENMP#ENDIF#
-#IBMXLC_OPENMP#PROFILEOPT27 = -qsmp=omp -DTAU_OPENMP #ENDIF#
-#OPEN64_OPENMP#PROFILEOPT27 = -mp -DTAU_OPENMP #ENDIF#
-#GUIDE#PROFILEOPT27 = -DTAU_OPENMP #ENDIF#
-#PGIOPENMP#PROFILEOPT27 = -mp -D_OPENMP -DTAU_OPENMP -U_RWSTD_MULTI_THREAD -U_REENTRANT #ENDIF#
-#INTELOPENMP#PROFILEOPT27 = -openmp -DTAU_OPENMP #ENDIF#
-#GNUOPENMP#PROFILEOPT27 = -fopenmp -DTAU_OPENMP #ENDIF#
-#OPARI#PROFILEOPT28 = -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#OPARI_REGION#PROFILEOPT28 = -DTAU_OPARI_REGION -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#OPARI_CONSTRUCT#PROFILEOPT28 = -DTAU_OPARI_CONSTRUCT -I$(OPARIDIR)/lib -I$(OPARIDIR)/include #ENDIF#
-#MULTIPLECOUNTERS#PROFILEOPT29 = -DTAU_MULTIPLE_COUNTERS #ENDIF#
-#SGITIMERS#PROFILEOPT30 = -DSGI_TIMERS #ENDIF#
-#BGLTIMERS#PROFILEOPT30 = -DBGL_TIMERS -I/bgl/BlueLight/ppcfloor/bglsys/include #ENDIF#
-#BGPTIMERS#PROFILEOPT30 = -DBGP_TIMERS -I/bgsys/drivers/ppcfloor/arch/include/common -I/bgsys/drivers/ppcfloor/arch/include -I/bgsys/drivers/ppcfloor/arch/include/spi #ENDIF#
-#CRAYTIMERS#PROFILEOPT30 = -DCRAY_TIMERS #ENDIF#
-#LINUXTIMERS#PROFILEOPT31 = -DTAU_LINUX_TIMERS #ENDIF#
-#ALPHATIMERS#PROFILEOPT31 = -DTAU_ALPHA_TIMERS #ENDIF#
-#CPUTIME#PROFILEOPT32 = -DCPU_TIME #ENDIF#
-#PAPIWALLCLOCK#PROFILEOPT33 = -DTAU_PAPI_WALLCLOCKTIME #ENDIF#
-#PAPIVIRTUAL#PROFILEOPT34 = -DTAU_PAPI_VIRTUAL #ENDIF#
-#SGICOUNTERS#PROFILEOPT35 = -DSGI_HW_COUNTERS #ENDIF#
-#EPILOG#PROFILEOPT36 = -DTAU_EPILOG -I$(EPILOGINCDIR) #ENDIF#
-#SCALASCA#PROFILEOPT36 = -DTAU_SCALASCA -DTAU_EPILOG -I$(EPILOGINCDIR) #ENDIF#
-#VAMPIRTRACEINTS#TAU_VAMPIRTRACEOPTS = -DTAU_64BITTYPES_NEEDED -DHAVE_INTTYPES_H #ENDIF#
-#VAMPIRTRACE#PROFILEOPT36 = -DTAU_VAMPIRTRACE -I$(VAMPIRTRACEDIR)/vtlib -I$(VAMPIRTRACEDIR)/include $(TAU_VAMPIRTRACEOPTS)#ENDIF#
-#PROFILECALLPATH#PROFILEOPT36 = -DTAU_CALLPATH #ENDIF#
-#PROFILEPHASE#PROFILEOPT36 = -DTAU_CALLPATH -DTAU_PROFILEPHASE#ENDIF#
-#PYTHON#PROFILEOPT37 = -I$(PYTHON_INCDIR) #ENDIF#
-#NOCOMM#PROFILEOPT38 = -DTAU_NOCOMM #ENDIF#
-#MUSE#PROFILEOPT39 = -DTAU_MUSE #ENDIF#
-#SETNODE0#PROFILEOPT40 = -DTAU_SETNODE0 #ENDIF#
-#COMPENSATE#PROFILEOPT41 = -DTAU_COMPENSATE #ENDIF#
-#MUSE_EVENT#PROFILEOPT42 = -DTAU_MUSE_EVENT #ENDIF#
-#MUSE_MULTIPLE#PROFILEOPT43 = -DTAU_MUSE_MULTIPLE #ENDIF#
-#DYNINST41##PROFILEOPT44 = -DTAU_DYNINST41BUGFIX #ENDIF#
-# DyninstAPI v4.2.1 fixes the bug, so we don't need OPT44 anymore
-#PROFILEMEMORY#PROFILEOPT45 = -DTAU_PROFILEMEMORY #ENDIF#
-PROFILEOPT46 = -DTAU_MPIGREQUEST #ENDIF##MPIGREQUEST#
-#MPIOREQUEST#PROFILEOPT47 = -DTAU_MPIOREQUEST #ENDIF#
-PROFILEOPT48 = -DTAU_MPIDATAREP #ENDIF##MPIDATAREP#
-PROFILEOPT49 = -DTAU_MPIERRHANDLER #ENDIF##MPIERRHANDLER#
-#CATAMOUNT#PROFILEOPT50 = -DTAU_CATAMOUNT #ENDIF#
-#MPICONSTCHAR#PROFILEOPT51 = -DTAU_MPICONSTCHAR #ENDIF#
-PROFILEOPT52 = -DTAU_MPIATTRFUNCTION #ENDIF##MPIATTR#
-PROFILEOPT53 = -DTAU_MPITYPEEX #ENDIF##MPITYPEEX#
-PROFILEOPT54 = -DTAU_MPIADDERROR #ENDIF##MPIADDERROR#
-#MPINEEDSTATUSCONV#PROFILEOPT55 = -DTAU_MPI_NEEDS_STATUS #ENDIF#
-
-#DEPTHLIMIT#PROFILEOPT56 = -DTAU_DEPTH_LIMIT #ENDIF#
-#TAU_CHARM#PROFILEOPT57 = -DTAU_CHARM -I$(CHARMDIR)/include #ENDIF#
-#PROFILEHEADROOM#PROFILEOPT58 = -DTAU_PROFILEHEADROOM #ENDIF#
-#JAVACPUTIME#PROFILEOPT59 = -DJAVA_CPU_TIME #ENDIF#
-PROFILEOPT60 = -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE #ENDIF##TAU_LARGEFILE#
-PROFILEOPT60 = -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -D__xlc__ #ENDIF##BGP#
-# Omit the -D_LARGETFILE64_SOURCE till we can check the IBM crash
-#SHMEM#PROFILEOPT61 = -DTAU_SHMEM #ENDIF#
-#KTAU#PROFILEOPT62 = -DTAUKTAU -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -I$(KTAU_INCUSERDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#KTAU_MERGE#PROFILEOPT63 = -DTAUKTAU_MERGE -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#FREEBSD#PROFILEOPT64 = -DTAU_FREEBSD #ENDIF#
-#PROFILEPARAM#PROFILEOPT65 = -DTAU_PROFILEPARAM #ENDIF#
-#IBMMPI#PROFILEOPT66 = -DTAU_IBM_MPI #ENDIF#
-#WEAKMPIINIT#PROFILEOPT67 = -DTAU_WEAK_MPI_INIT #ENDIF#
-#LAMPI#PROFILEOPT68 = -DTAU_LAMPI #ENDIF#
-#MPICH_IGNORE_CXX_SEEK#PROFILEOPT68 = -DMPICH_IGNORE_CXX_SEEK #ENDIF#
-PROFILEOPT68 = -DMPICH_IGNORE_CXX_SEEK #ENDIF##BGP#
-#MPICH2_MPI_INPLACE#PROFILEOPT73 = -DTAU_MPICH2_MPI_IN_PLACE #ENDIF#
-
-
-############# RENCI Scalable Trace Lib Options #############
-STFF_DIR=
-SDDF_DIR=
-#RENCI_STFF#PROFILEOPT69 = -DRENCI_STFF -I$(STFF_DIR)/include #ENDIF#
-#RENCI_STFF#TAU_LINKER_OPT11 = -L$(STFF_DIR)/lib -lstff -L$(SDDF_DIR)/lib -lPablo $(TAU_MPI_LIB) #ENDIF#
-#RENCI_STFF#RENCI_STFF_O = RenciSTFF.o #ENDIF#
-
-############# KTAU (again) #############
-#KTAU_SHCTR#PROFILEOPT70 = -DTAUKTAU_SHCTR -DKTAU_USER_SRC_COMPILE -I$(KTAU_INCDIR) -DKTAU_INCUSERDIR=\"$(KTAU_INCUSERDIR)\" -DKTAU_KALLSYMS_PATH=\"$(KTAU_KALLSYMS_PATH)\" #ENDIF#
-#KTAU#TAU_LINKER_OPT12 = -L$(KTAU_LIB) -lktau #ENDIF#
-
-#MIPS32LINUX#PROFILEOPT71 = -D_ABIN32=2 -D_MIPS_SIM=_ABIN32 #ENDIF#
-
-#BGL#PROFILEOPT72 = -DTAU_BGL -I/bgl/BlueLight/ppcfloor/bglsys/include #ENDIF#
-PROFILEOPT72 = -DTAU_BGP -I/bgsys/drivers/ppcfloor/arch/include/common -I/bgsys/drivers/ppcfloor/arch/include -I/bgsys/drivers/ppcfloor/arch/include/spi #ENDIF##BGP#
-
-#For F90 support for all platforms
-FWRAPPER = TauFMpi.o
-MPI2EXTENSIONS = TauMpiExtensions.o #ENDIF##MPI2#
-MPI2EXTENSIONS = #ENDIF##BGP#
-#CRAYX1CC#MPI2EXTENSIONS = #ENDIF#
-
-#SGICOUNTERS#LEXTRA = -lperfex #ENDIF#
-#ALPHATIMERS#LEXTRA = -lrt #ENDIF#
-#SOL2#PCL_EXTRA_LIBS = -lcpc #ENDIF#
-#PCL#LEXTRA = -L$(PCLDIR)/lib -lpcl $(PCL_EXTRA_LIBS) #ENDIF#
-#PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#IA64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi #ENDIF#
-#Due to some problems with older versions of libpfm, we are using the static lib
-#IA64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#PAPIPFM##LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpfm -lpapi -lpfm #ENDIF#
-#X86_64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR)/ -L$(PAPIDIR)/lib64/ -lpapi -lperfctr #ENDIF#
-#SOL2PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -lcpc #ENDIF#
-#IBMPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/usr/lpp/pmtoolkit/lib -L/usr/pmapi/lib -lpmapi#ENDIF#
-#PPC64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#BGLPAPI_RTS#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.rts.a -L/bgl/BlueLight/ppcfloor/bglsys/lib -lbgl_perfctr.rts -lrts.rts -ldevices.rts #ENDIF#
-#BGLPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/bgl/BlueLight/ppcfloor/bglsys/lib -lbgl_perfctr.rts -lrts.rts -ldevices.rts #ENDIF#
-#BGPPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a -L/bgsys/drivers/ppcfloor/runtime/SPI -lSPI.cna #ENDIF#
-#IBM64PAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi64.a -L/usr/lpp/pmtoolkit/lib -L/usr/pmapi/lib -lpmapi #ENDIF#
-#IBM64PAPILINUX#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a #ENDIF#
-#SGI64PAPI#LEXTRA = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi64 #ENDIF#
-#ALPHAPAPI#LEXTRA = $(PAPIDIR)/$(PAPISUBDIR)/libpapi.a /usr/lib/dcpi/dadd.a -lclu -lrt #ENDIF#
-
-TAU_PAPI_EXTRA_FLAGS = $(LEXTRA)
-#IA64PAPI#TAU_PAPI_EXTRA_FLAGS = -L$(PAPIDIR)/$(PAPISUBDIR) -lpapi #ENDIF#
-
-
-# By default make TAU_PAPI_RPATH null. Support it on a compiler by compiler basis.
-#PAPI###TAU_PAPI_RPATH = -rpath $(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#PAPI##TAU_PAPI_RPATH = #ENDIF#
-#PPC64PAPI#TAU_PAPI_RPATH = #ENDIF#
-#BGLPAPI#TAU_PAPI_RPATH = #ENDIF#
-#BGPPAPI#TAU_PAPI_RPATH = #ENDIF#
-#USE_INTELCXX#TAU_PAPI_RPATH = #ENDIF#
-#CRAYX1CC#TAU_PAPI_RPATH = #ENDIF#
-#PGI#TAU_PAPI_RPATH = -R$(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#GNU#TAU_PAPI_RPATH = -Wl,-rpath $(PAPIDIR)/$(PAPISUBDIR) #ENDIF#
-#USE_PATHCC#TAU_PAPI_RPATH = #ENDIF#
-
-# if the user has specified -cc=gcc -c++=g++ -fortran=intel, we shouldn't use -rpath
-# because they are likely going to link with ifort
-#INTEL32_FORTRAN#TAU_PAPI_RPATH = #ENDIF#
-#SOL2PAPI#TAU_PAPI_RPATH = #ENDIF#
-#IBMPAPI#TAU_PAPI_RPATH = #ENDIF#
-#IBM64PAPI#TAU_PAPI_RPATH = #ENDIF#
-#PAPI#TAU_LINKER_OPT1 = $(TAU_PAPI_RPATH) #ENDIF#
-
-#PTHREAD_AVAILABLE#LEXTRA1 = -lpthread #ENDIF#
-#TULIPTHREADS#LEXTRA1 = -L$(TULIPDIR)/Tuliplib -ltulip #ENDIF#
-#SMARTS##include $(TAU_INC_DIR)/makefiles/GNUmakefile-$(HOSTTYPE) #ENDIF#
-#SMARTS#LEXTRA1 = $(LSMARTS) #ENDIF#
-
-TAU_GCCLIB = -lgcc_s
-TAU_GCCLIB = #ENDIF##BGP#
-#INTEL32_ON_64#TAU_GCCLIB = -lgcc #ENDIF#
-#FREEBSD#TAU_GCCLIB = -lgcc #ENDIF#
-#BGL#TAU_GCCLIB = -lgcc #ENDIF#
-#GNU#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#OPEN64ORC_FORTRAN#TAU_FORTRANLIBS = -lfortran -lffio #ENDIF#
-#PATHSCALE_FORTRAN#TAU_FORTRANLIBS = -lpathfstart -lpathfortran #ENDIF#
-#SC_PATHSCALE#TAU_FORTRANLIBS = -lpathfstart -lpathfortran #ENDIF#
-#NAGWARE_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/quickfit.o -L$(EXTRADIR)/lib -lf96 #ENDIF#
-#G95_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR) -lf95 #ENDIF#
-#GNU_FORTRAN#TAU_FORTRANLIBS = -lg2c #ENDIF#
-#GNU_GFORTRAN#TAU_FORTRANLIBS = -L$(TAUGFORTRANLIBDIR) -lgfortran -lgfortranbegin #ENDIF#
-#SC_GFORTRAN#TAU_FORTRANLIBS = -lgfortran -lgfortranbegin #ENDIF#
-#SGI_FORTRAN#TAU_FORTRANLIBS = -lfortran -lftn #ENDIF#
-TAU_IBM_FORTRANLIBS = -bh:4 -bpT:0x10000000 -bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM_FORTRANLIBS = -Wl,-bh:4 -Wl,-bpT:0x10000000 -Wl,-bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-#KAI#TAU_IBM_FORTRANLIBS = --backend -bh:4 --backend -bpT:0x10000000 --backend -bpD:0x20000000 /lib/crt0.o -lxlf90 -lm -lc #ENDIF#
-TAU_FORTRANLIBS = $(TAU_IBM_FORTRANLIBS) #ENDIF##IBM_FORTRAN#
-
-TAU_IBM64_FORTRANLIBS = -bh:4 -bpT:0x10000000 -bpD:0x20000000 -b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM64_FORTRANLIBS = -Wl,-bh:4 -Wl,-bpT:0x10000000 -Wl,-bpD:0x20000000 -Wl,-b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#KAI#TAU_IBM64_FORTRANLIBS = --backend -bh:4 --backend -bpT:0x10000000 --backend -bpD:0x20000000 --backend -b64 /lib/crt0_64.o -lxlf90 -lm -lc #ENDIF#
-#IBM64_FORTRAN#TAU_FORTRANLIBS = $(TAU_IBM64_FORTRANLIBS) #ENDIF#
-#IBM64_FORTRAN#TAU_FORLIBDIR=lib64 #ENDIF#
-TAU_FORLIBDIR=lib #ENDIF##IBM_FORTRAN#
-#BGL#TAU_FORLIBDIR=blrts_dev_lib #ENDIF#
-TAU_FORLIBDIR=bglib #ENDIF##BGP#
-#PPC64#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -lxlf90 -lxlfmath -lxl #ENDIF#
-#BGL#TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -L$(EXTRADIR)/blrts_lib -lxlf90 -lxlfmath -lxl #ENDIF#
-
-TAU_BGL_OMP_SERIAL= -lxlomp_ser #ENDIF##BGP#
-#OPENMP#TAU_BGL_OMP_SERIAL= #ENDIF#
-TAU_OMP_SERIAL=$(TAU_BGL_OMP_SERIAL) #ENDIF##BGP#
-TAU_FORTRANLIBS = -L$(EXTRADIR)/$(TAU_FORLIBDIR) -lxlf90 -lxlfmath $(TAU_OMP_SERIAL) #ENDIF##BGP#
-
-#IBMXLFAPPLE#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib -lxlf90 -lxlfmath -lxl #ENDIF#
-
-#CRAY_FORTRAN#TAU_FORTRANLIBS = #ENDIF#
-#CRAY_X1_FORTRAN#TAU_FORTRANLIBS = #ENDIF#
-#PGI_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/f90main.o -lpgf90 -lpgf90rtl -lpgf90_rpm1 -lpgf902 -lpgftnrtl -lrt #ENDIF#
-#HP_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib/pa2.0 -lF90 -lcl #ENDIF#
-#INTEL_FORTRAN#TAU_FORTRANLIBS = -lcprts -lPEPCF90 #ENDIF#
-#INTEL32_FORTRAN#TAU_FORTRANLIBS = -lcprts -lCEPCF90 -lF90 #ENDIF#
-#INTELIFORT#TAU_FORTRANLIBS = -lcprts #ENDIF#
-#INTEL81FIX#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -lcxa -lunwind -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#INTEL10FIX#TAU_FORTRANLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#INTELCXXLIBICC#TAU_FORTRANLIBS = -lcprts -L$(EXTRADIR)/lib -lifcore $(EXTRADIR)/lib/for_main.o #ENDIF#
-#PGI1.7#LEXTRA = -lstd -lstrm#ENDIF#
-#PGI1.7#TAUHELPER = $(TAUROOT)/src/Profile/TauPGIHelper.cpp #ENDIF#
-# LINKER OPTIONS
-TAU_LINKER_OPT2 = $(LEXTRA)
-
-
-#ACC#TAUHELPER = -AA #ENDIF#
-#FUJITSU_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj9i6 -lfj9f6 -lfj9e6 #ENDIF#
-#FUJITSU_SOLARIS#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj90l -lfj90f #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS = -lfui -lfsumai -lfprodai -lfminlai -lfmaxlai -lfminvai -lfmaxvai -lfsu -lsunmath #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS_SUN_OPTERON = -lfsu -lsunmath #ENDIF#
-#SUN_FORTRAN#TAU_FORTRANLIBS_SUNCC = -lfsu #ENDIF#
-#SUN386I#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUN_OPTERON) #ENDIF#
-#SUNX86_64#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUN_OPTERON) #ENDIF#
-#SUNCC#TAU_FORTRANLIBS = $(TAU_FORTRANLIBS_SUNCC) #ENDIF#
-#SOL2#EXTRALIBS = -lsocket -lnsl #ENDIF#
-#SUN386I#EXTRALIBS = -lsocket -lnsl -lrt #ENDIF#
-#SUNX86_64#EXTRALIBS = -lsocket -lnsl -lrt #ENDIF#
-#COMPAQ_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/cmplrs/fort90/for_main.o -L$(EXTRADIR)/lib -L$(EXTRADIR)/lib/cmplrs/fort90 -L$(EXTRADIR)/lib/cmplrs/fort90 -lUfor -lfor -lFutil -lm -lmld -lexc -lc #ENDIF#
-#ABSOFT_FORTRAN#TAU_FORTRANLIBS = -L$(EXTRADIR)/lib -lfio -lf90math -lU77 -lf77math -lfio #ENDIF#
-#LAHEY_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib/fj90rt0.o -L$(EXTRADIR)/lib -lfj9i6 -lfj9f6 -lfj9e6 -lfccx86_6a #ENDIF#
-#LAHEY64_FORTRAN#TAU_FORTRANLIBS = $(EXTRADIR)/lib64/fj90rt0.o -L$(EXTRADIR)/lib64 -lfj90f -lfj90i -lelf #ENDIF#
-#HITACHI_FORTRAN#TAU_FORTRANLIBS = -lf90 -lhf90math #ENDIF#
-#NEC_FORTRAN#TAU_FORTRANLIBS = -f90lib #ENDIF#
-#COMPAQ_GUIDEF90#TAU_FORTRANLIBS = $(EXTRADIR)/lib/cmplrs/fort90/for_main.o -lfor #ENDIF#
-
-
-#HITACHI#TAU_HITACHI_EXTRA = -L/usr/local/lib -llrz32 #ENDIF#
-
-## To use the standard F90 linker instead of TAU_LINKER + TAU_FORTRANLIBS, add
-#GNU#TAU_CXXLIBS = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#GNU#TAU_GNUCXXLIBS = -L$(TAUGCCLIBDIR) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#OPEN64ORC#TAU_CXXLIBS = -lstdc++ #ENDIF#
-#PATHSCALE_FORTRAN#TAU_CXXLIBS = -lstdc++ #ENDIF#
-#LAHEY_FORTRAN#TAU_CXXLIBS = $(TAU_GNUCXXLIBS) /usr/lib/libc.a #ENDIF#
-#NAGWARE_FORTRAN#TAU_CXXLIBS = $(TAU_GNUCXXLIBS) /usr/lib/libc.a #ENDIF#
-#PGI#TAU_CXXLIBS = -lstd -lC #ENDIF#
-#CRAYCNL#TAU_CXXLIBS = -L$(EXTRADIR)/lib -lstd -lC -lpgc #ENDIF#
-#CRAYX1CC#TAU_CXXLIBS = -L/opt/ctl/CC/CC/lib -lC #ENDIF#
-
-TAU_SGI_INIT = /usr/lib32/c++init.o
-#ENABLE64BIT#TAU_SGI_INIT = /usr/lib64/c++init.o #ENDIF#
-#ENABLEN32BIT#TAU_SGI_INIT = /usr/lib32/c++init.o #ENDIF#
-#ENABLE32BIT#TAU_SGI_INIT = /usr/lib/c++init.o #ENDIF#
-
-#SGICC#TAU_CXXLIBS = $(TAU_SGI_INIT) -lC #ENDIF#
-#APPLECXX#TAU_CXXLIBS = -lstd -lC #ENDIF#
-#SOL2#TAU_CXXLIBS = -lCstd -lCrun #ENDIF#
-#SOL2CC#TAU_CXXLIBS_SUN_OPTERON = -lCstd -lCrun -lm #ENDIF#
-#SUNCC#TAU_CXXLIBS_SUNCC = -lCstd -lCrun #ENDIF#
-#SUN386I#TAU_CXXLIBS = $(TAU_CXXLIBS_SUN_OPTERON) #ENDIF#
-#SUNCC#TAU_CXXLIBS = $(TAU_CXXLIBS_SUNCC) #ENDIF#
-#SUNX86_64#TAU_CXXLIBS = $(TAU_CXXLIBS_SUN_OPTERON) #ENDIF#
-#FUJITSU_SOLARIS#TAU_CXXLIBS = -lstd -lstdm #ENDIF#
-#PPC64#TAU_XLCLIBS = -L$(EXTRADIRCXX)/$(TAU_FORLIBDIR) -libmc++ -lstdc++ #ENDIF#
-#IBMXLCAPPLE#TAU_FORLIBDIR =lib #ENDIF#
-#IBMXLCAPPLE#TAU_XLCLIBS = -L$(EXTRADIRCXX)/$(TAU_FORLIBDIR) -libmc++ -lstdc++ #ENDIF#
-#BGL#TAU_XLCLIBS = -L$(EXTRADIRCXX)/blrts_dev_lib -L$(EXTRADIRCXX)/blrts_lib -libmc++ -L/bgl/BlueLight/ppcfloor/blrts-gnu/powerpc-bgl-blrts-gnu/lib -lstdc++ #ENDIF#
-TAU_XLCLIBS = -L$(EXTRADIRCXX)/bglib -libmc++ -lstdc++ #ENDIF##BGP#
-#SP1#TAU_XLCLIBS = -lC #ENDIF#
-TAU_CXXLIBS = $(TAU_XLCLIBS) #ENDIF##USE_IBMXLC#
-#USE_DECCXX#TAU_CXXLIBS = -lcxxstd -lcxx #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS_INTEL = -lcprts -lPEPCF90 #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#INTELIFORT#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#INTEL81FIX#TAU_CXXLIBS_INTEL = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) -lcxa -lunwind#ENDIF#
-#INTEL10FIX#TAU_CXXLIBS_INTEL = -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lstdc++ $(TAU_GCCLIB) #ENDIF#
-#INTELCXXLIBICC#TAU_CXXLIBS_INTEL = -lcprts #ENDIF#
-#USE_INTELCXX#TAU_CXXLIBS = $(TAU_CXXLIBS_INTEL) #ENDIF#
-#APPLECXX#TAU_CXXLIBS = -lstdc++ -L$(TAUGCCLIBDIR) $(TAUGCCLIBOPTS) -lgcc_s.1 -lSystemStubs #ENDIF#
-
-# EXTERNAL PACKAGES: VAMPIRTRACE
-#VAMPIRTRACE#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEMPI#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.mpi -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEOMPI#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.ompi -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-#VAMPIRTRACEOMP#TAU_LINKER_OPT3 = -L$(VAMPIRTRACEDIR)/lib -L$(VAMPIRTRACEDIR)/vtlib -lvt.omp -lotf -lz $(TAU_HITACHI_EXTRA) #ENDIF#
-
-# EXTERNAL PACKAGES: EPILOG
-#SCALASCA#TAU_ELG_SERIAL_SUFFIX =.ser #ENDIF#
-#EPILOG#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg$(TAU_ELG_SERIAL_SUFFIX) $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGMPI#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.mpi $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGOMPI#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.ompi $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-#EPILOGOMP#TAU_LINKER_OPT3 = -L$(EPILOGLIBDIR) -lelg.omp $(EPILOGEXTRALINKCMD) $(TAU_HITACHI_EXTRA) #ENDIF#
-
-# When using shared, we don't want -lelg.mpi or -lvt.mpi showing up
-#FORCESHARED#TAU_LINKER_OPT3=#ENDIF#
-
-TAU_LINKER_OPT4 = $(LEXTRA1)
-#HITACHI_OPENMP#TAU_LINKER_OPT4 = -lcompas -lpthreads -lc_r #ENDIF#
-#OPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#SOL2CC_OPENMP#TAU_LINKER_OPT5 = -xopenmp #ENDIF#
-#SUNCC_OPENMP#TAU_LINKER_OPT5 = -xopenmp=parallel #ENDIF#
-#GNU#TAU_LINKER_OPT5 = #ENDIF#
-#COMPAQCXX_OPENMP#TAU_LINKER_OPT5 = -omp #ENDIF#
-#IBMXLC_OPENMP#TAU_LINKER_OPT5 = -qsmp=omp #ENDIF#
-#OPEN64_OPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#GUIDE#TAU_LINKER_OPT5 = #ENDIF#
-#PGIOPENMP#TAU_LINKER_OPT5 = -mp #ENDIF#
-#INTELOPENMP#TAU_LINKER_OPT5 = -openmp #ENDIF#
-
-# MALLINFO needs -lmalloc on sgi, sun
-#SGIMP#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-#SOL2#TAU_LINKER_OPT6 = #ENDIF#
-#SUN386I#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-#SUNX86_64#TAU_LINKER_OPT6 = -lmalloc #ENDIF#
-
-# We need -lCio with SGI CC 7.4+
-#SGICC#TAU_LINKER_OPT7 = -lCio #ENDIF#
-
-# charm
-#TAU_CHARM#TAU_LINKER_OPT8 = -lconv-core #ENDIF#
-
-# extra libs
-#SUN386I#TAU_LINKER_OPT9 = $(EXTRALIBS) #ENDIF#
-#SUNX86_64#TAU_LINKER_OPT9 = $(EXTRALIBS) #ENDIF#
-#SOL2#TAU_LINKER_OPT9 = $(ExTRALIBS) #ENDIF#
-
-#BGL#TAU_LINKER_OPT10 = -L/bgl/BlueLight/ppcfloor/bglsys/lib -lrts.rts #ENDIF#
-
-TAU_IBM_PYTHON_SHFLAG = -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp -Wl,-einitpytau#ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM_PYTHON_SHFLAG = -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp -Wl,-einitpytau#ENDIF#
-#KAI#TAU_IBM_PYTHON_SHFLAG = --backend -Wl,-bI:$(PYTHON_LIBDIR)/config/python.exp --backend -Wl,-einitpytau#ENDIF#
-#ACC#TAU_HPUX_PYTHON_SHFLAG = -lstd_v2 -lCsup_v2 -lm -lcl -lc #ENDIF#
-
-TAU_IBM_LD_FLAGS = -binitfini:poe_remote_main #ENDIF##USE_IBMXLC#
-#GNU#TAU_IBM_LD_FLAGS = -Wl,-binitfini:poe_remote_main #ENDIF#
-#KAI#TAU_IBM_LD_FLAGS = --backend -binitfini:poe_remote_main #ENDIF#
-
-
-#PYTHON#TAU_IBM_SHFLAGS = $(TAU_IBM_PYTHON_SHFLAG) #ENDIF#
-#PYTHON#TAU_HPUX_SHFLAGS = $(TAU_HPUX_PYTHON_SHFLAG) #ENDIF#
-#SP1#TAU_EXTRA_LIBRARY_FLAGS = $(TAU_IBM_SHFLAGS) #ENDIF#
-#SOL2#TAU_EXTRA_LIBRARY_FLAGS = #ENDIF#
-#SGIMP#TAU_EXTRA_LIBRARY_FLAGS = -lmalloc #ENDIF#
-#HP#TAU_EXTRA_LIBRARY_FLAGS = $(TAU_HPUX_SHFLAGS) #ENDIF#
-
-TAU_MPI_WRAPPER_LIB= -L$(TAU_LIB_DIR) -lTauMpi$(TAU_CONFIG) #ENDIF##MPI#
-#EPILOGMPI#TAU_MPI_WRAPPER_LIB= #ENDIF#
-#EPILOGOMPI#TAU_MPI_WRAPPER_LIB= #ENDIF#
-
-##############################################
-# Build TAU_LINKER_SHOPTS
-#GNU#TAU_IBM_LINKER_SHOPTS=-Wl,-brtl -Wl,-bexpall #ENDIF#
-TAU_IBM_LINKER_SHOPTS= -brtl -bexpall #ENDIF##USE_IBMXLC#
-#KAI#TAU_IBM_LINKER_SHOPTS= --backend -brtl #ENDIF#
-#SP1#TAU_LINKER_SHOPTS= $(TAU_IBM_LINKER_SHOPTS) #ENDIF#
-
-##############################################
-# MPI _r suffix check (as in libmpi_r)
-#MPI_R_SUFFIX#TAU_MPI_R_SUFFIX=_r #ENDIF#
-
-##############################################
-# Flags to build a shared object: TAU_SHFLAGS
-#GNU#AR_SHFLAGS = -shared #ENDIF#
-#PGI#AR_SHFLAGS = -shared #ENDIF#
-#SGICC#AR_SHFLAGS = -shared #ENDIF#
-#APPLECXX#AR_SHFLAGS = -dynamiclib -flat_namespace -undefined suppress #ENDIF#
-#SOL2#AR_SHFLAGS = -G #ENDIF#
-#SUN386I#AR_SHFLAGS = -G #ENDIF#
-#SUNX86_64#AR_SHFLAGS = -G #ENDIF#
-AR_SHFLAGS = -G #ENDIF##USE_IBMXLC#
-#USE_DECCXX#AR_SHFLAGS = -shared #ENDIF#
-#USE_INTELCXX#AR_SHFLAGS = -shared #ENDIF#
-#ACC#AR_SHFLAGS = -b #ENDIF#
-TAU_SHFLAGS = $(AR_SHFLAGS) -o
-
-############# RANLIB Options #############
-TAU_RANLIB = echo "Built"
-#APPLECXX#TAU_RANLIB = ranlib #ENDIF#
-#IBMXLCAPPLE#TAU_RANLIB = ranlib #ENDIF#
-
-##############################################
-TAU_AR = ar #ENDIF#
-#SP1#TAU_AR = ar -X32 #ENDIF#
-#IBM64#TAU_AR = ar -X64 #ENDIF#
-#PPC64#TAU_AR = ar #ENDIF#
-#IBM64LINUX#TAU_AR = ar #ENDIF#
-
-
-##############################################
-# PDT OPTIONS
-# You can specify -pdtcompdir=intel -pdtarchdir=x86_64
-# If nothing is specified, PDTARCHDIR uses TAU_ARCH
-PDTARCHDIRORIG=$(TAU_ARCH)
-PDTARCHITECTURE=x86_64
-PDTARCHDIRFINAL=$(PDTARCHDIRORIG)
-#PDTARCHITECTURE#PDTARCHDIRFINAL=$(PDTARCHITECTURE)#ENDIF#
-PDTARCHDIR=$(PDTARCHDIRFINAL)
-#PDTARCH#PDTARCHDIR=$(PDTARCHDIRFINAL)/$(PDTCOMPDIR)#ENDIF#
-
-
-##############################################
-
-PROFILEOPTS = $(PROFILEOPT1) $(PROFILEOPT2) $(PROFILEOPT3) $(PROFILEOPT4) \
- $(PROFILEOPT5) $(PROFILEOPT6) $(PROFILEOPT7) $(PROFILEOPT8) \
- $(PROFILEOPT9) $(PROFILEOPT10) $(PROFILEOPT11) $(PROFILEOPT12) \
- $(PROFILEOPT13) $(PROFILEOPT14) $(PROFILEOPT15) $(PROFILEOPT16) \
- $(PROFILEOPT17) $(PROFILEOPT18) $(PROFILEOPT19) $(PROFILEOPT20) \
- $(PROFILEOPT21) $(PROFILEOPT22) $(PROFILEOPT23) $(PROFILEOPT24) \
- $(PROFILEOPT25) $(PROFILEOPT26) $(PROFILEOPT27) $(PROFILEOPT28) \
- $(PROFILEOPT29) $(PROFILEOPT30) $(PROFILEOPT31) $(PROFILEOPT32) \
- $(PROFILEOPT33) $(PROFILEOPT34) $(PROFILEOPT35) $(PROFILEOPT36) \
- $(PROFILEOPT37) $(PROFILEOPT38) $(PROFILEOPT39) $(PROFILEOPT40) \
- $(PROFILEOPT41) $(PROFILEOPT42) $(PROFILEOPT43) $(PROFILEOPT44) \
- $(PROFILEOPT45) $(PROFILEOPT46) $(PROFILEOPT47) $(PROFILEOPT48) \
- $(PROFILEOPT49) $(PROFILEOPT50) $(PROFILEOPT51) $(PROFILEOPT52) \
- $(PROFILEOPT53) $(PROFILEOPT54) $(PROFILEOPT55) $(PROFILEOPT56) \
- $(PROFILEOPT57) $(PROFILEOPT58) $(PROFILEOPT59) $(PROFILEOPT60) \
- $(PROFILEOPT61) $(PROFILEOPT62) $(PROFILEOPT63) $(PROFILEOPT64) \
- $(PROFILEOPT65) $(PROFILEOPT66) $(PROFILEOPT67) $(PROFILEOPT68) \
- $(PROFILEOPT69) $(PROFILEOPT70) $(PROFILEOPT71) $(PROFILEOPT72) \
- $(PROFILEOPT73) $(PROFILEOPT74) $(PROFILEOPT75) $(PROFILEOPT76) \
- $(TRACEOPT)
-
-##############################################
-
-TAU_LINKER_OPTS = $(TAU_LINKER_OPT1) $(TAU_LINKER_OPT2) $(TAU_LINKER_OPT3) \
- $(TAU_LINKER_OPT4) $(TAU_LINKER_OPT5) $(TAU_LINKER_OPT6) \
- $(TAU_LINKER_OPT7) $(TAU_LINKER_OPT8) $(TAU_LINKER_OPT9) \
- $(TAU_LINKER_OPT10) $(TAU_LINKER_OPT11) $(TAU_LINKER_OPT12)
-
-##############################################
-
-############# TAU Fortran ####################
-TAU_LINKER=$(TAU_CXX)
-#INTEL_FORTRAN##TAU_LINKER=$(TAU_F90) #ENDIF#
-#INTEL32_FORTRAN##TAU_LINKER=$(TAU_F90) #ENDIF#
-# Intel efc compiler acts as a linker - NO. Let C++ be the linker.
-
-##############################################
-############# TAU Options ####################
-TAUDEFS = $(PROFILEOPTS)
-
-TAUINC = -I$(TAU_INC_DIR)
-
-TAULIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -ltau$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-
-TAUMPILIBS = $(TAU_MPI_LIB)
-
-TAUMPIFLIBS = $(TAU_MPI_FLIB)
-
-### ACL S/W requirement
-TAU_DEFS = $(TAUDEFS)
-
-TAU_INCLUDE = -I$(TAU_INC_DIR)
-#PERFLIB#TAU_INCLUDE = -I$(PERFINCDIR) #ENDIF#
-#PERFLIB#TAU_DEFS = #ENDIF#
-#PERFLIB#TAU_COMPILER_EXTRA_OPTIONS=-optTau=-p #ENDIF#
-
-TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/Memory
-#IBMXLCAPPLE#TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/MemoryWrapper #ENDIF#
-#APPLECXX#TAU_INCLUDE_MEMORY = -I$(TAU_INC_DIR)/MemoryWrapper #ENDIF#
-
-TAU_LIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -ltau$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-#PERFLIB#TAU_LIBS = #ENDIF#
-
-TAU_SHLIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAUsh$(TAU_CONFIG) $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS) $(TAU_MPI_LIB)
-#PERFLIB#TAU_SHLIBS = #ENDIF#
-TAU_EXLIBS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAU $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS) $(TAU_MPI_LIB)
-
-TAU_SHLIBS_NOSHOPTS = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTAUsh$(TAU_CONFIG) $(TAU_LINKER_OPTS)
-
-TAU_DISABLE = $(TAUHELPER) -L$(TAU_LIB_DIR) -lTauDisable
-
-TAU_MPI_INCLUDE = $(TAU_MPI_INC)
-
-TAU_MPI_LIBS = $(TAU_MPI_LIB)
-
-TAU_MPI_FLIBS = $(TAU_MPI_FLIB)
-
-## TAU TRACE INPUT LIBRARY (can build a trace converter using TAU TIL)
-TAU_TRACE_INPUT_LIB = -L$(TAU_LIB_DIR) -lTAU_traceinput$(TAU_CONFIG)
-
-## Don't include -lpthread or -lsmarts. Let app. do that.
-#############################################
-## IBM SPECIFIC CHANGES TO TAU_MPI_LIBS
-#SP1#TAU_MPI_LDFLAGS = $(TAU_IBM_LD_FLAGS) #ENDIF#
-TAU_LDFLAGS = $(TAU_MPI_LDFLAGS) #ENDIF##MPI#
-#SP1#TAU_IBM_MPI_LIBS = $(TAU_MPI_LIB) -L$(TAU_MPILIB_DIR)/ip -lvtd$(TAU_MPI_R_SUFFIX) #ENDIF#
-#SP1#TAU_IBM_FMPI_LIBS = $(TAU_MPI_FLIB) -L$(TAU_MPILIB_DIR)/ip -lvtd$(TAU_MPI_R_SUFFIX) #ENDIF#
-#SP1#TAU_MPI_LIBS_FLAGS= $(TAU_IBM_MPI_LIBS) #ENDIF#
-#SP1#TAU_MPI_FLIBS_FLAGS = $(TAU_IBM_MPI_FLIBS) #ENDIF#
-TAU_MPI_LIBS_FLAGS = $(TAU_MPI_LIB) #ENDIF##MPI#
-TAU_MPI_FLIBS_FLAGS = $(TAU_MPI_FLIB) #ENDIF##MPI#
-TAU_MPI_LIBS = $(TAU_MPI_LIBS_FLAGS) #ENDIF##MPI#
-TAU_MPI_FLIBS = $(TAU_MPI_FLIBS_FLAGS) #ENDIF##MPI#
-
-#SP1#TAUMPILIBS = $(TAU_MPI_LIBS) #ENDIF#
-#SP1#TAUMPIFLIBS = $(TAU_MPI_FLIBS) #ENDIF#
-#############################################
-#SHMEM#TAU_SHMEM_OBJS = TauShmemCray.o #ENDIF#
-#SP1#TAU_SHMEM_OBJS = TauShmemTurbo.o #ENDIF#
-#GPSHMEM#TAU_SHMEM_OBJS = TauShmemGpshmem.o #ENDIF#
-
-TAU_SHMEM_INCLUDE = $(TAU_SHMEM_INC)
-
-TAU_SHMEM_LIBS = -L$(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/ -lTauShmem$(TAU_CONFIG) $(TAU_SHMEM_LIB)
-#############################################
-# TAU COMPILER SHELL SCRIPT OPTIONS
-TAUCOMPILEROPTS= -optPdtDir="$(PDTDIR)/${PDTARCHDIR}"\
- -optPdtCOpts="$(TAU_INCLUDE) $(TAU_DEFS) $(TAU_MPI_INCLUDE)"\
- -optPdtCxxOpts="$(TAU_INCLUDE) $(TAU_DEFS) $(TAU_MPI_INCLUDE)"\
- -optTauInstr="$(TAU_BIN_DIR)/tau_instrumentor" \
- -optNoMpi \
- -optOpariDir="$(OPARIDIR)" -optOpariTool="$(TAU_OPARI_TOOL)" \
- -optTauCC="$(TAU_CC)" \
- -optTauIncludes="$(TAU_INCLUDE) $(TAU_MPI_INCLUDE)" \
- -optTauDefs="$(TAU_DEFS)" \
- -optTauCompile="$(TAU_INCLUDE) $(TAU_MPI_INCLUDE) $(TAU_DEFS) "\
- -optLinking="$(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS)"\
- -optSharedLinking="$(TAU_MPI_FLIBS) $(TAU_EXLIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS)"\
- $(TAU_COMPILER_EXTRA_OPTIONS) \
- -optIncludeMemory="$(TAU_INCLUDE_MEMORY)"
-#############################################
-
-TAU_SHAREDLIBS=$(TAUHELPER) -L$(TAU_LIB_DIR) -lTAU $(TAU_LINKER_OPTS) $(TAU_LINKER_SHOPTS)
-SHAREDEXTRAS=
-#FORCESHARED#SHAREDEXTRAS=-optSharedLinkReset="$(TAU_SHAREDLIBS) $(TAU_LDFLAGS) $(TAU_CXXLIBS) $(TAU_MPI_NOWRAP_FLIB)" -optShared #ENDIF#
-TAU_COMPILER=$(TAU_BIN_DIR)/tau_compiler.sh $(TAUCOMPILEROPTS) $(SHAREDEXTRAS)
-#############################################
-# These options could be included in the application Makefile as
-#CFLAGS = $(TAUDEFS) $(TAUINC)
-#
-#LIBS = $(TAULIBS)
-#
-# To run the application without Profiling/Tracing use
-#CFLAGS = $(TAUINC)
-# Don't use TAUDEFS but do include TAUINC
-# Also ignore TAULIBS when Profiling/Tracing is not used.
-#############################################
-
all: no_option
- @echo "give optin GAB or E0LL2Y"
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
.SUFFIXES: .F
.F.o:
cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- MP.o compare_s1.o prng.o \
+ MP.o compare_s1.o prng_32.o \
banach.o rmsd.o elecont.o dihed_cons.o \
sc_move.o local_move.o \
intcartderiv.o lagrangian_lesyng.o\
no_option:
-GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
-DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
GAB: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_GAB.exe
GAB: ${object} xdrf/libxdrf.a
${FC} ${FFLAGS} cinfo.f
${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \
+4P: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_4P.exe
+4P: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN -DMP -DMPI \
-DSPLITELE -DLANG0
E0LL2Y: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe
E0LL2Y: ${object} xdrf/libxdrf.a
+++ /dev/null
-CPPFLAGS = -WF,-DUNRES -WF,-DMP -WF,-DMPI -WF,-DSPLITELE -WF,-DISNAN -WF,-DAIX
-#-DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-INSTALL_DIR =
-#
-FC= mpxlf90 -qfixed -w
-
-OPT = -q64
-
-FFLAGS = -c ${OPT} -O3
-FFLAGS1 = -c ${OPT} -O2
-FFLAGS2 = -c ${OPT} -O
-FFLAGSE = -c ${OPT} -O4
-
-
-BIN = ${HOME}/UNRES/bin/unres_MD.exe
-LIBS = -qipa
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-
-unresCSA: ${objectCSA}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objectCSA} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
- /bin/rm *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
+++ /dev/null
-#
-FC= ftn
-OPT = -fast \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
--Mprefetch=distance:8,nta
-
-#OPT = -C -g
-#OPT1 = -g -fast
-OPT1 = ${OPT}
-OPT2 = -fast
-OPT2 = ${OPT}
-OPTE = ${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-
-CFLAGS = -DSGI -c
-
-BIN = ../bin/unres_MD_Tc_procor-newmat-novec-noparint_barrier_corr-split.exe
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 \
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DPARVEC #-DPARINT -DPARINTDER
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-FC= ftn
-OPT = -fast \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
--Mprefetch=distance:8,nta
-
-#OPT = -C -g
-#OPT1 = -g -fast
-OPT1 = -fast
-OPT2 = -fast
-OPT2 = ${OPT}
-OPTE = ${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-
-CFLAGS = -DSGI -c
-
-BIN = ../bin/unres_MD_Tc_procor-newmat-matgather-oldparm.exe
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 -DPARVEC -DPARINT -DPARINTDER \
- -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-#FC= ftn
-TAU_MAKEFILE=/usr/local/packages/TAU-2.17/tau-2.17/xt3/lib/Makefile.tau-mpi-pdt-pgi
-FC=tau_f90.sh
-OPT = -fast \
--Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
--Mprefetch=distance:8,nta
-
-#OPT = -C -g
-#OPT1 = -g -fast
-OPT1 = -fast
-OPT2 = -fast
-OPT2 = ${OPT}
-OPTE = ${OPT}
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = ${FFLAGS}
-
-CFLAGS = -DSGI -c
-
-BIN = ../bin/unres_MD_Tc_procor-newmat-noparint-barrier-tau.exe
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DPGI \
- -DSPLITELE -DPROCOR -DAMD64 -DLANG0 -DPARVEC
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object} proc_proc.o
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} proc_proc.o cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.pp.[fF] *.pp.inst.[fF]
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-CPPFLAGS = -DPROCOR -DLINUX -DUNRES -DMP -DMPI -DPGI -DISNAN \
- -DSPLITELE -DAMD64 -DLANG0
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-#-DCRYST_TOR
-# -DPROCOR
-# -DTSCSC
-#-DTIMING \
-# -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
-# -DMOMENT
-#-DPARVEC
-#-DPARINT -DPARINTDER
-
-#INSTALL_DIR = /users/local/mpi64/mpich-1.2.7p1/
-#INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-#INSTALL_DIR = /users/software/mpich2.x86_64/
-#INSTALL_DIR = /opt/mpi/mvapich2
-INSTALL_DIR = /opt/mpi/mvapich
-
-FC= ifort
-FCL= ${INSTALL_DIR}/bin/mpif77
-
-OPT = -O3 -ip -w -xHost
-
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include
-FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include
-FFLAGSE = -c -w -xHost -O3 -ipo -ipo_obj -no-prec-div -opt_report -I$(INSTALL_DIR)/include
-
-
-BIN = ../bin/unres_Tc_procor_new_em64_hremd_mpich1.exe
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf_em64/libxdrf.a -lpthread
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng_32.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FCL} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o *.il
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.F
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-energy_p_new_barrier.o : energy_p_new_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F
-
-gradient_p.o : gradient_p.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F
-
-energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-MD_A-MTS.o : MD_A-MTS.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} add.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS2} eigen.f
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
+++ /dev/null
-#
-FC=/bgsys/drivers/ppcfloor/comm/bin/mpixlf77
-OPT = -O4 -qarch=450 -qtune=450
-#OPT = -O3 -qarch=450 -qtune=450 -qdebug=function_trace
-#OPT = -O -qarch=450 -qtune=450
-#OPT = -O0 -C -g -qarch=450 -qtune=450 #-qdebug=function_trace
-#-Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3 \
-#-Mprefetch=distance:8,nta
-
-#OPT1 = -O -g -qarch=450 -qtune=450
-#OPT1 = -O -g -qarch=450 -qtune=450 -qdebug=function_trace
-OPT1 = ${OPT}
-#OPT2 = -O2 -qarch=450 -qtune=450
-#OPT2 = -O2 -qarch=450 -qtune=450 -qdebug=function_trace
-OPT2 = ${OPT}
-#OPTE = -O4 -qarch=450 -qtune=450
-#OPTE = -O4 -qarch=450 -qtune=450
-OPTE=${OPT}
-
-CFLAGS = -c
-FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include
-FFLAGS1 = -c ${OPT1} -I$(INSTALL_DIR)/include
-FFLAGS2 = -c ${OPT2} -I$(INSTALL_DIR)/include
-FFLAGSE = -c ${OPTE} -I$(INSTALL_DIR)/include
-
-BIN = ../bin/unres_MD_Tc_procor-newparm-O4-parcorr.exe
-#BIN = ../bin/unres_MD_Tc_procor-newparm-O4-PARINT-parcorr.exe
-#BIN = ../bin/unres_MD_Tc_procor-newparm-parvecmatint-O4-notau1.exe
-#BIN = ../bin/unres_MD_Tc_procor-newparm-O4-notau1.exe
-#LIBS = xdrf/libxdrf.a /home/liwo/UNRES/LIB/libmemmon.a
-LIBS = xdrf/libxdrf.a
-
-CPPFLAGS = -WF,-DAIX -WF,-DISNAN -WF,-DUNRES -WF,-DMP -WF,-DMPI -WF,-DPGI \
- -WF,-DSPLITELE -WF,-DPROCOR -WF,-DAMD64 -WF,-DLANG0
-#-WF,-DPARINT -WF,-DPARINTDER
-#-WF,-DPARVEC -WF,-DPARMAT -WF,-DMATGATHER
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-
-all: unres
-
-obj: ${object}
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \
- matmult.o readrtns_CSA.o parmread.o gen_rand_conf.o printmat.o map.o \
- pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
- cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \
- energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \
- cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \
- mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \
- eigen.o blas.o add.o entmcm.o minim_mcmf.o \
- together.o csa.o minim_jlee.o shift.o diff12.o bank.o newconf.o ran.o \
- indexx.o MP.o compare_s1.o prng.o \
- test.o banach.o distfit.o rmsd.o elecont.o dihed_cons.o \
- sc_move.o local_move.o \
- intcartderiv.o lagrangian_lesyng.o\
- stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \
- surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
- q_measure.o gnmr1.o
-
-unres: ${object}
- ${CC} -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
-
-newconf.o: newconf.f
- ${FC} ${FFLAGS} ${CPPFLAGS} newconf.f
-
-bank.o: bank.F
- ${FC} ${FFLAGS} ${CPPFLAGS} bank.F
-
-diff12.o: diff12.f
- ${FC} ${FFLAGS} ${CPPFLAGS} diff12.f
-
-csa.o: csa.f
- ${FC} ${FFLAGS} ${CPPFLAGS} csa.f
-
-shift.o: shift.F
- ${FC} ${FFLAGS} ${CPPFLAGS} shift.F
-
-ran.o: ran.f
- ${FC} ${FFLAGS} ${CPPFLAGS} ran.f
-
-together.o: together.F
- ${FC} ${FFLAGS} ${CPPFLAGS} together.F
-
-test.o: test.F
- ${FC} ${FFLAGS} ${CPPFLAGS} test.F
-
-chainbuild.o: chainbuild.F
- ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F
-
-matmult.o: matmult.f
- ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f
-
-parmread.o : parmread.F
- ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F
-
-intcor.o : intcor.f
- ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f
-
-cartder.o : cartder.F
- ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F
-
-readpdb.o : readpdb.f
- ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.f
-
-sumsld.o : sumsld.f
- ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f
-
-cored.o : cored.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f
-
-rmdd.o : rmdd.f
- ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f
-
-eigen.o : eigen.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} eigen.f
-
-blas.o : blas.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} blas.f
-
-add.o : add.f
- ${FC} ${FFLAGS1} ${CPPFLAGS} add.f
-
-energy_p_new.o : energy_p_new.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new.F
-
-energy_p_new-sep.o : energy_p_new-sep.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep.F
-
-lagrangian_lesyng.o : lagrangian_lesyng.F
- ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F
-
-proc_proc.o: proc_proc.c
- ${CC} ${CFLAGS} proc_proc.c
-
-compinfo: compinfo.c
- ${CC} ${CFLAGS} compinfo.c
PP = /lib/cpp -P
all:
- @echo "Specify force field: GAB or E0LL2Y"
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
.SUFFIXES: .F
.F.o:
surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
q_measure.o gnmr1.o test.o ssMD.o
-GAB: CPPFLAGS = -DPROCOR -DLINUX -DUNRES -DISNAN \
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DAMD64 -DUNRES -DISNAN \
-DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
GAB: BIN = ../../../bin/unres/MD/unres_gfortran_single_GAB.exe
GAB: ${object} xdrf/libxdrf.a
${FC} ${FFLAGS} cinfo.f
${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DUNRES -DISNAN \
+4P: CPPFLAGS = -DLINUX -DAMD64 -DUNRES -DISNAN \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/MD/unres_gfortran_single_4P.exe
+4P: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DAMD64 -DUNRES -DISNAN \
-DSPLITELE -DLANG0
E0LL2Y: BIN = ../../../bin/unres/MD/unres_gfortran_single_E0LL2Y.exe
E0LL2Y: ${object} xdrf/libxdrf.a
PP = /lib/cpp -P
all:
- @echo "Specify force field: GAB or E0LL2Y"
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
.SUFFIXES: .F
.F.o:
surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \
q_measure.o gnmr1.o test.o ssMD.o
-GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN \
+no_option:
+
+GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN \
-DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
GAB: BIN = ../../../bin/unres/MD/unres_ifort_single_GAB.exe
GAB: ${object} xdrf/libxdrf.a
${FC} ${FFLAGS} cinfo.f
${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
-E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN \
+4P: CPPFLAGS = -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/MD/unres_ifort_single_4P.exe
+4P: ${object} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
+E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DAMD64 -DUNRES -DISNAN \
-DSPLITELE -DLANG0
E0LL2Y: BIN = ../../../bin/unres/MD/unres_ifort_single_E0LL2Y.exe
E0LL2Y: ${object} xdrf/libxdrf.a
C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C
-C 3 2 110
+C 3 2 116
subroutine cinfo
include 'COMMON.IOUNITS'
write(iout,*)'++++ Compile info ++++'
- write(iout,*)'Version 3.2 build 110'
- write(iout,*)'compiled Tue Apr 30 09:32:51 2013'
- write(iout,*)'compiled by czarek@piasek3'
+ write(iout,*)'Version 3.2 build 116'
+ write(iout,*)'compiled Thu Nov 27 09:56:51 2014'
+ write(iout,*)'compiled by adam@mmka'
write(iout,*)'OS name: Linux '
- write(iout,*)'OS release: 2.6.32-45-generic '
+ write(iout,*)'OS release: 3.2.0-72-generic '
write(iout,*)'OS version:',
- & ' #104-Ubuntu SMP Tue Feb 19 21:20:09 UTC 2013 '
+ & ' #107-Ubuntu SMP Thu Nov 6 14:24:01 UTC 2014 '
write(iout,*)'flags:'
- write(iout,*)'INSTALL_DIR = /users/software/mpich-1.2.7p1_int...'
- write(iout,*)'FC= ifort'
- write(iout,*)'OPT = -O3 -ip '
- write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include '
- write(iout,*)'FFLAGS1 = -c -g -CA -CB -I$(INSTALL_DIR)/inclu...'
- write(iout,*)'FFLAGS2 = -c -g -O0 -I$(INSTALL_DIR)/include '
- write(iout,*)'FFLAGSE = -c -O3 -ipo -opt_report -I$(INSTALL...'
- write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdr...'
+ write(iout,*)'INSTALL_DIR = /users/software/mpich2-1.0.7'
+ write(iout,*)'FC= gfortran'
+ write(iout,*)'OPT = -O'
+ write(iout,*)'FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGS1 = -c -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGS2 = -c -O0 -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGS3 = -c -O -I$(INSTALL_DIR)/include'
+ write(iout,*)'FFLAGSE = -c -O3 -I$(INSTALL_DIR)/include'
+ write(iout,*)'LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpthread x...'
write(iout,*)'ARCH = LINUX'
write(iout,*)'PP = /lib/cpp -P'
write(iout,*)'object = unres.o arcos.o cartprint.o chainbuild...'
- write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES ...'
- write(iout,*)'GAB: BIN = ../../../bin/unres/MD/unres_ifort_MP...'
- write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNR...'
- write(iout,*)'E0LL2Y: BIN = ../../../bin/unres/MD/unres_ifort...'
+ write(iout,*)'GAB: CPPFLAGS = -DPROCOR -DLINUX -DG77 -DAMD64 ...'
+ write(iout,*)'GAB: BIN = ../../../bin/unres/MD/unres_gfort_MP...'
+ write(iout,*)'4P: CPPFLAGS = -DLINUX -DG77 -DAMD64 -DUNRES -D...'
+ write(iout,*)'4P: BIN = ../../../bin/unres/MD/unres_gfort_MPI...'
+ write(iout,*)'E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DG77 -DAMD...'
+ write(iout,*)'E0LL2Y: BIN = ../../../bin/unres/MD/unres_gfort...'
write(iout,*)'++++ End of compile info ++++'
return
end
ARCH = LINUX
PP = /lib/cpp -P
-
-all: unres
+all: no_option
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
.SUFFIXES: .F.f
.F.o:
MP.o printmat.o convert.o int_to_cart.o \
djacob.o gen_rand_conf.o sc_move.o
+no_option:
+
GAB: CPPFLAGS = -DPROCOR -DLINUX -DUNRES -DISNAN \
-DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
GAB: BIN = ../../../bin/unres/MINIM/unres_gfortran_MIN_single_GAB.exe
${FC} ${FFLAGS} cinfo.f
${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+4P: CPPFLAGS = -DLINUX -DUNRES -DISNAN \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/MINIM/unres_gfortran_MIN_single_4P.exe
+4P: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DUNRES -DISNAN \
-DSPLITELE -DLANG0
E0LL2Y: BIN = ../../../bin/unres/MINIM/unres_gfortran_MIN_single_E0LL2Y.exe
ARCH = LINUX
PP = /lib/cpp -P
-
-all: unres
+all: no_option
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
.SUFFIXES: .F.f
.F.o:
.f.o:
${FC} ${FFLAGS} ${CPPFLAGS} $*.f
-
object = unres_min.o arcos.o cartprint.o chainbuild.o initialize_p.o \
matmult.o readrtns_min.o parmread.o \
pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \
MP.o printmat.o convert.o int_to_cart.o \
djacob.o gen_rand_conf.o sc_move.o refsys.o
+no_option:
+
GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN \
-DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
GAB: BIN = ../../../bin/unres/MINIM/unres_ifort_MIN_single_GAB.exe
${FC} ${FFLAGS} cinfo.f
${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+4P: CPPFLAGS = -DLINUX -DPGI -DUNRES -DISNAN \
+ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC
+4P: BIN = ../../../bin/unres/MINIM/unres_ifort_MIN_single_4P.exe
+4P: ${object}
+ cc -o compinfo compinfo.c
+ ./compinfo | true
+ ${FC} ${FFLAGS} cinfo.f
+ ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN}
+
E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN \
-DSPLITELE -DLANG0
E0LL2Y: BIN = ../../../bin/unres/MINIM/unres_ifort_MIN_single_E0LL2Y.exe
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN = ../bin
-CC = cc
-FC = ifort
-#OPT = -O3 -ip -w
-OPT = -g -CB
-FFLAGS = -c ${OPT} -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = -c -g -C -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- gnmr1.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- read_dist_constr.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o permut.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-D-sccor-oldparm
-
-clean:
- /bin/rm *.o
--- /dev/null
+Makefile_MPICH_ifort
\ No newline at end of file
+++ /dev/null
-BIN = /users/adam/ZSCOREZ/bin
-CC = cc
-FC = mpif90
-#FC = ifc
-OPT = -fast -pc 64 -tp p6 -Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres
-FFLAGS = ${OPT} -c -I. -I./include_unres
-LIBS = -L../../MEY_MD/src_Tc/xdrf -lxdrf
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} -Wl,-Bstatic ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-T-sccor
-
-clean:
- /bin/rm *.o
+++ /dev/null
-BIN = ../bin
-CC = cc
-FC = mpxlf90 -qfixed -w
-OPT = -q64
-FFLAGS = -c ${OPT} -O3 -I./include_unres
-LIBS = xdrf/libxdrf.o xdrf/ftocstr.o
-CPPFLAGS = -WF,-DMPI -WF,-DAIX -WF,-DUNRES -WF,-DSPLITELE -WF,-DPROCOR -WF,-DISNAN
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- rescode.o \
- setup_var.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm1-T-procor
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /usr/local/mpich-1.2.7p1_pgi64-6.2-3_ssh
-BIN = ./
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I../src_MD -I/users/adam/UNRES/NEW/src -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I../src_MD -I/users/adam/UNRES/NEW/src -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -I. -I/users/adam/ZSCOREZ/src_MD -I/users/adam/UNRES/NEW/src -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} -Wl,-Bstatic ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm1-OPTERON-T__
-
-clean:
- /bin/rm *.o
+++ /dev/null
-CPPFLAGS = -WF,-DOLD_GINV \
- -WF,-DUNRES -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DISNAN \
- -WF,-DAIX -WF,-DLANG0 -WF,-DPROCOR -WF,-DJUBL
-#-WF,-DNOXDR
-#-WF,-DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-BGLSYS = /bgl/BlueLight/ppcfloor/bglsys
-
-CC = /usr/bin/blrts_xlc
-CPPC = /usr/bin/blrts_xlc
-FC = /usr/bin/blrts_xlf90
-#-pg -g
-
-# try -qarch=440 first, then use -qarch=440d for 2nd FPU later on
-# (SIMDization requires at least -O3)
-# use -qlist -qsource with 440d and look for Parallel ASM instructions.
-#
-OPT= -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440 -qfixed -w -qnosave
-CFLAGS= -O3 -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440
-FFLAGS= -c -O3 ${OPT} -I./include_unres
-#
-LIBS_MPI = -lmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-LIBSF_MPI = -lmpich.rts -lfmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-
-FFLAGS1 = -c ${OPT} -O2
-FFLAGS2 = -c ${OPT} -O
-FFLAGSE = -c ${OPT} -O4
-
-
-BIN = ${HOME}/UNRES/bin/wham_multparm-T-procor.rts
-LIBS = ${LIBSF_MPI} ../src_Tc/xdrf/libxdrf.a
-#LIBS = ${LIBSF_MPI}
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objects = \
- wham_multparm.o \
- cxread.o \
- enecalc.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- rescode.o \
- setup_var.o \
- store_parm.o \
- timing.o \
- wham_calc.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-
-unresCSA: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objects} ${objects_compar} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
+++ /dev/null
-BIN = ../bin
-CC = cc
-CFLAGS = -DAIX -c
-FC = mpxlf90 -qlistopt -qfixed -w
-OPT = -q64
-FFLAGS = -c ${OPT} -O3 -I./include_unres
-#FFLAGS = -c ${OPT} -g -C -I./include_unres
-LIBS = xdrf/libxdrf.o xdrf/ftocstr.o
-CPPFLAGS = -WF,-DMPI -WF,-DAIX -WF,-DUNRES -WF,-DSPLITELE -WF,-DPROCOR -WF,-DISNAN
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-.SUFFIXES: .c
-.c.o:
- ${CC} ${CFLAGS} $*.c
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-T-procor-c1
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN = ../bin
-FC= ifort
-#OPT = -mcmodel=medium -O3 -ip -w
-OPT = -mcmodel=medium -g -CB
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DISNAN -DAMD64
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -static-intel -o ${BIN}/wham_multparm-ham_rep
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN = ../bin
-CC = cc
-FC = ifort
-#OPT = -O3 -ip -w
-OPT = -g -CB
-FFLAGS = -c ${OPT} -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = -c -g -C -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- gnmr1.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- read_dist_constr.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o permut.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-D-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-#OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64 -C -g
-OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- gnmr1.f \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o -Bstatic_pgi \
- ${LIBS} -o ${BIN}/wham_multparm-hamrep-sep-D
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA -DFUNCT
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o -Bstatic_pgi \
- ${LIBS} -o ${BIN}/wham_multparm-OPTERON-SCT-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA -DFUNCTH
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} -Bstatic_pgi cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-OPTERON-SCTF-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- gnmr1.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -Bstatic -o ${BIN}/wham_multparm-OPTERON-D-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-BIN = /users/adam/ZSCOREZ/bin
-CC = cc
-FC = mpif90
-#FC = ifc
-OPT = -fast -pc 64 -tp p6 -Minline=name:scalar2,scalar,transpose2,matvec2,prodmat3
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres
-FFLAGS = ${OPT} -c -I. -I./include_unres
-LIBS = -L../../MEY_MD/src_Tc/xdrf -lxdrf
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} -Wl,-Bstatic ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-T-sccor
-
-clean:
- /bin/rm *.o
+++ /dev/null
-BIN = ../bin
-CC = cc
-FC = mpxlf90 -qfixed -w
-OPT = -q64
-FFLAGS = -c ${OPT} -O3 -I./include_unres
-LIBS = xdrf/libxdrf.o xdrf/ftocstr.o
-CPPFLAGS = -WF,-DMPI -WF,-DAIX -WF,-DUNRES -WF,-DSPLITELE -WF,-DPROCOR -WF,-DISNAN
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- rescode.o \
- setup_var.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm1-T-procor
-
-clean:
- /bin/rm *.o
angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
+all: no_option
+ @echo "Specify force field: GAB, 4P or E0LL2Y"
+
+no_option:
+
GAB: CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DISNAN -DAMD64 \
-DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DWHAM
GAB: ${objects} ${objects_compar} xdrf/libxdrf.a
./compinfo
${FC} -c ${FFLAGS} cinfo.f
$(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -static-intel -o ${BIN}/wham_ifort_MPICH_GAB-DEBUG.exe
+ ${LIBS} -static-intel -o ${BIN}/wham_ifort_MPICH_GAB.exe
+
+4P: CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPGI -DISNAN -DAMD64 \
+ -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DWHAM
+4P: ${objects} ${objects_compar} xdrf/libxdrf.a
+ cc -o compinfo compinfo.c
+ ./compinfo
+ ${FC} -c ${FFLAGS} cinfo.f
+ $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
+ ${LIBS} -static-intel -o ${BIN}/wham_ifort_MPICH_4P.exe
E0LL2Y: CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DISNAN -DAMD64 -DWHAM
E0LL2Y: ${objects} ${objects_compar} xdrf/libxdrf.a
./compinfo
${FC} -c ${FFLAGS} cinfo.f
$(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -static-intel -o ${BIN}/wham_ifort_MPICH_E0LL2Y-DEBUG.exe
+ ${LIBS} -static-intel -o ${BIN}/wham_ifort_MPICH_E0LL2Y.exe
xdrf/libxdrf.a:
cd xdrf && make
+++ /dev/null
-CPPFLAGS = -WF,-DOLD_GINV \
- -WF,-DUNRES -WF,-DMPI \
- -WF,-DSPLITELE -WF,-DISNAN \
- -WF,-DAIX -WF,-DLANG0 -WF,-DPROCOR -WF,-DJUBL
-#-WF,-DNOXDR
-#-WF,-DPROCOR
-## -DMOMENT
-#-DCO_BIAS
-#-DCRYST_TOR
-#-DDEBUG
-
-BGLSYS = /bgl/BlueLight/ppcfloor/bglsys
-
-CC = /usr/bin/blrts_xlc
-CPPC = /usr/bin/blrts_xlc
-FC = /usr/bin/blrts_xlf90
-#-pg -g
-
-# try -qarch=440 first, then use -qarch=440d for 2nd FPU later on
-# (SIMDization requires at least -O3)
-# use -qlist -qsource with 440d and look for Parallel ASM instructions.
-#
-OPT= -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440 -qfixed -w -qnosave
-CFLAGS= -O3 -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440
-FFLAGS= -c -O3 ${OPT} -I./include_unres
-#
-LIBS_MPI = -lmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-LIBSF_MPI = -lmpich.rts -lfmpich.rts -lmsglayer.rts -lrts.rts -ldevices.rts
-
-FFLAGS1 = -c ${OPT} -O2
-FFLAGS2 = -c ${OPT} -O
-FFLAGSE = -c ${OPT} -O4
-
-
-BIN = ${HOME}/UNRES/bin/wham_multparm-T-procor.rts
-LIBS = ${LIBSF_MPI} ../src_Tc/xdrf/libxdrf.a
-#LIBS = ${LIBSF_MPI}
-
-ARCH = LINUX
-PP = /lib/cpp -P
-
-all: unresCSA
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-
-objects = \
- wham_multparm.o \
- cxread.o \
- enecalc.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- rescode.o \
- setup_var.o \
- store_parm.o \
- timing.o \
- wham_calc.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-
-unresCSA: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo | true
- ${FC} ${FFLAGS} cinfo.f
- ${FC} ${OPT} ${objects} ${objects_compar} cinfo.o ${LIBS} -o ${BIN}
-
-
-clean:
- /bin/rm *.o
+++ /dev/null
-BIN = ../bin
-CC = cc
-CFLAGS = -DAIX -c
-FC = mpxlf90 -qlistopt -qfixed -w
-OPT = -q64
-FFLAGS = -c ${OPT} -O3 -I./include_unres
-#FFLAGS = -c ${OPT} -g -C -I./include_unres
-LIBS = xdrf/libxdrf.o xdrf/ftocstr.o
-CPPFLAGS = -WF,-DMPI -WF,-DAIX -WF,-DUNRES -WF,-DSPLITELE -WF,-DPROCOR -WF,-DISNAN
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-.SUFFIXES: .c
-.c.o:
- ${CC} ${CFLAGS} $*.c
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-T-procor-c1
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh
-BIN = ../bin
-FC= ifort
-#OPT = -mcmodel=medium -O3 -ip -w
-OPT = -mcmodel=medium -g -CB
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DISNAN -DAMD64
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -static-intel -o ${BIN}/wham_multparm-ham_rep
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-#OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64 -C -g
-OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o -Bstatic_pgi \
- ${LIBS} -o ${BIN}/wham_multparm-hamrep-sep
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA -DFUNCT
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o -Bstatic_pgi \
- ${LIBS} -o ${BIN}/wham_multparm-OPTERON-SCT-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /users/software/mpich-1.2.7p1_pgi_9.0_64bit_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA -DFUNCTH
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} -Bstatic_pgi cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-OPTERON-SCTF-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-INSTALL_DIR = /usr/local/mpich-1.2.7p1_pgi64-6.2-3_ssh
-BIN = ../bin
-CC = cc
-FC = pgf90
-#FC = ifc
-OPT = -mcmodel=medium -Mlarge_arrays -fast -pc 64 -tp amd64
-#OPT = -mcmodel=medium -Mlarge_arrays -tp amd64
-#FFLAGS = ${OPT} -g -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-#FFLAGS = ${OPT} -c -C -g -I. -I./include_unres -I$(INSTALL_DIR)/include
-FFLAGS = ${OPT} -c -I. -I./include_unres -I$(INSTALL_DIR)/include
-LIBS = -L$(INSTALL_DIR)/lib -lmpich -lpmpich xdrf/libxdrf.a
-#LIBS = -L$(INSTALL_DIR)/lib_pgi -lmpich -lpmpich -Vaxlib
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DMOMENT -DCHECKGRAD -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DCHECKGRAD -DPGI -DMYGETENV
-CPPFLAGS = -DMPI -DLINUX -DUNRES -DSPLITELE -DPROCOR -DPGI -DCRYST_BOND -DCRYST_SC -DCRYST_THETA
-#CPPFLAGS = -DMPI -DLINUX -DUNRES -DPGI
-#CPPFLAGS = -DMPI -DLINUX -DUNRES
-
-.f.o:
- ${FC} ${FFLAGS} $*.f
-
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-
-all: make_dbase
-
-objects = \
- wham_multparm.o \
- bxread.o \
- xread.o \
- cxread.o \
- enecalc1.o \
- energy_p_new.o \
- initialize_p.o \
- molread_zs.o \
- openunits.o \
- readrtns.o \
- arcos.o \
- cartder.o \
- cartprint.o \
- chainbuild.o \
- geomout.o \
- icant.o \
- intcor.o \
- int_from_cart.o \
- make_ensemble1.o \
- matmult.o \
- misc.o \
- mygetenv.o \
- parmread.o \
- pinorm.o \
- printmat.o \
- proc_proc.o \
- rescode.o \
- setup_var.o \
- slices.o \
- store_parm.o \
- timing.o \
- wham_calc1.o
-
-objects_compar = \
- readrtns_compar.o \
- readpdb.o fitsq.o contact.o \
- elecont.o contfunc.o cont_frag.o conf_compar.o match_contact.o \
- angnorm.o odlodc.o promienie.o qwolynes.o read_ref_str.o \
- rmscalc.o secondary.o proc_cont.o define_pairs.o mysort.o
-
-make_dbase: ${objects} ${objects_compar}
- cc -o compinfo compinfo.c
- ./compinfo
- ${FC} -c ${FFLAGS} cinfo.f
- $(FC) ${OPT} ${objects} ${objects_compar} cinfo.o \
- ${LIBS} -o ${BIN}/wham_multparm-OPTERON-SCTF-sccor-oldparm
-
-clean:
- /bin/rm *.o
+++ /dev/null
-# Set of programs to convert UNRES xdrf format (compressed Cartesian coordinates) to PDF
-# or raw-Cartesian format (*.x) or to extract backbone angular coordinates (*.ang)
-# The pdb files can be constructed from canonical or MREMD trajectories.
-#
-# The xdrf library is required
-#
-# Programs
-#
-# xdrf2pdb : converts a single cx trajectory file to PDB format
-# xdrf2x : converts a single cx trajectory file to raw-coordinate (x) format
-# xdrf2ang : extracts backbone angles from a cx trajectory file
-# xdrf2pdb-m : converts a selected trajectory of a MREMD run dumpend into a cx file to PDB format
-#
-# xdrf2pdb1 : converts conformation(s) selected from a wham post-processing run into PDB format
-# xdrf2x1 : converts conformation(s) selected from a wham post-processing run into raw (x) format.
-#
-# 9/23/2010 A. Liwo
-
-FC=gfortran
-
-BINDIR = ../../../bin
-
-#OPT = -fast
-OPT =
-
-FFLAGS = -c ${OPT}
-
-CPPFLAGS = -DLINUX -DUNRES -DMP -DMPI -DSPLITELE -DPROCOR -DNEWUNRES
-
-M4 = m4
-M4FILE = underscore.m4
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-.c.o:
- ${CC} -c ${CPPFLAGS} $*.c
-
-xdrf2pdb: xdrf2pdb.o geomout.o misc.o rescode.o nazwy.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2pdb-mult xdrf2pdb.o geomout.o rescode.o misc.o nazwy.o xdrf/libxdrf.a
-
-xdrf2pdb-m: xdrf2pdb-m.o geomout.o misc.o rescode.o nazwy.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2pdb-m-mult xdrf2pdb-m.o geomout.o rescode.o misc.o nazwy.o xdrf/libxdrf.a
-
-xdrf2pdb1: xdrf2pdb1.o geomout.o misc.o rescode.o nazwy.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2pdb1-mult xdrf2pdb1.o geomout.o rescode.o misc.o nazwy.o xdrf/libxdrf.a
-
-clean:
- rm -f *.o
--- /dev/null
+Makefile_ifort
\ No newline at end of file
-../src/xdrf
\ No newline at end of file
+../../lib/xdrf
\ No newline at end of file
+++ /dev/null
-# Set of programs to convert UNRES xdrf format (compressed Cartesian coordinates) to PDF
-# or raw-Cartesian format (*.x) or to extract backbone angular coordinates (*.ang)
-# The pdb files can be constructed from canonical or MREMD trajectories.
-#
-# The xdrf library is required
-#
-# Programs
-#
-# xdrf2pdb : converts a single cx trajectory file to PDB format
-# xdrf2x : converts a single cx trajectory file to raw-coordinate (x) format
-# xdrf2ang : extracts backbone angles from a cx trajectory file
-# xdrf2pdb-m : converts a selected trajectory of a MREMD run dumpend into a cx file to PDB format
-#
-# xdrf2pdb1 : converts conformation(s) selected from a wham post-processing run into PDB format
-# xdrf2x1 : converts conformation(s) selected from a wham post-processing run into raw (x) format.
-#
-# 9/23/2010 A. Liwo
-
-FC=gfortran
-
-BINDIR = ../../../bin
-
-#OPT = -fast
-OPT =
-
-FFLAGS = -c ${OPT}
-
-CPPFLAGS = -DNEWUNRES
-
-M4 = m4
-M4FILE = underscore.m4
-
-.SUFFIXES: .F
-.F.o:
- ${FC} ${FFLAGS} ${CPPFLAGS} $*.F
-.c.o:
- ${CC} -c ${CPPFLAGS} $*.c
-
-all:xdrf2pdb xdrf2pdb-m
-
-xdrf2pdb: xdrf2pdb.o geomout.o misc.o rescode.o nazwy.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2pdb xdrf2pdb.o geomout.o rescode.o misc.o nazwy.o xdrf/libxdrf.a
-
-xdrf2pdb-m: xdrf2pdb-m.o geomout.o misc.o rescode.o nazwy.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2pdb-m xdrf2pdb-m.o geomout.o rescode.o misc.o nazwy.o xdrf/libxdrf.a
-
-xdrf2pdb1: xdrf2pdb1.o geomout.o misc.o rescode.o nazwy.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2pdb1 xdrf2pdb1.o geomout.o rescode.o misc.o nazwy.o xdrf/libxdrf.a
-
-xdrf2x: xdrf2x.o xdrf/libxdrf.a
- ${FC} -o xdrf2x xdrf2x.o xdrf/libxdrf.a
-
-xdrf2x1: xdrf2x1.o xdrf/libxdrf.a
- ${FC} -o xdrf2x1 xdrf2x1.o xdrf/libxdrf.a
-
-xdrf2ang: xdrf2ang.o misc.o rescode.o nazwy.o intcor.o arcos.o xdrf/libxdrf.a
- ${FC} -Bstatic -o ${BINDIR}/xdrf2ang xdrf2ang.o rescode.o \
- misc.o nazwy.o intcor.o arcos.o xdrf/libxdrf.a
-
-clean:
- rm -f *.o
--- /dev/null
+Makefile_ifort
\ No newline at end of file
+++ /dev/null
-
-
-int ftocstr(ds, dl, ss, sl)
- char *ds, *ss; /* dst, src ptrs */
- int dl; /* dst max len */
- int sl; /* src len */
-{
- char *p;
-
- for (p = ss + sl; --p >= ss && *p == ' '; ) ;
- sl = p - ss + 1;
- dl--;
- ds[0] = 0;
- if (sl > dl)
- return 1;
- while (sl--)
- (*ds++ = *ss++);
- *ds = '\0';
- return 0;
-}
-
-
-int ctofstr(ds, dl, ss)
- char *ds; /* dest space */
- int dl; /* max dest length */
- char *ss; /* src string (0-term) */
-{
- while (dl && *ss) {
- *ds++ = *ss++;
- dl--;
- }
- while (dl--)
- *ds++ = ' ';
- return 0;
-}
+++ /dev/null
-# This make file is part of the xdrf package.
-#
-# (C) 1995 Frans van Hoesel, hoesel@chem.rug.nl
-#
-# 2006 modified by Cezary Czaplewski
-
-# Set C compiler and flags for ARCH
-CC = gcc
-CFLAGS = -O
-
-M4 = m4
-M4FILE = underscore.m4
-
-libxdrf.a: libxdrf.o ftocstr.o
- ar cr libxdrf.a $?
-
-clean:
- rm -f libxdrf.o ftocstr.o libxdrf.a
-
-ftocstr.o: ftocstr.c
- $(CC) $(CFLAGS) -c ftocstr.c
-
-libxdrf.o: libxdrf.m4 $(M4FILE)
- $(M4) $(M4FILE) libxdrf.m4 > libxdrf.c
- $(CC) $(CFLAGS) -c libxdrf.c
- rm -f libxdrf.c
-
+++ /dev/null
-# This make file is part of the xdrf package.
-#
-# (C) 1995 Frans van Hoesel, hoesel@chem.rug.nl
-#
-# 2006 modified by Cezary Czaplewski
-
-# Set C compiler and flags for ARCH
-BGLSYS = /bgl/BlueLight/ppcfloor/bglsys
-
-CC = /usr/bin/blrts_xlc
-CPPC = /usr/bin/blrts_xlc
-
-CFLAGS= -O2 -I$(BGLSYS)/include -L$(BGLSYS)/lib -qarch=440d -qtune=440
-
-M4 = m4
-M4FILE = RS6K.m4
-
-libxdrf.a: libxdrf.o ftocstr.o xdr_array.o xdr.o xdr_float.o xdr_stdio.o
- ar cr libxdrf.a $?
-
-clean:
- rm -f *.o libxdrf.a
-
-ftocstr.o: ftocstr.c
- $(CC) $(CFLAGS) -c ftocstr.c
-
-libxdrf.o: libxdrf.m4 $(M4FILE)
- $(M4) $(M4FILE) libxdrf.m4 > libxdrf.c
- $(CC) $(CFLAGS) -c libxdrf.c
-# rm -f libxdrf.c
-
+++ /dev/null
-# This make file is part of the xdrf package.
-#
-# (C) 1995 Frans van Hoesel, hoesel@chem.rug.nl
-#
-# 2006 modified by Cezary Czaplewski
-
-# Set C compiler and flags for ARCH
-CC = cc
-CFLAGS = -O
-
-M4 = m4
-M4FILE = underscore.m4
-
-libxdrf.a: libxdrf.o ftocstr.o
- ar cr libxdrf.a $?
-
-clean:
- rm -f libxdrf.o ftocstr.o libxdrf.a
-
-ftocstr.o: ftocstr.c
- $(CC) $(CFLAGS) -c ftocstr.c
-
-libxdrf.o: libxdrf.m4 $(M4FILE)
- $(M4) $(M4FILE) libxdrf.m4 > libxdrf.c
- $(CC) $(CFLAGS) -c libxdrf.c
- rm -f libxdrf.c
-
+++ /dev/null
-divert(-1)
-undefine(`len')
-#
-# do nothing special to FORTRAN function names
-#
-define(`FUNCTION',`$1')
-#
-# FORTRAN character strings are passed as follows:
-# a pointer to the base of the string is passed in the normal
-# argument list, and the length is passed by value as an extra
-# argument, after all of the other arguments.
-#
-define(`ARGS',`($1`'undivert(1))')
-define(`SAVE',`divert(1)$1`'divert(0)')
-define(`STRING_ARG',`$1_ptr`'SAVE(`, $1_len')')
-define(`STRING_ARG_DECL',`char * $1_ptr; int $1_len')
-define(`STRING_LEN',`$1_len')
-define(`STRING_PTR',`$1_ptr')
-divert(0)
-
+++ /dev/null
-
-
-int ftocstr(ds, dl, ss, sl)
- char *ds, *ss; /* dst, src ptrs */
- int dl; /* dst max len */
- int sl; /* src len */
-{
- char *p;
-
- for (p = ss + sl; --p >= ss && *p == ' '; ) ;
- sl = p - ss + 1;
- dl--;
- ds[0] = 0;
- if (sl > dl)
- return 1;
- while (sl--)
- (*ds++ = *ss++);
- *ds = '\0';
- return 0;
-}
-
-
-int ctofstr(ds, dl, ss)
- char *ds; /* dest space */
- int dl; /* max dest length */
- char *ss; /* src string (0-term) */
-{
- while (dl && *ss) {
- *ds++ = *ss++;
- dl--;
- }
- while (dl--)
- *ds++ = ' ';
- return 0;
-}
+++ /dev/null
-/*____________________________________________________________________________
- |
- | libxdrf - portable fortran interface to xdr. some xdr routines
- | are C routines for compressed coordinates
- |
- | version 1.1
- |
- | This collection of routines is intended to write and read
- | data in a portable way to a file, so data written on one type
- | of machine can be read back on a different type.
- |
- | all fortran routines use an integer 'xdrid', which is an id to the
- | current xdr file, and is set by xdrfopen.
- | most routines have in integer 'ret' which is the return value.
- | The value of 'ret' is zero on failure, and most of the time one
- | on succes.
- |
- | There are three routines useful for C users:
- | xdropen(), xdrclose(), xdr3dfcoord().
- | The first two replace xdrstdio_create and xdr_destroy, and *must* be
- | used when you plan to use xdr3dfcoord(). (they are also a bit
- | easier to interface). For writing data other than compressed coordinates
- | you should use the standard C xdr routines (see xdr man page)
- |
- | xdrfopen(xdrid, filename, mode, ret)
- | character *(*) filename
- | character *(*) mode
- |
- | this will open the file with the given filename (string)
- | and the given mode, it returns an id in xdrid, which is
- | to be used in all other calls to xdrf routines.
- | mode is 'w' to create, or update an file, for all other
- | values of mode the file is opened for reading
- |
- | you need to call xdrfclose to flush the output and close
- | the file.
- | Note that you should not use xdrstdio_create, which comes with the
- | standard xdr library
- |
- | xdrfclose(xdrid, ret)
- | flush the data to the file, and closes the file;
- | You should not use xdr_destroy (which comes standard with
- | the xdr libraries.
- |
- | xdrfbool(xdrid, bp, ret)
- | integer pb
- |
- | This filter produces values of either 1 or 0
- |
- | xdrfchar(xdrid, cp, ret)
- | character cp
- |
- | filter that translate between characters and their xdr representation
- | Note that the characters in not compressed and occupies 4 bytes.
- |
- | xdrfdouble(xdrid, dp, ret)
- | double dp
- |
- | read/write a double.
- |
- | xdrffloat(xdrid, fp, ret)
- | float fp
- |
- | read/write a float.
- |
- | xdrfint(xdrid, ip, ret)
- | integer ip
- |
- | read/write integer.
- |
- | xdrflong(xdrid, lp, ret)
- | integer lp
- |
- | this routine has a possible portablility problem due to 64 bits longs.
- |
- | xdrfshort(xdrid, sp, ret)
- | integer *2 sp
- |
- | xdrfstring(xdrid, sp, maxsize, ret)
- | character *(*)
- | integer maxsize
- |
- | read/write a string, with maximum length given by maxsize
- |
- | xdrfwrapstring(xdris, sp, ret)
- | character *(*)
- |
- | read/write a string (it is the same as xdrfstring accept that it finds
- | the stringlength itself.
- |
- | xdrfvector(xdrid, cp, size, xdrfproc, ret)
- | character *(*)
- | integer size
- | external xdrfproc
- |
- | read/write an array pointed to by cp, with number of elements
- | defined by 'size'. the routine 'xdrfproc' is the name
- | of one of the above routines to read/write data (like xdrfdouble)
- | In contrast with the c-version you don't need to specify the
- | byte size of an element.
- | xdrfstring is not allowed here (it is in the c version)
- |
- | xdrf3dfcoord(xdrid, fp, size, precision, ret)
- | real (*) fp
- | real precision
- | integer size
- |
- | this is *NOT* a standard xdr routine. I named it this way, because
- | it invites people to use the other xdr routines.
- | It is introduced to store specifically 3d coordinates of molecules
- | (as found in molecular dynamics) and it writes it in a compressed way.
- | It starts by multiplying all numbers by precision and
- | rounding the result to integer. effectively converting
- | all floating point numbers to fixed point.
- | it uses an algorithm for compression that is optimized for
- | molecular data, but could be used for other 3d coordinates
- | as well. There is subtantial overhead involved, so call this
- | routine only if you have a large number of coordinates to read/write
- |
- | ________________________________________________________________________
- |
- | Below are the routines to be used by C programmers. Use the 'normal'
- | xdr routines to write integers, floats, etc (see man xdr)
- |
- | int xdropen(XDR *xdrs, const char *filename, const char *type)
- | This will open the file with the given filename and the
- | given mode. You should pass it an allocated XDR struct
- | in xdrs, to be used in all other calls to xdr routines.
- | Mode is 'w' to create, or update an file, and for all
- | other values of mode the file is opened for reading.
- | You need to call xdrclose to flush the output and close
- | the file.
- |
- | Note that you should not use xdrstdio_create, which
- | comes with the standard xdr library.
- |
- | int xdrclose(XDR *xdrs)
- | Flush the data to the file, and close the file;
- | You should not use xdr_destroy (which comes standard
- | with the xdr libraries).
- |
- | int xdr3dfcoord(XDR *xdrs, float *fp, int *size, float *precision)
- | This is \fInot\fR a standard xdr routine. I named it this
- | way, because it invites people to use the other xdr
- | routines.
- |
- | (c) 1995 Frans van Hoesel, hoesel@chem.rug.nl
-*/
-
-
-#include <limits.h>
-#include <malloc.h>
-#include <math.h>
-/* #include <rpc/rpc.h>
-#include <rpc/xdr.h> */
-#include "xdr.h"
-#include <stdio.h>
-#include <stdlib.h>
-#include "xdrf.h"
-
-int ftocstr(char *, int, char *, int);
-int ctofstr(char *, int, char *);
-
-#define MAXID 20
-static FILE *xdrfiles[MAXID];
-static XDR *xdridptr[MAXID];
-static char xdrmodes[MAXID];
-static unsigned int cnt;
-
-typedef void (* FUNCTION(xdrfproc)) (int *, void *, int *);
-
-void
-FUNCTION(xdrfbool) ARGS(`xdrid, pb, ret')
-int *xdrid, *ret;
-int *pb;
-{
- *ret = xdr_bool(xdridptr[*xdrid], (bool_t *) pb);
- cnt += sizeof(int);
-}
-
-void
-FUNCTION(xdrfchar) ARGS(`xdrid, cp, ret')
-int *xdrid, *ret;
-char *cp;
-{
- *ret = xdr_char(xdridptr[*xdrid], cp);
- cnt += sizeof(char);
-}
-
-void
-FUNCTION(xdrfdouble) ARGS(`xdrid, dp, ret')
-int *xdrid, *ret;
-double *dp;
-{
- *ret = xdr_double(xdridptr[*xdrid], dp);
- cnt += sizeof(double);
-}
-
-void
-FUNCTION(xdrffloat) ARGS(`xdrid, fp, ret')
-int *xdrid, *ret;
-float *fp;
-{
- *ret = xdr_float(xdridptr[*xdrid], fp);
- cnt += sizeof(float);
-}
-
-void
-FUNCTION(xdrfint) ARGS(`xdrid, ip, ret')
-int *xdrid, *ret;
-int *ip;
-{
- *ret = xdr_int(xdridptr[*xdrid], ip);
- cnt += sizeof(int);
-}
-
-void
-FUNCTION(xdrflong) ARGS(`xdrid, lp, ret')
-int *xdrid, *ret;
-long *lp;
-{
- *ret = xdr_long(xdridptr[*xdrid], lp);
- cnt += sizeof(long);
-}
-
-void
-FUNCTION(xdrfshort) ARGS(`xdrid, sp, ret')
-int *xdrid, *ret;
-short *sp;
-{
- *ret = xdr_short(xdridptr[*xdrid], sp);
- cnt += sizeof(sp);
-}
-
-void
-FUNCTION(xdrfuchar) ARGS(`xdrid, ucp, ret')
-int *xdrid, *ret;
-char *ucp;
-{
- *ret = xdr_u_char(xdridptr[*xdrid], ucp);
- cnt += sizeof(char);
-}
-
-void
-FUNCTION(xdrfulong) ARGS(`xdrid, ulp, ret')
-int *xdrid, *ret;
-unsigned long *ulp;
-{
- *ret = xdr_u_long(xdridptr[*xdrid], ulp);
- cnt += sizeof(unsigned long);
-}
-
-void
-FUNCTION(xdrfushort) ARGS(`xdrid, usp, ret')
-int *xdrid, *ret;
-unsigned short *usp;
-{
- *ret = xdr_u_short(xdridptr[*xdrid], usp);
- cnt += sizeof(unsigned short);
-}
-
-void
-FUNCTION(xdrf3dfcoord) ARGS(`xdrid, fp, size, precision, ret')
-int *xdrid, *ret;
-float *fp;
-int *size;
-float *precision;
-{
- *ret = xdr3dfcoord(xdridptr[*xdrid], fp, size, precision);
-}
-
-void
-FUNCTION(xdrfstring) ARGS(`xdrid, STRING_ARG(sp), maxsize, ret')
-int *xdrid, *ret;
-STRING_ARG_DECL(sp);
-int *maxsize;
-{
- char *tsp;
-
- tsp = (char*) malloc(((STRING_LEN(sp)) + 1) * sizeof(char));
- if (tsp == NULL) {
- *ret = -1;
- return;
- }
- if (ftocstr(tsp, *maxsize+1, STRING_PTR(sp), STRING_LEN(sp))) {
- *ret = -1;
- free(tsp);
- return;
- }
- *ret = xdr_string(xdridptr[*xdrid], (char **) &tsp, (u_int) *maxsize);
- ctofstr( STRING_PTR(sp), STRING_LEN(sp), tsp);
- cnt += *maxsize;
- free(tsp);
-}
-
-void
-FUNCTION(xdrfwrapstring) ARGS(`xdrid, STRING_ARG(sp), ret')
-int *xdrid, *ret;
-STRING_ARG_DECL(sp);
-{
- char *tsp;
- int maxsize;
- maxsize = (STRING_LEN(sp)) + 1;
- tsp = (char*) malloc(maxsize * sizeof(char));
- if (tsp == NULL) {
- *ret = -1;
- return;
- }
- if (ftocstr(tsp, maxsize, STRING_PTR(sp), STRING_LEN(sp))) {
- *ret = -1;
- free(tsp);
- return;
- }
- *ret = xdr_string(xdridptr[*xdrid], (char **) &tsp, (u_int)maxsize);
- ctofstr( STRING_PTR(sp), STRING_LEN(sp), tsp);
- cnt += maxsize;
- free(tsp);
-}
-
-void
-FUNCTION(xdrfopaque) ARGS(`xdrid, cp, ccnt, ret')
-int *xdrid, *ret;
-caddr_t *cp;
-int *ccnt;
-{
- *ret = xdr_opaque(xdridptr[*xdrid], (caddr_t)*cp, (u_int)*ccnt);
- cnt += *ccnt;
-}
-
-void
-FUNCTION(xdrfsetpos) ARGS(`xdrid, pos, ret')
-int *xdrid, *ret;
-int *pos;
-{
- *ret = xdr_setpos(xdridptr[*xdrid], (u_int) *pos);
-}
-
-void
-FUNCTION(xdrf) ARGS(`xdrid, pos')
-int *xdrid, *pos;
-{
- *pos = xdr_getpos(xdridptr[*xdrid]);
-}
-
-void
-FUNCTION(xdrfvector) ARGS(`xdrid, cp, size, elproc, ret')
-int *xdrid, *ret;
-char *cp;
-int *size;
-FUNCTION(xdrfproc) elproc;
-{
- int lcnt;
- cnt = 0;
- for (lcnt = 0; lcnt < *size; lcnt++) {
- elproc(xdrid, (cp+cnt) , ret);
- }
-}
-
-
-void
-FUNCTION(xdrfclose) ARGS(`xdrid, ret')
-int *xdrid;
-int *ret;
-{
- *ret = xdrclose(xdridptr[*xdrid]);
- cnt = 0;
-}
-
-void
-FUNCTION(xdrfopen) ARGS(`xdrid, STRING_ARG(fp), STRING_ARG(mode), ret')
-int *xdrid;
-STRING_ARG_DECL(fp);
-STRING_ARG_DECL(mode);
-int *ret;
-{
- char fname[512];
- char fmode[3];
-
- if (ftocstr(fname, sizeof(fname), STRING_PTR(fp), STRING_LEN(fp))) {
- *ret = 0;
- }
- if (ftocstr(fmode, sizeof(fmode), STRING_PTR(mode),
- STRING_LEN(mode))) {
- *ret = 0;
- }
-
- *xdrid = xdropen(NULL, fname, fmode);
- if (*xdrid == 0)
- *ret = 0;
- else
- *ret = 1;
-}
-
-/*___________________________________________________________________________
- |
- | what follows are the C routines for opening, closing xdr streams
- | and the routine to read/write compressed coordinates together
- | with some routines to assist in this task (those are marked
- | static and cannot be called from user programs)
-*/
-#define MAXABS INT_MAX-2
-
-#ifndef MIN
-#define MIN(x,y) ((x) < (y) ? (x):(y))
-#endif
-#ifndef MAX
-#define MAX(x,y) ((x) > (y) ? (x):(y))
-#endif
-#ifndef SQR
-#define SQR(x) ((x)*(x))
-#endif
-static int magicints[] = {
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 8, 10, 12, 16, 20, 25, 32, 40, 50, 64,
- 80, 101, 128, 161, 203, 256, 322, 406, 512, 645,
- 812, 1024, 1290, 1625, 2048, 2580, 3250, 4096, 5060, 6501,
- 8192, 10321, 13003, 16384, 20642, 26007, 32768, 41285, 52015, 65536,
- 82570, 104031, 131072, 165140, 208063, 262144, 330280, 416127, 524287, 660561,
- 832255, 1048576, 1321122, 1664510, 2097152, 2642245, 3329021, 4194304, 5284491, 6658042,
- 8388607, 10568983, 13316085, 16777216 };
-
-#define FIRSTIDX 9
-/* note that magicints[FIRSTIDX-1] == 0 */
-#define LASTIDX (sizeof(magicints) / sizeof(*magicints))
-
-
-/*__________________________________________________________________________
- |
- | xdropen - open xdr file
- |
- | This versions differs from xdrstdio_create, because I need to know
- | the state of the file (read or write) so I can use xdr3dfcoord
- | in eigther read or write mode, and the file descriptor
- | so I can close the file (something xdr_destroy doesn't do).
- |
-*/
-
-int xdropen(XDR *xdrs, const char *filename, const char *type) {
- static int init_done = 0;
- enum xdr_op lmode;
- const char *type1;
- int xdrid;
-
- if (init_done == 0) {
- for (xdrid = 1; xdrid < MAXID; xdrid++) {
- xdridptr[xdrid] = NULL;
- }
- init_done = 1;
- }
- xdrid = 1;
- while (xdrid < MAXID && xdridptr[xdrid] != NULL) {
- xdrid++;
- }
- if (xdrid == MAXID) {
- return 0;
- }
- if (*type == 'w' || *type == 'W') {
- type = "w+";
- type1 = "w+";
- lmode = XDR_ENCODE;
- } else if (*type == 'a' || *type == 'A') {
- type = "w+";
- type1 = "a+";
- lmode = XDR_ENCODE;
- } else {
- type = "r";
- type1 = "r";
- lmode = XDR_DECODE;
- }
- xdrfiles[xdrid] = fopen(filename, type1);
- if (xdrfiles[xdrid] == NULL) {
- xdrs = NULL;
- return 0;
- }
- xdrmodes[xdrid] = *type;
- /* next test isn't usefull in the case of C language
- * but is used for the Fortran interface
- * (C users are expected to pass the address of an already allocated
- * XDR staructure)
- */
- if (xdrs == NULL) {
- xdridptr[xdrid] = (XDR *) malloc(sizeof(XDR));
- xdrstdio_create(xdridptr[xdrid], xdrfiles[xdrid], lmode);
- } else {
- xdridptr[xdrid] = xdrs;
- xdrstdio_create(xdrs, xdrfiles[xdrid], lmode);
- }
- return xdrid;
-}
-
-/*_________________________________________________________________________
- |
- | xdrclose - close a xdr file
- |
- | This will flush the xdr buffers, and destroy the xdr stream.
- | It also closes the associated file descriptor (this is *not*
- | done by xdr_destroy).
- |
-*/
-
-int xdrclose(XDR *xdrs) {
- int xdrid;
-
- if (xdrs == NULL) {
- fprintf(stderr, "xdrclose: passed a NULL pointer\n");
- exit(1);
- }
- for (xdrid = 1; xdrid < MAXID; xdrid++) {
- if (xdridptr[xdrid] == xdrs) {
-
- xdr_destroy(xdrs);
- fclose(xdrfiles[xdrid]);
- xdridptr[xdrid] = NULL;
- return 1;
- }
- }
- fprintf(stderr, "xdrclose: no such open xdr file\n");
- exit(1);
-
-}
-
-/*____________________________________________________________________________
- |
- | sendbits - encode num into buf using the specified number of bits
- |
- | This routines appends the value of num to the bits already present in
- | the array buf. You need to give it the number of bits to use and you
- | better make sure that this number of bits is enough to hold the value
- | Also num must be positive.
- |
-*/
-
-static void sendbits(int buf[], int num_of_bits, int num) {
-
- unsigned int cnt, lastbyte;
- int lastbits;
- unsigned char * cbuf;
-
- cbuf = ((unsigned char *)buf) + 3 * sizeof(*buf);
- cnt = (unsigned int) buf[0];
- lastbits = buf[1];
- lastbyte =(unsigned int) buf[2];
- while (num_of_bits >= 8) {
- lastbyte = (lastbyte << 8) | ((num >> (num_of_bits -8)) /* & 0xff*/);
- cbuf[cnt++] = lastbyte >> lastbits;
- num_of_bits -= 8;
- }
- if (num_of_bits > 0) {
- lastbyte = (lastbyte << num_of_bits) | num;
- lastbits += num_of_bits;
- if (lastbits >= 8) {
- lastbits -= 8;
- cbuf[cnt++] = lastbyte >> lastbits;
- }
- }
- buf[0] = cnt;
- buf[1] = lastbits;
- buf[2] = lastbyte;
- if (lastbits>0) {
- cbuf[cnt] = lastbyte << (8 - lastbits);
- }
-}
-
-/*_________________________________________________________________________
- |
- | sizeofint - calculate bitsize of an integer
- |
- | return the number of bits needed to store an integer with given max size
- |
-*/
-
-static int sizeofint(const int size) {
- unsigned int num = 1;
- int num_of_bits = 0;
-
- while (size >= num && num_of_bits < 32) {
- num_of_bits++;
- num <<= 1;
- }
- return num_of_bits;
-}
-
-/*___________________________________________________________________________
- |
- | sizeofints - calculate 'bitsize' of compressed ints
- |
- | given the number of small unsigned integers and the maximum value
- | return the number of bits needed to read or write them with the
- | routines receiveints and sendints. You need this parameter when
- | calling these routines. Note that for many calls I can use
- | the variable 'smallidx' which is exactly the number of bits, and
- | So I don't need to call 'sizeofints for those calls.
-*/
-
-static int sizeofints( const int num_of_ints, unsigned int sizes[]) {
- int i, num;
- unsigned int num_of_bytes, num_of_bits, bytes[32], bytecnt, tmp;
- num_of_bytes = 1;
- bytes[0] = 1;
- num_of_bits = 0;
- for (i=0; i < num_of_ints; i++) {
- tmp = 0;
- for (bytecnt = 0; bytecnt < num_of_bytes; bytecnt++) {
- tmp = bytes[bytecnt] * sizes[i] + tmp;
- bytes[bytecnt] = tmp & 0xff;
- tmp >>= 8;
- }
- while (tmp != 0) {
- bytes[bytecnt++] = tmp & 0xff;
- tmp >>= 8;
- }
- num_of_bytes = bytecnt;
- }
- num = 1;
- num_of_bytes--;
- while (bytes[num_of_bytes] >= num) {
- num_of_bits++;
- num *= 2;
- }
- return num_of_bits + num_of_bytes * 8;
-
-}
-
-/*____________________________________________________________________________
- |
- | sendints - send a small set of small integers in compressed format
- |
- | this routine is used internally by xdr3dfcoord, to send a set of
- | small integers to the buffer.
- | Multiplication with fixed (specified maximum ) sizes is used to get
- | to one big, multibyte integer. Allthough the routine could be
- | modified to handle sizes bigger than 16777216, or more than just
- | a few integers, this is not done, because the gain in compression
- | isn't worth the effort. Note that overflowing the multiplication
- | or the byte buffer (32 bytes) is unchecked and causes bad results.
- |
- */
-
-static void sendints(int buf[], const int num_of_ints, const int num_of_bits,
- unsigned int sizes[], unsigned int nums[]) {
-
- int i;
- unsigned int bytes[32], num_of_bytes, bytecnt, tmp;
-
- tmp = nums[0];
- num_of_bytes = 0;
- do {
- bytes[num_of_bytes++] = tmp & 0xff;
- tmp >>= 8;
- } while (tmp != 0);
-
- for (i = 1; i < num_of_ints; i++) {
- if (nums[i] >= sizes[i]) {
- fprintf(stderr,"major breakdown in sendints num %d doesn't "
- "match size %d\n", nums[i], sizes[i]);
- exit(1);
- }
- /* use one step multiply */
- tmp = nums[i];
- for (bytecnt = 0; bytecnt < num_of_bytes; bytecnt++) {
- tmp = bytes[bytecnt] * sizes[i] + tmp;
- bytes[bytecnt] = tmp & 0xff;
- tmp >>= 8;
- }
- while (tmp != 0) {
- bytes[bytecnt++] = tmp & 0xff;
- tmp >>= 8;
- }
- num_of_bytes = bytecnt;
- }
- if (num_of_bits >= num_of_bytes * 8) {
- for (i = 0; i < num_of_bytes; i++) {
- sendbits(buf, 8, bytes[i]);
- }
- sendbits(buf, num_of_bits - num_of_bytes * 8, 0);
- } else {
- for (i = 0; i < num_of_bytes-1; i++) {
- sendbits(buf, 8, bytes[i]);
- }
- sendbits(buf, num_of_bits- (num_of_bytes -1) * 8, bytes[i]);
- }
-}
-
-
-/*___________________________________________________________________________
- |
- | receivebits - decode number from buf using specified number of bits
- |
- | extract the number of bits from the array buf and construct an integer
- | from it. Return that value.
- |
-*/
-
-static int receivebits(int buf[], int num_of_bits) {
-
- int cnt, num;
- unsigned int lastbits, lastbyte;
- unsigned char * cbuf;
- int mask = (1 << num_of_bits) -1;
-
- cbuf = ((unsigned char *)buf) + 3 * sizeof(*buf);
- cnt = buf[0];
- lastbits = (unsigned int) buf[1];
- lastbyte = (unsigned int) buf[2];
-
- num = 0;
- while (num_of_bits >= 8) {
- lastbyte = ( lastbyte << 8 ) | cbuf[cnt++];
- num |= (lastbyte >> lastbits) << (num_of_bits - 8);
- num_of_bits -=8;
- }
- if (num_of_bits > 0) {
- if (lastbits < num_of_bits) {
- lastbits += 8;
- lastbyte = (lastbyte << 8) | cbuf[cnt++];
- }
- lastbits -= num_of_bits;
- num |= (lastbyte >> lastbits) & ((1 << num_of_bits) -1);
- }
- num &= mask;
- buf[0] = cnt;
- buf[1] = lastbits;
- buf[2] = lastbyte;
- return num;
-}
-
-/*____________________________________________________________________________
- |
- | receiveints - decode 'small' integers from the buf array
- |
- | this routine is the inverse from sendints() and decodes the small integers
- | written to buf by calculating the remainder and doing divisions with
- | the given sizes[]. You need to specify the total number of bits to be
- | used from buf in num_of_bits.
- |
-*/
-
-static void receiveints(int buf[], const int num_of_ints, int num_of_bits,
- unsigned int sizes[], int nums[]) {
- int bytes[32];
- int i, j, num_of_bytes, p, num;
-
- bytes[1] = bytes[2] = bytes[3] = 0;
- num_of_bytes = 0;
- while (num_of_bits > 8) {
- bytes[num_of_bytes++] = receivebits(buf, 8);
- num_of_bits -= 8;
- }
- if (num_of_bits > 0) {
- bytes[num_of_bytes++] = receivebits(buf, num_of_bits);
- }
- for (i = num_of_ints-1; i > 0; i--) {
- num = 0;
- for (j = num_of_bytes-1; j >=0; j--) {
- num = (num << 8) | bytes[j];
- p = num / sizes[i];
- bytes[j] = p;
- num = num - p * sizes[i];
- }
- nums[i] = num;
- }
- nums[0] = bytes[0] | (bytes[1] << 8) | (bytes[2] << 16) | (bytes[3] << 24);
-}
-
-/*____________________________________________________________________________
- |
- | xdr3dfcoord - read or write compressed 3d coordinates to xdr file.
- |
- | this routine reads or writes (depending on how you opened the file with
- | xdropen() ) a large number of 3d coordinates (stored in *fp).
- | The number of coordinates triplets to write is given by *size. On
- | read this number may be zero, in which case it reads as many as were written
- | or it may specify the number if triplets to read (which should match the
- | number written).
- | Compression is achieved by first converting all floating numbers to integer
- | using multiplication by *precision and rounding to the nearest integer.
- | Then the minimum and maximum value are calculated to determine the range.
- | The limited range of integers so found, is used to compress the coordinates.
- | In addition the differences between succesive coordinates is calculated.
- | If the difference happens to be 'small' then only the difference is saved,
- | compressing the data even more. The notion of 'small' is changed dynamically
- | and is enlarged or reduced whenever needed or possible.
- | Extra compression is achieved in the case of GROMOS and coordinates of
- | water molecules. GROMOS first writes out the Oxygen position, followed by
- | the two hydrogens. In order to make the differences smaller (and thereby
- | compression the data better) the order is changed into first one hydrogen
- | then the oxygen, followed by the other hydrogen. This is rather special, but
- | it shouldn't harm in the general case.
- |
- */
-
-int xdr3dfcoord(XDR *xdrs, float *fp, int *size, float *precision) {
-
-
- static int *ip = NULL;
- static int oldsize;
- static int *buf;
-
- int minint[3], maxint[3], mindiff, *lip, diff;
- int lint1, lint2, lint3, oldlint1, oldlint2, oldlint3, smallidx;
- int minidx, maxidx;
- unsigned sizeint[3], sizesmall[3], bitsizeint[3], size3, *luip;
- int flag, k;
- int small, smaller, larger, i, is_small, is_smaller, run, prevrun;
- float *lfp, lf;
- int tmp, *thiscoord, prevcoord[3];
- unsigned int tmpcoord[30];
-
- int bufsize, xdrid, lsize;
- unsigned int bitsize;
- float inv_precision;
- int errval = 1;
-
- /* find out if xdrs is opened for reading or for writing */
- xdrid = 0;
- while (xdridptr[xdrid] != xdrs) {
- xdrid++;
- if (xdrid >= MAXID) {
- fprintf(stderr, "xdr error. no open xdr stream\n");
- exit (1);
- }
- }
- if (xdrmodes[xdrid] == 'w') {
-
- /* xdrs is open for writing */
-
- if (xdr_int(xdrs, size) == 0)
- return 0;
- size3 = *size * 3;
- /* when the number of coordinates is small, don't try to compress; just
- * write them as floats using xdr_vector
- */
- if (*size <= 9 ) {
- return (xdr_vector(xdrs, (char *) fp, size3, sizeof(*fp),
- (xdrproc_t)xdr_float));
- }
-
- xdr_float(xdrs, precision);
- if (ip == NULL) {
- ip = (int *)malloc(size3 * sizeof(*ip));
- if (ip == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- bufsize = size3 * 1.2;
- buf = (int *)malloc(bufsize * sizeof(*buf));
- if (buf == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- oldsize = *size;
- } else if (*size > oldsize) {
- ip = (int *)realloc(ip, size3 * sizeof(*ip));
- if (ip == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- bufsize = size3 * 1.2;
- buf = (int *)realloc(buf, bufsize * sizeof(*buf));
- if (buf == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- oldsize = *size;
- }
- /* buf[0-2] are special and do not contain actual data */
- buf[0] = buf[1] = buf[2] = 0;
- minint[0] = minint[1] = minint[2] = INT_MAX;
- maxint[0] = maxint[1] = maxint[2] = INT_MIN;
- prevrun = -1;
- lfp = fp;
- lip = ip;
- mindiff = INT_MAX;
- oldlint1 = oldlint2 = oldlint3 = 0;
- while(lfp < fp + size3 ) {
- /* find nearest integer */
- if (*lfp >= 0.0)
- lf = *lfp * *precision + 0.5;
- else
- lf = *lfp * *precision - 0.5;
- if (fabs(lf) > MAXABS) {
- /* scaling would cause overflow */
- errval = 0;
- }
- lint1 = lf;
- if (lint1 < minint[0]) minint[0] = lint1;
- if (lint1 > maxint[0]) maxint[0] = lint1;
- *lip++ = lint1;
- lfp++;
- if (*lfp >= 0.0)
- lf = *lfp * *precision + 0.5;
- else
- lf = *lfp * *precision - 0.5;
- if (fabs(lf) > MAXABS) {
- /* scaling would cause overflow */
- errval = 0;
- }
- lint2 = lf;
- if (lint2 < minint[1]) minint[1] = lint2;
- if (lint2 > maxint[1]) maxint[1] = lint2;
- *lip++ = lint2;
- lfp++;
- if (*lfp >= 0.0)
- lf = *lfp * *precision + 0.5;
- else
- lf = *lfp * *precision - 0.5;
- if (fabs(lf) > MAXABS) {
- /* scaling would cause overflow */
- errval = 0;
- }
- lint3 = lf;
- if (lint3 < minint[2]) minint[2] = lint3;
- if (lint3 > maxint[2]) maxint[2] = lint3;
- *lip++ = lint3;
- lfp++;
- diff = abs(oldlint1-lint1)+abs(oldlint2-lint2)+abs(oldlint3-lint3);
- if (diff < mindiff && lfp > fp + 3)
- mindiff = diff;
- oldlint1 = lint1;
- oldlint2 = lint2;
- oldlint3 = lint3;
- }
- xdr_int(xdrs, &(minint[0]));
- xdr_int(xdrs, &(minint[1]));
- xdr_int(xdrs, &(minint[2]));
-
- xdr_int(xdrs, &(maxint[0]));
- xdr_int(xdrs, &(maxint[1]));
- xdr_int(xdrs, &(maxint[2]));
-
- if ((float)maxint[0] - (float)minint[0] >= MAXABS ||
- (float)maxint[1] - (float)minint[1] >= MAXABS ||
- (float)maxint[2] - (float)minint[2] >= MAXABS) {
- /* turning value in unsigned by subtracting minint
- * would cause overflow
- */
- errval = 0;
- }
- sizeint[0] = maxint[0] - minint[0]+1;
- sizeint[1] = maxint[1] - minint[1]+1;
- sizeint[2] = maxint[2] - minint[2]+1;
-
- /* check if one of the sizes is to big to be multiplied */
- if ((sizeint[0] | sizeint[1] | sizeint[2] ) > 0xffffff) {
- bitsizeint[0] = sizeofint(sizeint[0]);
- bitsizeint[1] = sizeofint(sizeint[1]);
- bitsizeint[2] = sizeofint(sizeint[2]);
- bitsize = 0; /* flag the use of large sizes */
- } else {
- bitsize = sizeofints(3, sizeint);
- }
- lip = ip;
- luip = (unsigned int *) ip;
- smallidx = FIRSTIDX;
- while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
- smallidx++;
- }
- xdr_int(xdrs, &smallidx);
- maxidx = MIN(LASTIDX, smallidx + 8) ;
- minidx = maxidx - 8; /* often this equal smallidx */
- smaller = magicints[MAX(FIRSTIDX, smallidx-1)] / 2;
- small = magicints[smallidx] / 2;
- sizesmall[0] = sizesmall[1] = sizesmall[2] = magicints[smallidx];
- larger = magicints[maxidx] / 2;
- i = 0;
- while (i < *size) {
- is_small = 0;
- thiscoord = (int *)(luip) + i * 3;
- if (smallidx < maxidx && i >= 1 &&
- abs(thiscoord[0] - prevcoord[0]) < larger &&
- abs(thiscoord[1] - prevcoord[1]) < larger &&
- abs(thiscoord[2] - prevcoord[2]) < larger) {
- is_smaller = 1;
- } else if (smallidx > minidx) {
- is_smaller = -1;
- } else {
- is_smaller = 0;
- }
- if (i + 1 < *size) {
- if (abs(thiscoord[0] - thiscoord[3]) < small &&
- abs(thiscoord[1] - thiscoord[4]) < small &&
- abs(thiscoord[2] - thiscoord[5]) < small) {
- /* interchange first with second atom for better
- * compression of water molecules
- */
- tmp = thiscoord[0]; thiscoord[0] = thiscoord[3];
- thiscoord[3] = tmp;
- tmp = thiscoord[1]; thiscoord[1] = thiscoord[4];
- thiscoord[4] = tmp;
- tmp = thiscoord[2]; thiscoord[2] = thiscoord[5];
- thiscoord[5] = tmp;
- is_small = 1;
- }
-
- }
- tmpcoord[0] = thiscoord[0] - minint[0];
- tmpcoord[1] = thiscoord[1] - minint[1];
- tmpcoord[2] = thiscoord[2] - minint[2];
- if (bitsize == 0) {
- sendbits(buf, bitsizeint[0], tmpcoord[0]);
- sendbits(buf, bitsizeint[1], tmpcoord[1]);
- sendbits(buf, bitsizeint[2], tmpcoord[2]);
- } else {
- sendints(buf, 3, bitsize, sizeint, tmpcoord);
- }
- prevcoord[0] = thiscoord[0];
- prevcoord[1] = thiscoord[1];
- prevcoord[2] = thiscoord[2];
- thiscoord = thiscoord + 3;
- i++;
-
- run = 0;
- if (is_small == 0 && is_smaller == -1)
- is_smaller = 0;
- while (is_small && run < 8*3) {
- if (is_smaller == -1 && (
- SQR(thiscoord[0] - prevcoord[0]) +
- SQR(thiscoord[1] - prevcoord[1]) +
- SQR(thiscoord[2] - prevcoord[2]) >= smaller * smaller)) {
- is_smaller = 0;
- }
-
- tmpcoord[run++] = thiscoord[0] - prevcoord[0] + small;
- tmpcoord[run++] = thiscoord[1] - prevcoord[1] + small;
- tmpcoord[run++] = thiscoord[2] - prevcoord[2] + small;
-
- prevcoord[0] = thiscoord[0];
- prevcoord[1] = thiscoord[1];
- prevcoord[2] = thiscoord[2];
-
- i++;
- thiscoord = thiscoord + 3;
- is_small = 0;
- if (i < *size &&
- abs(thiscoord[0] - prevcoord[0]) < small &&
- abs(thiscoord[1] - prevcoord[1]) < small &&
- abs(thiscoord[2] - prevcoord[2]) < small) {
- is_small = 1;
- }
- }
- if (run != prevrun || is_smaller != 0) {
- prevrun = run;
- sendbits(buf, 1, 1); /* flag the change in run-length */
- sendbits(buf, 5, run+is_smaller+1);
- } else {
- sendbits(buf, 1, 0); /* flag the fact that runlength did not change */
- }
- for (k=0; k < run; k+=3) {
- sendints(buf, 3, smallidx, sizesmall, &tmpcoord[k]);
- }
- if (is_smaller != 0) {
- smallidx += is_smaller;
- if (is_smaller < 0) {
- small = smaller;
- smaller = magicints[smallidx-1] / 2;
- } else {
- smaller = small;
- small = magicints[smallidx] / 2;
- }
- sizesmall[0] = sizesmall[1] = sizesmall[2] = magicints[smallidx];
- }
- }
- if (buf[1] != 0) buf[0]++;;
- xdr_int(xdrs, &(buf[0])); /* buf[0] holds the length in bytes */
- return errval * (xdr_opaque(xdrs, (caddr_t)&(buf[3]), (u_int)buf[0]));
- } else {
-
- /* xdrs is open for reading */
-
- if (xdr_int(xdrs, &lsize) == 0)
- return 0;
- if (*size != 0 && lsize != *size) {
- fprintf(stderr, "wrong number of coordinates in xdr3dfcoor; "
- "%d arg vs %d in file", *size, lsize);
- }
- *size = lsize;
- size3 = *size * 3;
- if (*size <= 9) {
- return (xdr_vector(xdrs, (char *) fp, size3, sizeof(*fp),
- (xdrproc_t)xdr_float));
- }
- xdr_float(xdrs, precision);
- if (ip == NULL) {
- ip = (int *)malloc(size3 * sizeof(*ip));
- if (ip == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- bufsize = size3 * 1.2;
- buf = (int *)malloc(bufsize * sizeof(*buf));
- if (buf == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- oldsize = *size;
- } else if (*size > oldsize) {
- ip = (int *)realloc(ip, size3 * sizeof(*ip));
- if (ip == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- bufsize = size3 * 1.2;
- buf = (int *)realloc(buf, bufsize * sizeof(*buf));
- if (buf == NULL) {
- fprintf(stderr,"malloc failed\n");
- exit(1);
- }
- oldsize = *size;
- }
- buf[0] = buf[1] = buf[2] = 0;
-
- xdr_int(xdrs, &(minint[0]));
- xdr_int(xdrs, &(minint[1]));
- xdr_int(xdrs, &(minint[2]));
-
- xdr_int(xdrs, &(maxint[0]));
- xdr_int(xdrs, &(maxint[1]));
- xdr_int(xdrs, &(maxint[2]));
-
- sizeint[0] = maxint[0] - minint[0]+1;
- sizeint[1] = maxint[1] - minint[1]+1;
- sizeint[2] = maxint[2] - minint[2]+1;
-
- /* check if one of the sizes is to big to be multiplied */
- if ((sizeint[0] | sizeint[1] | sizeint[2] ) > 0xffffff) {
- bitsizeint[0] = sizeofint(sizeint[0]);
- bitsizeint[1] = sizeofint(sizeint[1]);
- bitsizeint[2] = sizeofint(sizeint[2]);
- bitsize = 0; /* flag the use of large sizes */
- } else {
- bitsize = sizeofints(3, sizeint);
- }
-
- xdr_int(xdrs, &smallidx);
- maxidx = MIN(LASTIDX, smallidx + 8) ;
- minidx = maxidx - 8; /* often this equal smallidx */
- smaller = magicints[MAX(FIRSTIDX, smallidx-1)] / 2;
- small = magicints[smallidx] / 2;
- sizesmall[0] = sizesmall[1] = sizesmall[2] = magicints[smallidx] ;
- larger = magicints[maxidx];
-
- /* buf[0] holds the length in bytes */
-
- if (xdr_int(xdrs, &(buf[0])) == 0)
- return 0;
- if (xdr_opaque(xdrs, (caddr_t)&(buf[3]), (u_int)buf[0]) == 0)
- return 0;
- buf[0] = buf[1] = buf[2] = 0;
-
- lfp = fp;
- inv_precision = 1.0 / * precision;
- run = 0;
- i = 0;
- lip = ip;
- while ( i < lsize ) {
- thiscoord = (int *)(lip) + i * 3;
-
- if (bitsize == 0) {
- thiscoord[0] = receivebits(buf, bitsizeint[0]);
- thiscoord[1] = receivebits(buf, bitsizeint[1]);
- thiscoord[2] = receivebits(buf, bitsizeint[2]);
- } else {
- receiveints(buf, 3, bitsize, sizeint, thiscoord);
- }
-
- i++;
- thiscoord[0] += minint[0];
- thiscoord[1] += minint[1];
- thiscoord[2] += minint[2];
-
- prevcoord[0] = thiscoord[0];
- prevcoord[1] = thiscoord[1];
- prevcoord[2] = thiscoord[2];
-
-
- flag = receivebits(buf, 1);
- is_smaller = 0;
- if (flag == 1) {
- run = receivebits(buf, 5);
- is_smaller = run % 3;
- run -= is_smaller;
- is_smaller--;
- }
- if (run > 0) {
- thiscoord += 3;
- for (k = 0; k < run; k+=3) {
- receiveints(buf, 3, smallidx, sizesmall, thiscoord);
- i++;
- thiscoord[0] += prevcoord[0] - small;
- thiscoord[1] += prevcoord[1] - small;
- thiscoord[2] += prevcoord[2] - small;
- if (k == 0) {
- /* interchange first with second atom for better
- * compression of water molecules
- */
- tmp = thiscoord[0]; thiscoord[0] = prevcoord[0];
- prevcoord[0] = tmp;
- tmp = thiscoord[1]; thiscoord[1] = prevcoord[1];
- prevcoord[1] = tmp;
- tmp = thiscoord[2]; thiscoord[2] = prevcoord[2];
- prevcoord[2] = tmp;
- *lfp++ = prevcoord[0] * inv_precision;
- *lfp++ = prevcoord[1] * inv_precision;
- *lfp++ = prevcoord[2] * inv_precision;
- } else {
- prevcoord[0] = thiscoord[0];
- prevcoord[1] = thiscoord[1];
- prevcoord[2] = thiscoord[2];
- }
- *lfp++ = thiscoord[0] * inv_precision;
- *lfp++ = thiscoord[1] * inv_precision;
- *lfp++ = thiscoord[2] * inv_precision;
- }
- } else {
- *lfp++ = thiscoord[0] * inv_precision;
- *lfp++ = thiscoord[1] * inv_precision;
- *lfp++ = thiscoord[2] * inv_precision;
- }
- smallidx += is_smaller;
- if (is_smaller < 0) {
- small = smaller;
- if (smallidx > FIRSTIDX) {
- smaller = magicints[smallidx - 1] /2;
- } else {
- smaller = 0;
- }
- } else if (is_smaller > 0) {
- smaller = small;
- small = magicints[smallidx] / 2;
- }
- sizesmall[0] = sizesmall[1] = sizesmall[2] = magicints[smallidx] ;
- }
- }
- return 1;
-}
-
-
-
+++ /dev/null
-/*
- * Sun RPC is a product of Sun Microsystems, Inc. and is provided for
- * unrestricted use provided that this legend is included on all tape
- * media and as a part of the software program in whole or part. Users
- * may copy or modify Sun RPC without charge, but are not authorized
- * to license or distribute it to anyone else except as part of a product or
- * program developed by the user.
- *
- * SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
- * WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
- *
- * Sun RPC is provided with no support and without any obligation on the
- * part of Sun Microsystems, Inc. to assist in its use, correction,
- * modification or enhancement.
- *
- * SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
- * INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
- * OR ANY PART THEREOF.
- *
- * In no event will Sun Microsystems, Inc. be liable for any lost revenue
- * or profits or other special, indirect and consequential damages, even if
- * Sun has been advised of the possibility of such damages.
- *
- * Sun Microsystems, Inc.
- * 2550 Garcia Avenue
- * Mountain View, California 94043
- */
-/* fixincludes should not add extern "C" to this file */
-/*
- * Rpc additions to <sys/types.h>
- */
-#ifndef _RPC_TYPES_H
-#define _RPC_TYPES_H 1
-
-typedef int bool_t;
-typedef int enum_t;
-/* This needs to be changed to uint32_t in the future */
-typedef unsigned long rpcprog_t;
-typedef unsigned long rpcvers_t;
-typedef unsigned long rpcproc_t;
-typedef unsigned long rpcprot_t;
-typedef unsigned long rpcport_t;
-
-#define __dontcare__ -1
-
-#ifndef FALSE
-# define FALSE (0)
-#endif
-
-#ifndef TRUE
-# define TRUE (1)
-#endif
-
-#ifndef NULL
-# define NULL 0
-#endif
-
-#include <stdlib.h> /* For malloc decl. */
-#define mem_alloc(bsize) malloc(bsize)
-/*
- * XXX: This must not use the second argument, or code in xdr_array.c needs
- * to be modified.
- */
-#define mem_free(ptr, bsize) free(ptr)
-
-#ifndef makedev /* ie, we haven't already included it */
-#include <sys/types.h>
-#endif
-
-#ifndef __u_char_defined
-typedef __u_char u_char;
-typedef __u_short u_short;
-typedef __u_int u_int;
-typedef __u_long u_long;
-typedef __quad_t quad_t;
-typedef __u_quad_t u_quad_t;
-typedef __fsid_t fsid_t;
-# define __u_char_defined
-#endif
-#ifndef __daddr_t_defined
-typedef __daddr_t daddr_t;
-typedef __caddr_t caddr_t;
-# define __daddr_t_defined
-#endif
-
-#include <sys/time.h>
-#include <sys/param.h>
-
-#include <netinet/in.h>
-
-#ifndef INADDR_LOOPBACK
-#define INADDR_LOOPBACK (u_long)0x7F000001
-#endif
-#ifndef MAXHOSTNAMELEN
-#define MAXHOSTNAMELEN 64
-#endif
-
-#endif /* rpc/types.h */
+++ /dev/null
-divert(-1)
-undefine(`len')
-#
-# append an underscore to FORTRAN function names
-#
-define(`FUNCTION',`$1_')
-#
-# FORTRAN character strings are passed as follows:
-# a pointer to the base of the string is passed in the normal
-# argument list, and the length is passed by value as an extra
-# argument, after all of the other arguments.
-#
-define(`ARGS',`($1`'undivert(1))')
-define(`SAVE',`divert(1)$1`'divert(0)')
-define(`STRING_ARG',`$1_ptr`'SAVE(`, $1_len')')
-define(`STRING_ARG_DECL',`char * $1_ptr; int $1_len')
-define(`STRING_LEN',`$1_len')
-define(`STRING_PTR',`$1_ptr')
-divert(0)
+++ /dev/null
-# define INTUSE(name) name
-# define INTDEF(name)
-/* @(#)xdr.c 2.1 88/07/29 4.0 RPCSRC */
-/*
- * Sun RPC is a product of Sun Microsystems, Inc. and is provided for
- * unrestricted use provided that this legend is included on all tape
- * media and as a part of the software program in whole or part. Users
- * may copy or modify Sun RPC without charge, but are not authorized
- * to license or distribute it to anyone else except as part of a product or
- * program developed by the user.
- *
- * SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
- * WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
- *
- * Sun RPC is provided with no support and without any obligation on the
- * part of Sun Microsystems, Inc. to assist in its use, correction,
- * modification or enhancement.
- *
- * SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
- * INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
- * OR ANY PART THEREOF.
- *
- * In no event will Sun Microsystems, Inc. be liable for any lost revenue
- * or profits or other special, indirect and consequential damages, even if
- * Sun has been advised of the possibility of such damages.
- *
- * Sun Microsystems, Inc.
- * 2550 Garcia Avenue
- * Mountain View, California 94043
- */
-#if !defined(lint) && defined(SCCSIDS)
-static char sccsid[] = "@(#)xdr.c 1.35 87/08/12";
-#endif
-
-/*
- * xdr.c, Generic XDR routines implementation.
- *
- * Copyright (C) 1986, Sun Microsystems, Inc.
- *
- * These are the "generic" xdr routines used to serialize and de-serialize
- * most common data items. See xdr.h for more info on the interface to
- * xdr.
- */
-
-#include <stdio.h>
-#include <limits.h>
-#include <string.h>
-#include <libintl.h>
-
-#include "types.h"
-#include "xdr.h"
-
-#ifdef USE_IN_LIBIO
-# include <wchar.h>
-#endif
-
-/*
- * constants specific to the xdr "protocol"
- */
-#define XDR_FALSE ((long) 0)
-#define XDR_TRUE ((long) 1)
-#define LASTUNSIGNED ((u_int) 0-1)
-
-/*
- * for unit alignment
- */
-static const char xdr_zero[BYTES_PER_XDR_UNIT] = {0, 0, 0, 0};
-
-/*
- * Free a data structure using XDR
- * Not a filter, but a convenient utility nonetheless
- */
-void
-xdr_free (xdrproc_t proc, char *objp)
-{
- XDR x;
-
- x.x_op = XDR_FREE;
- (*proc) (&x, objp);
-}
-
-/*
- * XDR nothing
- */
-bool_t
-xdr_void (void)
-{
- return TRUE;
-}
-INTDEF(xdr_void)
-
-/*
- * XDR integers
- */
-bool_t
-xdr_int (XDR *xdrs, int *ip)
-{
-
-#if INT_MAX < LONG_MAX
- long l;
-
- switch (xdrs->x_op)
- {
- case XDR_ENCODE:
- l = (long) *ip;
- return XDR_PUTLONG (xdrs, &l);
-
- case XDR_DECODE:
- if (!XDR_GETLONG (xdrs, &l))
- {
- return FALSE;
- }
- *ip = (int) l;
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-#elif INT_MAX == LONG_MAX
- return INTUSE(xdr_long) (xdrs, (long *) ip);
-#elif INT_MAX == SHRT_MAX
- return INTUSE(xdr_short) (xdrs, (short *) ip);
-#else
-#error unexpected integer sizes in_xdr_int()
-#endif
-}
-INTDEF(xdr_int)
-
-/*
- * XDR unsigned integers
- */
-bool_t
-xdr_u_int (XDR *xdrs, u_int *up)
-{
-#if UINT_MAX < ULONG_MAX
- long l;
-
- switch (xdrs->x_op)
- {
- case XDR_ENCODE:
- l = (u_long) * up;
- return XDR_PUTLONG (xdrs, &l);
-
- case XDR_DECODE:
- if (!XDR_GETLONG (xdrs, &l))
- {
- return FALSE;
- }
- *up = (u_int) (u_long) l;
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-#elif UINT_MAX == ULONG_MAX
- return INTUSE(xdr_u_long) (xdrs, (u_long *) up);
-#elif UINT_MAX == USHRT_MAX
- return INTUSE(xdr_short) (xdrs, (short *) up);
-#else
-#error unexpected integer sizes in_xdr_u_int()
-#endif
-}
-INTDEF(xdr_u_int)
-
-/*
- * XDR long integers
- * The definition of xdr_long() is kept for backward
- * compatibility. Instead xdr_int() should be used.
- */
-bool_t
-xdr_long (XDR *xdrs, long *lp)
-{
-
- if (xdrs->x_op == XDR_ENCODE
- && (sizeof (int32_t) == sizeof (long)
- || (int32_t) *lp == *lp))
- return XDR_PUTLONG (xdrs, lp);
-
- if (xdrs->x_op == XDR_DECODE)
- return XDR_GETLONG (xdrs, lp);
-
- if (xdrs->x_op == XDR_FREE)
- return TRUE;
-
- return FALSE;
-}
-INTDEF(xdr_long)
-
-/*
- * XDR unsigned long integers
- * The definition of xdr_u_long() is kept for backward
- * compatibility. Instead xdr_u_int() should be used.
- */
-bool_t
-xdr_u_long (XDR *xdrs, u_long *ulp)
-{
- switch (xdrs->x_op)
- {
- case XDR_DECODE:
- {
- long int tmp;
-
- if (XDR_GETLONG (xdrs, &tmp) == FALSE)
- return FALSE;
-
- *ulp = (uint32_t) tmp;
- return TRUE;
- }
-
- case XDR_ENCODE:
- if (sizeof (uint32_t) != sizeof (u_long)
- && (uint32_t) *ulp != *ulp)
- return FALSE;
-
- return XDR_PUTLONG (xdrs, (long *) ulp);
-
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_u_long)
-
-/*
- * XDR hyper integers
- * same as xdr_u_hyper - open coded to save a proc call!
- */
-bool_t
-xdr_hyper (XDR *xdrs, quad_t *llp)
-{
- long int t1, t2;
-
- if (xdrs->x_op == XDR_ENCODE)
- {
- t1 = (long) ((*llp) >> 32);
- t2 = (long) (*llp);
- return (XDR_PUTLONG(xdrs, &t1) && XDR_PUTLONG(xdrs, &t2));
- }
-
- if (xdrs->x_op == XDR_DECODE)
- {
- if (!XDR_GETLONG(xdrs, &t1) || !XDR_GETLONG(xdrs, &t2))
- return FALSE;
- *llp = ((quad_t) t1) << 32;
- *llp |= (uint32_t) t2;
- return TRUE;
- }
-
- if (xdrs->x_op == XDR_FREE)
- return TRUE;
-
- return FALSE;
-}
-INTDEF(xdr_hyper)
-
-
-/*
- * XDR hyper integers
- * same as xdr_hyper - open coded to save a proc call!
- */
-bool_t
-xdr_u_hyper (XDR *xdrs, u_quad_t *ullp)
-{
- long int t1, t2;
-
- if (xdrs->x_op == XDR_ENCODE)
- {
- t1 = (unsigned long) ((*ullp) >> 32);
- t2 = (unsigned long) (*ullp);
- return (XDR_PUTLONG(xdrs, &t1) && XDR_PUTLONG(xdrs, &t2));
- }
-
- if (xdrs->x_op == XDR_DECODE)
- {
- if (!XDR_GETLONG(xdrs, &t1) || !XDR_GETLONG(xdrs, &t2))
- return FALSE;
- *ullp = ((u_quad_t) t1) << 32;
- *ullp |= (uint32_t) t2;
- return TRUE;
- }
-
- if (xdrs->x_op == XDR_FREE)
- return TRUE;
-
- return FALSE;
-}
-INTDEF(xdr_u_hyper)
-
-bool_t
-xdr_longlong_t (XDR *xdrs, quad_t *llp)
-{
- return INTUSE(xdr_hyper) (xdrs, llp);
-}
-
-bool_t
-xdr_u_longlong_t (XDR *xdrs, u_quad_t *ullp)
-{
- return INTUSE(xdr_u_hyper) (xdrs, ullp);
-}
-
-/*
- * XDR short integers
- */
-bool_t
-xdr_short (XDR *xdrs, short *sp)
-{
- long l;
-
- switch (xdrs->x_op)
- {
- case XDR_ENCODE:
- l = (long) *sp;
- return XDR_PUTLONG (xdrs, &l);
-
- case XDR_DECODE:
- if (!XDR_GETLONG (xdrs, &l))
- {
- return FALSE;
- }
- *sp = (short) l;
- return TRUE;
-
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_short)
-
-/*
- * XDR unsigned short integers
- */
-bool_t
-xdr_u_short (XDR *xdrs, u_short *usp)
-{
- long l;
-
- switch (xdrs->x_op)
- {
- case XDR_ENCODE:
- l = (u_long) * usp;
- return XDR_PUTLONG (xdrs, &l);
-
- case XDR_DECODE:
- if (!XDR_GETLONG (xdrs, &l))
- {
- return FALSE;
- }
- *usp = (u_short) (u_long) l;
- return TRUE;
-
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_u_short)
-
-
-/*
- * XDR a char
- */
-bool_t
-xdr_char (XDR *xdrs, char *cp)
-{
- int i;
-
- i = (*cp);
- if (!INTUSE(xdr_int) (xdrs, &i))
- {
- return FALSE;
- }
- *cp = i;
- return TRUE;
-}
-
-/*
- * XDR an unsigned char
- */
-bool_t
-xdr_u_char (XDR *xdrs, u_char *cp)
-{
- u_int u;
-
- u = (*cp);
- if (!INTUSE(xdr_u_int) (xdrs, &u))
- {
- return FALSE;
- }
- *cp = u;
- return TRUE;
-}
-
-/*
- * XDR booleans
- */
-bool_t
-xdr_bool (XDR *xdrs, bool_t *bp)
-{
- long lb;
-
- switch (xdrs->x_op)
- {
- case XDR_ENCODE:
- lb = *bp ? XDR_TRUE : XDR_FALSE;
- return XDR_PUTLONG (xdrs, &lb);
-
- case XDR_DECODE:
- if (!XDR_GETLONG (xdrs, &lb))
- {
- return FALSE;
- }
- *bp = (lb == XDR_FALSE) ? FALSE : TRUE;
- return TRUE;
-
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_bool)
-
-/*
- * XDR enumerations
- */
-bool_t
-xdr_enum (XDR *xdrs, enum_t *ep)
-{
- enum sizecheck
- {
- SIZEVAL
- }; /* used to find the size of an enum */
-
- /*
- * enums are treated as ints
- */
- if (sizeof (enum sizecheck) == 4)
- {
-#if INT_MAX < LONG_MAX
- long l;
-
- switch (xdrs->x_op)
- {
- case XDR_ENCODE:
- l = *ep;
- return XDR_PUTLONG (xdrs, &l);
-
- case XDR_DECODE:
- if (!XDR_GETLONG (xdrs, &l))
- {
- return FALSE;
- }
- *ep = l;
- case XDR_FREE:
- return TRUE;
-
- }
- return FALSE;
-#else
- return INTUSE(xdr_long) (xdrs, (long *) ep);
-#endif
- }
- else if (sizeof (enum sizecheck) == sizeof (short))
- {
- return INTUSE(xdr_short) (xdrs, (short *) ep);
- }
- else
- {
- return FALSE;
- }
-}
-INTDEF(xdr_enum)
-
-/*
- * XDR opaque data
- * Allows the specification of a fixed size sequence of opaque bytes.
- * cp points to the opaque object and cnt gives the byte length.
- */
-bool_t
-xdr_opaque (XDR *xdrs, caddr_t cp, u_int cnt)
-{
- u_int rndup;
- static char crud[BYTES_PER_XDR_UNIT];
-
- /*
- * if no data we are done
- */
- if (cnt == 0)
- return TRUE;
-
- /*
- * round byte count to full xdr units
- */
- rndup = cnt % BYTES_PER_XDR_UNIT;
- if (rndup > 0)
- rndup = BYTES_PER_XDR_UNIT - rndup;
-
- switch (xdrs->x_op)
- {
- case XDR_DECODE:
- if (!XDR_GETBYTES (xdrs, cp, cnt))
- {
- return FALSE;
- }
- if (rndup == 0)
- return TRUE;
- return XDR_GETBYTES (xdrs, (caddr_t)crud, rndup);
-
- case XDR_ENCODE:
- if (!XDR_PUTBYTES (xdrs, cp, cnt))
- {
- return FALSE;
- }
- if (rndup == 0)
- return TRUE;
- return XDR_PUTBYTES (xdrs, xdr_zero, rndup);
-
- case XDR_FREE:
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_opaque)
-
-/*
- * XDR counted bytes
- * *cpp is a pointer to the bytes, *sizep is the count.
- * If *cpp is NULL maxsize bytes are allocated
- */
-bool_t
-xdr_bytes (xdrs, cpp, sizep, maxsize)
- XDR *xdrs;
- char **cpp;
- u_int *sizep;
- u_int maxsize;
-{
- char *sp = *cpp; /* sp is the actual string pointer */
- u_int nodesize;
-
- /*
- * first deal with the length since xdr bytes are counted
- */
- if (!INTUSE(xdr_u_int) (xdrs, sizep))
- {
- return FALSE;
- }
- nodesize = *sizep;
- if ((nodesize > maxsize) && (xdrs->x_op != XDR_FREE))
- {
- return FALSE;
- }
-
- /*
- * now deal with the actual bytes
- */
- switch (xdrs->x_op)
- {
- case XDR_DECODE:
- if (nodesize == 0)
- {
- return TRUE;
- }
- if (sp == NULL)
- {
- *cpp = sp = (char *) mem_alloc (nodesize);
- }
- if (sp == NULL)
- {
- fprintf (NULL, "%s", "xdr_bytes: out of memory\n");
- return FALSE;
- }
- /* fall into ... */
-
- case XDR_ENCODE:
- return INTUSE(xdr_opaque) (xdrs, sp, nodesize);
-
- case XDR_FREE:
- if (sp != NULL)
- {
- mem_free (sp, nodesize);
- *cpp = NULL;
- }
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_bytes)
-
-/*
- * Implemented here due to commonality of the object.
- */
-bool_t
-xdr_netobj (xdrs, np)
- XDR *xdrs;
- struct netobj *np;
-{
-
- return INTUSE(xdr_bytes) (xdrs, &np->n_bytes, &np->n_len, MAX_NETOBJ_SZ);
-}
-INTDEF(xdr_netobj)
-
-/*
- * XDR a discriminated union
- * Support routine for discriminated unions.
- * You create an array of xdrdiscrim structures, terminated with
- * an entry with a null procedure pointer. The routine gets
- * the discriminant value and then searches the array of xdrdiscrims
- * looking for that value. It calls the procedure given in the xdrdiscrim
- * to handle the discriminant. If there is no specific routine a default
- * routine may be called.
- * If there is no specific or default routine an error is returned.
- */
-bool_t
-xdr_union (xdrs, dscmp, unp, choices, dfault)
- XDR *xdrs;
- enum_t *dscmp; /* enum to decide which arm to work on */
- char *unp; /* the union itself */
- const struct xdr_discrim *choices; /* [value, xdr proc] for each arm */
- xdrproc_t dfault; /* default xdr routine */
-{
- enum_t dscm;
-
- /*
- * we deal with the discriminator; it's an enum
- */
- if (!INTUSE(xdr_enum) (xdrs, dscmp))
- {
- return FALSE;
- }
- dscm = *dscmp;
-
- /*
- * search choices for a value that matches the discriminator.
- * if we find one, execute the xdr routine for that value.
- */
- for (; choices->proc != NULL_xdrproc_t; choices++)
- {
- if (choices->value == dscm)
- return (*(choices->proc)) (xdrs, unp, LASTUNSIGNED);
- }
-
- /*
- * no match - execute the default xdr routine if there is one
- */
- return ((dfault == NULL_xdrproc_t) ? FALSE :
- (*dfault) (xdrs, unp, LASTUNSIGNED));
-}
-INTDEF(xdr_union)
-
-
-/*
- * Non-portable xdr primitives.
- * Care should be taken when moving these routines to new architectures.
- */
-
-
-/*
- * XDR null terminated ASCII strings
- * xdr_string deals with "C strings" - arrays of bytes that are
- * terminated by a NULL character. The parameter cpp references a
- * pointer to storage; If the pointer is null, then the necessary
- * storage is allocated. The last parameter is the max allowed length
- * of the string as specified by a protocol.
- */
-bool_t
-xdr_string (xdrs, cpp, maxsize)
- XDR *xdrs;
- char **cpp;
- u_int maxsize;
-{
- char *sp = *cpp; /* sp is the actual string pointer */
- u_int size;
- u_int nodesize;
-
- /*
- * first deal with the length since xdr strings are counted-strings
- */
- switch (xdrs->x_op)
- {
- case XDR_FREE:
- if (sp == NULL)
- {
- return TRUE; /* already free */
- }
- /* fall through... */
- case XDR_ENCODE:
- if (sp == NULL)
- return FALSE;
- size = strlen (sp);
- break;
- case XDR_DECODE:
- break;
- }
- if (!INTUSE(xdr_u_int) (xdrs, &size))
- {
- return FALSE;
- }
- if (size > maxsize)
- {
- return FALSE;
- }
- nodesize = size + 1;
- if (nodesize == 0)
- {
- /* This means an overflow. It a bug in the caller which
- provided a too large maxsize but nevertheless catch it
- here. */
- return FALSE;
- }
-
- /*
- * now deal with the actual bytes
- */
- switch (xdrs->x_op)
- {
- case XDR_DECODE:
- if (sp == NULL)
- *cpp = sp = (char *) mem_alloc (nodesize);
- if (sp == NULL)
- {
- fprintf (NULL, "%s", "xdr_string: out of memory\n");
- return FALSE;
- }
- sp[size] = 0;
- /* fall into ... */
-
- case XDR_ENCODE:
- return INTUSE(xdr_opaque) (xdrs, sp, size);
-
- case XDR_FREE:
- mem_free (sp, nodesize);
- *cpp = NULL;
- return TRUE;
- }
- return FALSE;
-}
-INTDEF(xdr_string)
-
-/*
- * Wrapper for xdr_string that can be called directly from
- * routines like clnt_call
- */
-bool_t
-xdr_wrapstring (xdrs, cpp)
- XDR *xdrs;
- char **cpp;
-{
- if (INTUSE(xdr_string) (xdrs, cpp, LASTUNSIGNED))
- {
- return TRUE;
- }
- return FALSE;
-}
+++ /dev/null
-/*
- * Sun RPC is a product of Sun Microsystems, Inc. and is provided for
- * unrestricted use provided that this legend is included on all tape
- * media and as a part of the software program in whole or part. Users
- * may copy or modify Sun RPC without charge, but are not authorized
- * to license or distribute it to anyone else except as part of a product or
- * program developed by the user.
- *
- * SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
- * WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
- *
- * Sun RPC is provided with no support and without any obligation on the
- * part of Sun Microsystems, Inc. to assist in its use, correction,
- * modification or enhancement.
- *
- * SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
- * INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
- * OR ANY PART THEREOF.
- *
- * In no event will Sun Microsystems, Inc. be liable for any lost revenue
- * or profits or other special, indirect and consequential damages, even if
- * Sun has been advised of the possibility of such damages.
- *
- * Sun Microsystems, Inc.
- * 2550 Garcia Avenue
- * Mountain View, California 94043
- */
-
-/*
- * xdr.h, External Data Representation Serialization Routines.
- *
- * Copyright (C) 1984, Sun Microsystems, Inc.
- */
-
-#ifndef _RPC_XDR_H
-#define _RPC_XDR_H 1
-
-#include <features.h>
-#include <sys/types.h>
-#include "types.h"
-
-/* We need FILE. */
-#include <stdio.h>
-
-__BEGIN_DECLS
-
-/*
- * XDR provides a conventional way for converting between C data
- * types and an external bit-string representation. Library supplied
- * routines provide for the conversion on built-in C data types. These
- * routines and utility routines defined here are used to help implement
- * a type encode/decode routine for each user-defined type.
- *
- * Each data type provides a single procedure which takes two arguments:
- *
- * bool_t
- * xdrproc(xdrs, argresp)
- * XDR *xdrs;
- * <type> *argresp;
- *
- * xdrs is an instance of a XDR handle, to which or from which the data
- * type is to be converted. argresp is a pointer to the structure to be
- * converted. The XDR handle contains an operation field which indicates
- * which of the operations (ENCODE, DECODE * or FREE) is to be performed.
- *
- * XDR_DECODE may allocate space if the pointer argresp is null. This
- * data can be freed with the XDR_FREE operation.
- *
- * We write only one procedure per data type to make it easy
- * to keep the encode and decode procedures for a data type consistent.
- * In many cases the same code performs all operations on a user defined type,
- * because all the hard work is done in the component type routines.
- * decode as a series of calls on the nested data types.
- */
-
-/*
- * Xdr operations. XDR_ENCODE causes the type to be encoded into the
- * stream. XDR_DECODE causes the type to be extracted from the stream.
- * XDR_FREE can be used to release the space allocated by an XDR_DECODE
- * request.
- */
-enum xdr_op {
- XDR_ENCODE = 0,
- XDR_DECODE = 1,
- XDR_FREE = 2
-};
-
-/*
- * This is the number of bytes per unit of external data.
- */
-#define BYTES_PER_XDR_UNIT (4)
-/*
- * This only works if the above is a power of 2. But it's defined to be
- * 4 by the appropriate RFCs. So it will work. And it's normally quicker
- * than the old routine.
- */
-#if 1
-#define RNDUP(x) (((x) + BYTES_PER_XDR_UNIT - 1) & ~(BYTES_PER_XDR_UNIT - 1))
-#else /* this is the old routine */
-#define RNDUP(x) ((((x) + BYTES_PER_XDR_UNIT - 1) / BYTES_PER_XDR_UNIT) \
- * BYTES_PER_XDR_UNIT)
-#endif
-
-/*
- * The XDR handle.
- * Contains operation which is being applied to the stream,
- * an operations vector for the particular implementation (e.g. see xdr_mem.c),
- * and two private fields for the use of the particular implementation.
- */
-typedef struct XDR XDR;
-struct XDR
- {
- enum xdr_op x_op; /* operation; fast additional param */
- struct xdr_ops
- {
- bool_t (*x_getlong) (XDR *__xdrs, long *__lp);
- /* get a long from underlying stream */
- bool_t (*x_putlong) (XDR *__xdrs, __const long *__lp);
- /* put a long to " */
- bool_t (*x_getbytes) (XDR *__xdrs, caddr_t __addr, u_int __len);
- /* get some bytes from " */
- bool_t (*x_putbytes) (XDR *__xdrs, __const char *__addr, u_int __len);
- /* put some bytes to " */
- u_int (*x_getpostn) (__const XDR *__xdrs);
- /* returns bytes off from beginning */
- bool_t (*x_setpostn) (XDR *__xdrs, u_int __pos);
- /* lets you reposition the stream */
- int32_t *(*x_inline) (XDR *__xdrs, u_int __len);
- /* buf quick ptr to buffered data */
- void (*x_destroy) (XDR *__xdrs);
- /* free privates of this xdr_stream */
- bool_t (*x_getint32) (XDR *__xdrs, int32_t *__ip);
- /* get a int from underlying stream */
- bool_t (*x_putint32) (XDR *__xdrs, __const int32_t *__ip);
- /* put a int to " */
- }
- *x_ops;
- caddr_t x_public; /* users' data */
- caddr_t x_private; /* pointer to private data */
- caddr_t x_base; /* private used for position info */
- u_int x_handy; /* extra private word */
- };
-
-/*
- * A xdrproc_t exists for each data type which is to be encoded or decoded.
- *
- * The second argument to the xdrproc_t is a pointer to an opaque pointer.
- * The opaque pointer generally points to a structure of the data type
- * to be decoded. If this pointer is 0, then the type routines should
- * allocate dynamic storage of the appropriate size and return it.
- * bool_t (*xdrproc_t)(XDR *, caddr_t *);
- */
-typedef bool_t (*xdrproc_t) (XDR *, void *,...);
-
-
-/*
- * Operations defined on a XDR handle
- *
- * XDR *xdrs;
- * int32_t *int32p;
- * long *longp;
- * caddr_t addr;
- * u_int len;
- * u_int pos;
- */
-#define XDR_GETINT32(xdrs, int32p) \
- (*(xdrs)->x_ops->x_getint32)(xdrs, int32p)
-#define xdr_getint32(xdrs, int32p) \
- (*(xdrs)->x_ops->x_getint32)(xdrs, int32p)
-
-#define XDR_PUTINT32(xdrs, int32p) \
- (*(xdrs)->x_ops->x_putint32)(xdrs, int32p)
-#define xdr_putint32(xdrs, int32p) \
- (*(xdrs)->x_ops->x_putint32)(xdrs, int32p)
-
-#define XDR_GETLONG(xdrs, longp) \
- (*(xdrs)->x_ops->x_getlong)(xdrs, longp)
-#define xdr_getlong(xdrs, longp) \
- (*(xdrs)->x_ops->x_getlong)(xdrs, longp)
-
-#define XDR_PUTLONG(xdrs, longp) \
- (*(xdrs)->x_ops->x_putlong)(xdrs, longp)
-#define xdr_putlong(xdrs, longp) \
- (*(xdrs)->x_ops->x_putlong)(xdrs, longp)
-
-#define XDR_GETBYTES(xdrs, addr, len) \
- (*(xdrs)->x_ops->x_getbytes)(xdrs, addr, len)
-#define xdr_getbytes(xdrs, addr, len) \
- (*(xdrs)->x_ops->x_getbytes)(xdrs, addr, len)
-
-#define XDR_PUTBYTES(xdrs, addr, len) \
- (*(xdrs)->x_ops->x_putbytes)(xdrs, addr, len)
-#define xdr_putbytes(xdrs, addr, len) \
- (*(xdrs)->x_ops->x_putbytes)(xdrs, addr, len)
-
-#define XDR_GETPOS(xdrs) \
- (*(xdrs)->x_ops->x_getpostn)(xdrs)
-#define xdr_getpos(xdrs) \
- (*(xdrs)->x_ops->x_getpostn)(xdrs)
-
-#define XDR_SETPOS(xdrs, pos) \
- (*(xdrs)->x_ops->x_setpostn)(xdrs, pos)
-#define xdr_setpos(xdrs, pos) \
- (*(xdrs)->x_ops->x_setpostn)(xdrs, pos)
-
-#define XDR_INLINE(xdrs, len) \
- (*(xdrs)->x_ops->x_inline)(xdrs, len)
-#define xdr_inline(xdrs, len) \
- (*(xdrs)->x_ops->x_inline)(xdrs, len)
-
-#define XDR_DESTROY(xdrs) \
- do { \
- if ((xdrs)->x_ops->x_destroy) \
- (*(xdrs)->x_ops->x_destroy)(xdrs); \
- } while (0)
-#define xdr_destroy(xdrs) \
- do { \
- if ((xdrs)->x_ops->x_destroy) \
- (*(xdrs)->x_ops->x_destroy)(xdrs); \
- } while (0)
-
-/*
- * Support struct for discriminated unions.
- * You create an array of xdrdiscrim structures, terminated with
- * a entry with a null procedure pointer. The xdr_union routine gets
- * the discriminant value and then searches the array of structures
- * for a matching value. If a match is found the associated xdr routine
- * is called to handle that part of the union. If there is
- * no match, then a default routine may be called.
- * If there is no match and no default routine it is an error.
- */
-#define NULL_xdrproc_t ((xdrproc_t)0)
-struct xdr_discrim
-{
- int value;
- xdrproc_t proc;
-};
-
-/*
- * Inline routines for fast encode/decode of primitive data types.
- * Caveat emptor: these use single memory cycles to get the
- * data from the underlying buffer, and will fail to operate
- * properly if the data is not aligned. The standard way to use these
- * is to say:
- * if ((buf = XDR_INLINE(xdrs, count)) == NULL)
- * return (FALSE);
- * <<< macro calls >>>
- * where ``count'' is the number of bytes of data occupied
- * by the primitive data types.
- *
- * N.B. and frozen for all time: each data type here uses 4 bytes
- * of external representation.
- */
-
-#define IXDR_GET_INT32(buf) ((int32_t)ntohl((uint32_t)*(buf)++))
-#define IXDR_PUT_INT32(buf, v) (*(buf)++ = (int32_t)htonl((uint32_t)(v)))
-#define IXDR_GET_U_INT32(buf) ((uint32_t)IXDR_GET_INT32(buf))
-#define IXDR_PUT_U_INT32(buf, v) IXDR_PUT_INT32(buf, (int32_t)(v))
-
-/* WARNING: The IXDR_*_LONG defines are removed by Sun for new platforms
- * and shouldn't be used any longer. Code which use this defines or longs
- * in the RPC code will not work on 64bit Solaris platforms !
- */
-#define IXDR_GET_LONG(buf) ((long)IXDR_GET_U_INT32(buf))
-#define IXDR_PUT_LONG(buf, v) ((long)IXDR_PUT_INT32(buf, (long)(v)))
-#define IXDR_GET_U_LONG(buf) ((u_long)IXDR_GET_LONG(buf))
-#define IXDR_PUT_U_LONG(buf, v) IXDR_PUT_LONG(buf, (long)(v))
-
-
-#define IXDR_GET_BOOL(buf) ((bool_t)IXDR_GET_LONG(buf))
-#define IXDR_GET_ENUM(buf, t) ((t)IXDR_GET_LONG(buf))
-#define IXDR_GET_SHORT(buf) ((short)IXDR_GET_LONG(buf))
-#define IXDR_GET_U_SHORT(buf) ((u_short)IXDR_GET_LONG(buf))
-
-#define IXDR_PUT_BOOL(buf, v) IXDR_PUT_LONG(buf, (long)(v))
-#define IXDR_PUT_ENUM(buf, v) IXDR_PUT_LONG(buf, (long)(v))
-#define IXDR_PUT_SHORT(buf, v) IXDR_PUT_LONG(buf, (long)(v))
-#define IXDR_PUT_U_SHORT(buf, v) IXDR_PUT_LONG(buf, (long)(v))
-
-/*
- * These are the "generic" xdr routines.
- * None of these can have const applied because it's not possible to
- * know whether the call is a read or a write to the passed parameter
- * also, the XDR structure is always updated by some of these calls.
- */
-extern bool_t xdr_void (void) __THROW;
-extern bool_t xdr_short (XDR *__xdrs, short *__sp) __THROW;
-extern bool_t xdr_u_short (XDR *__xdrs, u_short *__usp) __THROW;
-extern bool_t xdr_int (XDR *__xdrs, int *__ip) __THROW;
-extern bool_t xdr_u_int (XDR *__xdrs, u_int *__up) __THROW;
-extern bool_t xdr_long (XDR *__xdrs, long *__lp) __THROW;
-extern bool_t xdr_u_long (XDR *__xdrs, u_long *__ulp) __THROW;
-extern bool_t xdr_hyper (XDR *__xdrs, quad_t *__llp) __THROW;
-extern bool_t xdr_u_hyper (XDR *__xdrs, u_quad_t *__ullp) __THROW;
-extern bool_t xdr_longlong_t (XDR *__xdrs, quad_t *__llp) __THROW;
-extern bool_t xdr_u_longlong_t (XDR *__xdrs, u_quad_t *__ullp) __THROW;
-extern bool_t xdr_int8_t (XDR *__xdrs, int8_t *__ip) __THROW;
-extern bool_t xdr_uint8_t (XDR *__xdrs, uint8_t *__up) __THROW;
-extern bool_t xdr_int16_t (XDR *__xdrs, int16_t *__ip) __THROW;
-extern bool_t xdr_uint16_t (XDR *__xdrs, uint16_t *__up) __THROW;
-extern bool_t xdr_int32_t (XDR *__xdrs, int32_t *__ip) __THROW;
-extern bool_t xdr_uint32_t (XDR *__xdrs, uint32_t *__up) __THROW;
-extern bool_t xdr_int64_t (XDR *__xdrs, int64_t *__ip) __THROW;
-extern bool_t xdr_uint64_t (XDR *__xdrs, uint64_t *__up) __THROW;
-extern bool_t xdr_quad_t (XDR *__xdrs, quad_t *__ip) __THROW;
-extern bool_t xdr_u_quad_t (XDR *__xdrs, u_quad_t *__up) __THROW;
-extern bool_t xdr_bool (XDR *__xdrs, bool_t *__bp) __THROW;
-extern bool_t xdr_enum (XDR *__xdrs, enum_t *__ep) __THROW;
-extern bool_t xdr_array (XDR * _xdrs, caddr_t *__addrp, u_int *__sizep,
- u_int __maxsize, u_int __elsize, xdrproc_t __elproc)
- __THROW;
-extern bool_t xdr_bytes (XDR *__xdrs, char **__cpp, u_int *__sizep,
- u_int __maxsize) __THROW;
-extern bool_t xdr_opaque (XDR *__xdrs, caddr_t __cp, u_int __cnt) __THROW;
-extern bool_t xdr_string (XDR *__xdrs, char **__cpp, u_int __maxsize) __THROW;
-extern bool_t xdr_union (XDR *__xdrs, enum_t *__dscmp, char *__unp,
- __const struct xdr_discrim *__choices,
- xdrproc_t dfault) __THROW;
-extern bool_t xdr_char (XDR *__xdrs, char *__cp) __THROW;
-extern bool_t xdr_u_char (XDR *__xdrs, u_char *__cp) __THROW;
-extern bool_t xdr_vector (XDR *__xdrs, char *__basep, u_int __nelem,
- u_int __elemsize, xdrproc_t __xdr_elem) __THROW;
-extern bool_t xdr_float (XDR *__xdrs, float *__fp) __THROW;
-extern bool_t xdr_double (XDR *__xdrs, double *__dp) __THROW;
-extern bool_t xdr_reference (XDR *__xdrs, caddr_t *__xpp, u_int __size,
- xdrproc_t __proc) __THROW;
-extern bool_t xdr_pointer (XDR *__xdrs, char **__objpp,
- u_int __obj_size, xdrproc_t __xdr_obj) __THROW;
-extern bool_t xdr_wrapstring (XDR *__xdrs, char **__cpp) __THROW;
-extern u_long xdr_sizeof (xdrproc_t, void *) __THROW;
-
-/*
- * Common opaque bytes objects used by many rpc protocols;
- * declared here due to commonality.
- */
-#define MAX_NETOBJ_SZ 1024
-struct netobj
-{
- u_int n_len;
- char *n_bytes;
-};
-typedef struct netobj netobj;
-extern bool_t xdr_netobj (XDR *__xdrs, struct netobj *__np) __THROW;
-
-/*
- * These are the public routines for the various implementations of
- * xdr streams.
- */
-
-/* XDR using memory buffers */
-extern void xdrmem_create (XDR *__xdrs, __const caddr_t __addr,
- u_int __size, enum xdr_op __xop) __THROW;
-
-/* XDR using stdio library */
-extern void xdrstdio_create (XDR *__xdrs, FILE *__file, enum xdr_op __xop)
- __THROW;
-
-/* XDR pseudo records for tcp */
-extern void xdrrec_create (XDR *__xdrs, u_int __sendsize,
- u_int __recvsize, caddr_t __tcp_handle,
- int (*__readit) (char *, char *, int),
- int (*__writeit) (char *, char *, int)) __THROW;
-
-/* make end of xdr record */
-extern bool_t xdrrec_endofrecord (XDR *__xdrs, bool_t __sendnow) __THROW;
-
-/* move to beginning of next record */
-extern bool_t xdrrec_skiprecord (XDR *__xdrs) __THROW;
-
-/* true if no more input */
-extern bool_t xdrrec_eof (XDR *__xdrs) __THROW;
-
-/* free memory buffers for xdr */
-extern void xdr_free (xdrproc_t __proc, char *__objp) __THROW;
-
-__END_DECLS
-
-#endif /* rpc/xdr.h */
+++ /dev/null
-# define INTUSE(name) name
-# define INTDEF(name)
-/* @(#)xdr_array.c 2.1 88/07/29 4.0 RPCSRC */
-/*
- * Sun RPC is a product of Sun Microsystems, Inc. and is provided for
- * unrestricted use provided that this legend is included on all tape
- * media and as a part of the software program in whole or part. Users
- * may copy or modify Sun RPC without charge, but are not authorized
- * to license or distribute it to anyone else except as part of a product or
- * program developed by the user.
- *
- * SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
- * WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
- *
- * Sun RPC is provided with no support and without any obligation on the
- * part of Sun Microsystems, Inc. to assist in its use, correction,
- * modification or enhancement.
- *
- * SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
- * INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
- * OR ANY PART THEREOF.
- *
- * In no event will Sun Microsystems, Inc. be liable for any lost revenue
- * or profits or other special, indirect and consequential damages, even if
- * Sun has been advised of the possibility of such damages.
- *
- * Sun Microsystems, Inc.
- * 2550 Garcia Avenue
- * Mountain View, California 94043
- */
-#if !defined(lint) && defined(SCCSIDS)
-static char sccsid[] = "@(#)xdr_array.c 1.10 87/08/11 Copyr 1984 Sun Micro";
-#endif
-
-/*
- * xdr_array.c, Generic XDR routines implementation.
- *
- * Copyright (C) 1984, Sun Microsystems, Inc.
- *
- * These are the "non-trivial" xdr primitives used to serialize and de-serialize
- * arrays. See xdr.h for more info on the interface to xdr.
- */
-
-#include <stdio.h>
-#include <string.h>
-#include "types.h"
-#include "xdr.h"
-#include <libintl.h>
-#include <limits.h>
-
-#ifdef USE_IN_LIBIO
-# include <wchar.h>
-#endif
-
-#define LASTUNSIGNED ((u_int)0-1)
-
-
-/*
- * XDR an array of arbitrary elements
- * *addrp is a pointer to the array, *sizep is the number of elements.
- * If addrp is NULL (*sizep * elsize) bytes are allocated.
- * elsize is the size (in bytes) of each element, and elproc is the
- * xdr procedure to call to handle each element of the array.
- */
-bool_t
-xdr_array (xdrs, addrp, sizep, maxsize, elsize, elproc)
- XDR *xdrs;
- caddr_t *addrp; /* array pointer */
- u_int *sizep; /* number of elements */
- u_int maxsize; /* max numberof elements */
- u_int elsize; /* size in bytes of each element */
- xdrproc_t elproc; /* xdr routine to handle each element */
-{
- u_int i;
- caddr_t target = *addrp;
- u_int c; /* the actual element count */
- bool_t stat = TRUE;
- u_int nodesize;
-
- /* like strings, arrays are really counted arrays */
- if (!INTUSE(xdr_u_int) (xdrs, sizep))
- {
- return FALSE;
- }
- c = *sizep;
- /*
- * XXX: Let the overflow possibly happen with XDR_FREE because mem_free()
- * doesn't actually use its second argument anyway.
- */
- if ((c > maxsize || c > UINT_MAX / elsize) && (xdrs->x_op != XDR_FREE))
- {
- return FALSE;
- }
- nodesize = c * elsize;
-
- /*
- * if we are deserializing, we may need to allocate an array.
- * We also save time by checking for a null array if we are freeing.
- */
- if (target == NULL)
- switch (xdrs->x_op)
- {
- case XDR_DECODE:
- if (c == 0)
- return TRUE;
- *addrp = target = mem_alloc (nodesize);
- if (target == NULL)
- {
- fprintf (stderr, "%s", "xdr_array: out of memory\n");
- return FALSE;
- }
- __bzero (target, nodesize);
- break;
-
- case XDR_FREE:
- return TRUE;
- default:
- break;
- }
-
- /*
- * now we xdr each element of array
- */
- for (i = 0; (i < c) && stat; i++)
- {
- stat = (*elproc) (xdrs, target, LASTUNSIGNED);
- target += elsize;
- }
-
- /*
- * the array may need freeing
- */
- if (xdrs->x_op == XDR_FREE)
- {
- mem_free (*addrp, nodesize);
- *addrp = NULL;
- }
- return stat;
-}
-INTDEF(xdr_array)
-
-/*
- * xdr_vector():
- *
- * XDR a fixed length array. Unlike variable-length arrays,
- * the storage of fixed length arrays is static and unfreeable.
- * > basep: base of the array
- * > size: size of the array
- * > elemsize: size of each element
- * > xdr_elem: routine to XDR each element
- */
-bool_t
-xdr_vector (xdrs, basep, nelem, elemsize, xdr_elem)
- XDR *xdrs;
- char *basep;
- u_int nelem;
- u_int elemsize;
- xdrproc_t xdr_elem;
-{
- u_int i;
- char *elptr;
-
- elptr = basep;
- for (i = 0; i < nelem; i++)
- {
- if (!(*xdr_elem) (xdrs, elptr, LASTUNSIGNED))
- {
- return FALSE;
- }
- elptr += elemsize;
- }
- return TRUE;
-}
+++ /dev/null
-/* @(#)xdr_float.c 2.1 88/07/29 4.0 RPCSRC */
-/*
- * Sun RPC is a product of Sun Microsystems, Inc. and is provided for
- * unrestricted use provided that this legend is included on all tape
- * media and as a part of the software program in whole or part. Users
- * may copy or modify Sun RPC without charge, but are not authorized
- * to license or distribute it to anyone else except as part of a product or
- * program developed by the user.
- *
- * SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
- * WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
- *
- * Sun RPC is provided with no support and without any obligation on the
- * part of Sun Microsystems, Inc. to assist in its use, correction,
- * modification or enhancement.
- *
- * SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
- * INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
- * OR ANY PART THEREOF.
- *
- * In no event will Sun Microsystems, Inc. be liable for any lost revenue
- * or profits or other special, indirect and consequential damages, even if
- * Sun has been advised of the possibility of such damages.
- *
- * Sun Microsystems, Inc.
- * 2550 Garcia Avenue
- * Mountain View, California 94043
- */
-#if !defined(lint) && defined(SCCSIDS)
-static char sccsid[] = "@(#)xdr_float.c 1.12 87/08/11 Copyr 1984 Sun Micro";
-#endif
-
-/*
- * xdr_float.c, Generic XDR routines implementation.
- *
- * Copyright (C) 1984, Sun Microsystems, Inc.
- *
- * These are the "floating point" xdr routines used to (de)serialize
- * most common data items. See xdr.h for more info on the interface to
- * xdr.
- */
-
-#include <stdio.h>
-#include <endian.h>
-
-#include "types.h"
-#include "xdr.h"
-
-/*
- * NB: Not portable.
- * This routine works on Suns (Sky / 68000's) and Vaxen.
- */
-
-#define LSW (__FLOAT_WORD_ORDER == __BIG_ENDIAN)
-
-#ifdef vax
-
-/* What IEEE single precision floating point looks like on a Vax */
-struct ieee_single {
- unsigned int mantissa: 23;
- unsigned int exp : 8;
- unsigned int sign : 1;
-};
-
-/* Vax single precision floating point */
-struct vax_single {
- unsigned int mantissa1 : 7;
- unsigned int exp : 8;
- unsigned int sign : 1;
- unsigned int mantissa2 : 16;
-};
-
-#define VAX_SNG_BIAS 0x81
-#define IEEE_SNG_BIAS 0x7f
-
-static struct sgl_limits {
- struct vax_single s;
- struct ieee_single ieee;
-} sgl_limits[2] = {
- {{ 0x7f, 0xff, 0x0, 0xffff }, /* Max Vax */
- { 0x0, 0xff, 0x0 }}, /* Max IEEE */
- {{ 0x0, 0x0, 0x0, 0x0 }, /* Min Vax */
- { 0x0, 0x0, 0x0 }} /* Min IEEE */
-};
-#endif /* vax */
-
-bool_t
-xdr_float(xdrs, fp)
- XDR *xdrs;
- float *fp;
-{
-#ifdef vax
- struct ieee_single is;
- struct vax_single vs, *vsp;
- struct sgl_limits *lim;
- int i;
-#endif
- switch (xdrs->x_op) {
-
- case XDR_ENCODE:
-#ifdef vax
- vs = *((struct vax_single *)fp);
- for (i = 0, lim = sgl_limits;
- i < sizeof(sgl_limits)/sizeof(struct sgl_limits);
- i++, lim++) {
- if ((vs.mantissa2 == lim->s.mantissa2) &&
- (vs.exp == lim->s.exp) &&
- (vs.mantissa1 == lim->s.mantissa1)) {
- is = lim->ieee;
- goto shipit;
- }
- }
- is.exp = vs.exp - VAX_SNG_BIAS + IEEE_SNG_BIAS;
- is.mantissa = (vs.mantissa1 << 16) | vs.mantissa2;
- shipit:
- is.sign = vs.sign;
- return (XDR_PUTLONG(xdrs, (long *)&is));
-#else
- if (sizeof(float) == sizeof(long))
- return (XDR_PUTLONG(xdrs, (long *)fp));
- else if (sizeof(float) == sizeof(int)) {
- long tmp = *(int *)fp;
- return (XDR_PUTLONG(xdrs, &tmp));
- }
- break;
-#endif
-
- case XDR_DECODE:
-#ifdef vax
- vsp = (struct vax_single *)fp;
- if (!XDR_GETLONG(xdrs, (long *)&is))
- return (FALSE);
- for (i = 0, lim = sgl_limits;
- i < sizeof(sgl_limits)/sizeof(struct sgl_limits);
- i++, lim++) {
- if ((is.exp == lim->ieee.exp) &&
- (is.mantissa == lim->ieee.mantissa)) {
- *vsp = lim->s;
- goto doneit;
- }
- }
- vsp->exp = is.exp - IEEE_SNG_BIAS + VAX_SNG_BIAS;
- vsp->mantissa2 = is.mantissa;
- vsp->mantissa1 = (is.mantissa >> 16);
- doneit:
- vsp->sign = is.sign;
- return (TRUE);
-#else
- if (sizeof(float) == sizeof(long))
- return (XDR_GETLONG(xdrs, (long *)fp));
- else if (sizeof(float) == sizeof(int)) {
- long tmp;
- if (XDR_GETLONG(xdrs, &tmp)) {
- *(int *)fp = tmp;
- return (TRUE);
- }
- }
- break;
-#endif
-
- case XDR_FREE:
- return (TRUE);
- }
- return (FALSE);
-}
-
-/*
- * This routine works on Suns (Sky / 68000's) and Vaxen.
- */
-
-#ifdef vax
-/* What IEEE double precision floating point looks like on a Vax */
-struct ieee_double {
- unsigned int mantissa1 : 20;
- unsigned int exp : 11;
- unsigned int sign : 1;
- unsigned int mantissa2 : 32;
-};
-
-/* Vax double precision floating point */
-struct vax_double {
- unsigned int mantissa1 : 7;
- unsigned int exp : 8;
- unsigned int sign : 1;
- unsigned int mantissa2 : 16;
- unsigned int mantissa3 : 16;
- unsigned int mantissa4 : 16;
-};
-
-#define VAX_DBL_BIAS 0x81
-#define IEEE_DBL_BIAS 0x3ff
-#define MASK(nbits) ((1 << nbits) - 1)
-
-static struct dbl_limits {
- struct vax_double d;
- struct ieee_double ieee;
-} dbl_limits[2] = {
- {{ 0x7f, 0xff, 0x0, 0xffff, 0xffff, 0xffff }, /* Max Vax */
- { 0x0, 0x7ff, 0x0, 0x0 }}, /* Max IEEE */
- {{ 0x0, 0x0, 0x0, 0x0, 0x0, 0x0}, /* Min Vax */
- { 0x0, 0x0, 0x0, 0x0 }} /* Min IEEE */
-};
-
-#endif /* vax */
-
-
-bool_t
-xdr_double(xdrs, dp)
- XDR *xdrs;
- double *dp;
-{
-#ifdef vax
- struct ieee_double id;
- struct vax_double vd;
- register struct dbl_limits *lim;
- int i;
-#endif
-
- switch (xdrs->x_op) {
-
- case XDR_ENCODE:
-#ifdef vax
- vd = *((struct vax_double *)dp);
- for (i = 0, lim = dbl_limits;
- i < sizeof(dbl_limits)/sizeof(struct dbl_limits);
- i++, lim++) {
- if ((vd.mantissa4 == lim->d.mantissa4) &&
- (vd.mantissa3 == lim->d.mantissa3) &&
- (vd.mantissa2 == lim->d.mantissa2) &&
- (vd.mantissa1 == lim->d.mantissa1) &&
- (vd.exp == lim->d.exp)) {
- id = lim->ieee;
- goto shipit;
- }
- }
- id.exp = vd.exp - VAX_DBL_BIAS + IEEE_DBL_BIAS;
- id.mantissa1 = (vd.mantissa1 << 13) | (vd.mantissa2 >> 3);
- id.mantissa2 = ((vd.mantissa2 & MASK(3)) << 29) |
- (vd.mantissa3 << 13) |
- ((vd.mantissa4 >> 3) & MASK(13));
- shipit:
- id.sign = vd.sign;
- dp = (double *)&id;
-#endif
- if (2*sizeof(long) == sizeof(double)) {
- long *lp = (long *)dp;
- return (XDR_PUTLONG(xdrs, lp+!LSW) &&
- XDR_PUTLONG(xdrs, lp+LSW));
- } else if (2*sizeof(int) == sizeof(double)) {
- int *ip = (int *)dp;
- long tmp[2];
- tmp[0] = ip[!LSW];
- tmp[1] = ip[LSW];
- return (XDR_PUTLONG(xdrs, tmp) &&
- XDR_PUTLONG(xdrs, tmp+1));
- }
- break;
-
- case XDR_DECODE:
-#ifdef vax
- lp = (long *)&id;
- if (!XDR_GETLONG(xdrs, lp++) || !XDR_GETLONG(xdrs, lp))
- return (FALSE);
- for (i = 0, lim = dbl_limits;
- i < sizeof(dbl_limits)/sizeof(struct dbl_limits);
- i++, lim++) {
- if ((id.mantissa2 == lim->ieee.mantissa2) &&
- (id.mantissa1 == lim->ieee.mantissa1) &&
- (id.exp == lim->ieee.exp)) {
- vd = lim->d;
- goto doneit;
- }
- }
- vd.exp = id.exp - IEEE_DBL_BIAS + VAX_DBL_BIAS;
- vd.mantissa1 = (id.mantissa1 >> 13);
- vd.mantissa2 = ((id.mantissa1 & MASK(13)) << 3) |
- (id.mantissa2 >> 29);
- vd.mantissa3 = (id.mantissa2 >> 13);
- vd.mantissa4 = (id.mantissa2 << 3);
- doneit:
- vd.sign = id.sign;
- *dp = *((double *)&vd);
- return (TRUE);
-#else
- if (2*sizeof(long) == sizeof(double)) {
- long *lp = (long *)dp;
- return (XDR_GETLONG(xdrs, lp+!LSW) &&
- XDR_GETLONG(xdrs, lp+LSW));
- } else if (2*sizeof(int) == sizeof(double)) {
- int *ip = (int *)dp;
- long tmp[2];
- if (XDR_GETLONG(xdrs, tmp+!LSW) &&
- XDR_GETLONG(xdrs, tmp+LSW)) {
- ip[0] = tmp[0];
- ip[1] = tmp[1];
- return (TRUE);
- }
- }
- break;
-#endif
-
- case XDR_FREE:
- return (TRUE);
- }
- return (FALSE);
-}
+++ /dev/null
-/*
- * Sun RPC is a product of Sun Microsystems, Inc. and is provided for
- * unrestricted use provided that this legend is included on all tape
- * media and as a part of the software program in whole or part. Users
- * may copy or modify Sun RPC without charge, but are not authorized
- * to license or distribute it to anyone else except as part of a product or
- * program developed by the user.
- *
- * SUN RPC IS PROVIDED AS IS WITH NO WARRANTIES OF ANY KIND INCLUDING THE
- * WARRANTIES OF DESIGN, MERCHANTIBILITY AND FITNESS FOR A PARTICULAR
- * PURPOSE, OR ARISING FROM A COURSE OF DEALING, USAGE OR TRADE PRACTICE.
- *
- * Sun RPC is provided with no support and without any obligation on the
- * part of Sun Microsystems, Inc. to assist in its use, correction,
- * modification or enhancement.
- *
- * SUN MICROSYSTEMS, INC. SHALL HAVE NO LIABILITY WITH RESPECT TO THE
- * INFRINGEMENT OF COPYRIGHTS, TRADE SECRETS OR ANY PATENTS BY SUN RPC
- * OR ANY PART THEREOF.
- *
- * In no event will Sun Microsystems, Inc. be liable for any lost revenue
- * or profits or other special, indirect and consequential damages, even if
- * Sun has been advised of the possibility of such damages.
- *
- * Sun Microsystems, Inc.
- * 2550 Garcia Avenue
- * Mountain View, California 94043
- */
-
-/*
- * xdr_stdio.c, XDR implementation on standard i/o file.
- *
- * Copyright (C) 1984, Sun Microsystems, Inc.
- *
- * This set of routines implements a XDR on a stdio stream.
- * XDR_ENCODE serializes onto the stream, XDR_DECODE de-serializes
- * from the stream.
- */
-
-#include "types.h"
-#include <stdio.h>
-#include "xdr.h"
-
-#ifdef USE_IN_LIBIO
-# include <libio/iolibio.h>
-# define fflush(s) INTUSE(_IO_fflush) (s)
-# define fread(p, m, n, s) INTUSE(_IO_fread) (p, m, n, s)
-# define ftell(s) INTUSE(_IO_ftell) (s)
-# define fwrite(p, m, n, s) INTUSE(_IO_fwrite) (p, m, n, s)
-#endif
-
-static bool_t xdrstdio_getlong (XDR *, long *);
-static bool_t xdrstdio_putlong (XDR *, const long *);
-static bool_t xdrstdio_getbytes (XDR *, caddr_t, u_int);
-static bool_t xdrstdio_putbytes (XDR *, const char *, u_int);
-static u_int xdrstdio_getpos (const XDR *);
-static bool_t xdrstdio_setpos (XDR *, u_int);
-static int32_t *xdrstdio_inline (XDR *, u_int);
-static void xdrstdio_destroy (XDR *);
-static bool_t xdrstdio_getint32 (XDR *, int32_t *);
-static bool_t xdrstdio_putint32 (XDR *, const int32_t *);
-
-/*
- * Ops vector for stdio type XDR
- */
-static const struct xdr_ops xdrstdio_ops =
-{
- xdrstdio_getlong, /* deserialize a long int */
- xdrstdio_putlong, /* serialize a long int */
- xdrstdio_getbytes, /* deserialize counted bytes */
- xdrstdio_putbytes, /* serialize counted bytes */
- xdrstdio_getpos, /* get offset in the stream */
- xdrstdio_setpos, /* set offset in the stream */
- xdrstdio_inline, /* prime stream for inline macros */
- xdrstdio_destroy, /* destroy stream */
- xdrstdio_getint32, /* deserialize a int */
- xdrstdio_putint32 /* serialize a int */
-};
-
-/*
- * Initialize a stdio xdr stream.
- * Sets the xdr stream handle xdrs for use on the stream file.
- * Operation flag is set to op.
- */
-void
-xdrstdio_create (XDR *xdrs, FILE *file, enum xdr_op op)
-{
- xdrs->x_op = op;
- /* We have to add the const since the `struct xdr_ops' in `struct XDR'
- is not `const'. */
- xdrs->x_ops = (struct xdr_ops *) &xdrstdio_ops;
- xdrs->x_private = (caddr_t) file;
- xdrs->x_handy = 0;
- xdrs->x_base = 0;
-}
-
-/*
- * Destroy a stdio xdr stream.
- * Cleans up the xdr stream handle xdrs previously set up by xdrstdio_create.
- */
-static void
-xdrstdio_destroy (XDR *xdrs)
-{
- (void) fflush ((FILE *) xdrs->x_private);
- /* xx should we close the file ?? */
-};
-
-static bool_t
-xdrstdio_getlong (XDR *xdrs, long *lp)
-{
- u_int32_t mycopy;
-
- if (fread ((caddr_t) &mycopy, 4, 1, (FILE *) xdrs->x_private) != 1)
- return FALSE;
- *lp = (long) ntohl (mycopy);
- return TRUE;
-}
-
-static bool_t
-xdrstdio_putlong (XDR *xdrs, const long *lp)
-{
- int32_t mycopy = htonl ((u_int32_t) *lp);
-
- if (fwrite ((caddr_t) &mycopy, 4, 1, (FILE *) xdrs->x_private) != 1)
- return FALSE;
- return TRUE;
-}
-
-static bool_t
-xdrstdio_getbytes (XDR *xdrs, const caddr_t addr, u_int len)
-{
- if ((len != 0) && (fread (addr, (int) len, 1,
- (FILE *) xdrs->x_private) != 1))
- return FALSE;
- return TRUE;
-}
-
-static bool_t
-xdrstdio_putbytes (XDR *xdrs, const char *addr, u_int len)
-{
- if ((len != 0) && (fwrite (addr, (int) len, 1,
- (FILE *) xdrs->x_private) != 1))
- return FALSE;
- return TRUE;
-}
-
-static u_int
-xdrstdio_getpos (const XDR *xdrs)
-{
- return (u_int) ftell ((FILE *) xdrs->x_private);
-}
-
-static bool_t
-xdrstdio_setpos (XDR *xdrs, u_int pos)
-{
- return fseek ((FILE *) xdrs->x_private, (long) pos, 0) < 0 ? FALSE : TRUE;
-}
-
-static int32_t *
-xdrstdio_inline (XDR *xdrs, u_int len)
-{
- /*
- * Must do some work to implement this: must insure
- * enough data in the underlying stdio buffer,
- * that the buffer is aligned so that we can indirect through a
- * long *, and stuff this pointer in xdrs->x_buf. Doing
- * a fread or fwrite to a scratch buffer would defeat
- * most of the gains to be had here and require storage
- * management on this buffer, so we don't do this.
- */
- return NULL;
-}
-
-static bool_t
-xdrstdio_getint32 (XDR *xdrs, int32_t *ip)
-{
- int32_t mycopy;
-
- if (fread ((caddr_t) &mycopy, 4, 1, (FILE *) xdrs->x_private) != 1)
- return FALSE;
- *ip = ntohl (mycopy);
- return TRUE;
-}
-
-static bool_t
-xdrstdio_putint32 (XDR *xdrs, const int32_t *ip)
-{
- int32_t mycopy = htonl (*ip);
-
- ip = &mycopy;
- if (fwrite ((caddr_t) ip, 4, 1, (FILE *) xdrs->x_private) != 1)
- return FALSE;
- return TRUE;
-}
-
-/* libc_hidden_def (xdrstdio_create) */
+++ /dev/null
-/*_________________________________________________________________
- |
- | xdrf.h - include file for C routines that want to use the
- | functions below.
-*/
-
-int xdropen(XDR *xdrs, const char *filename, const char *type);
-int xdrclose(XDR *xdrs) ;
-int xdr3dfcoord(XDR *xdrs, float *fp, int *size, float *precision) ;
-
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