6/11/2012 by Adam
authorAdam Liwo <adam@matrix.chem.cornell.edu>
Mon, 11 Jun 2012 14:25:25 +0000 (10:25 -0400)
committerAdam Liwo <adam@matrix.chem.cornell.edu>
Mon, 11 Jun 2012 14:25:25 +0000 (10:25 -0400)
commitd2820032977a452e246daf616d04f0da25cb6e51
treed293382b28691d8cb7c270e1cc07d92ec6e23ee0
parent68923111d906210c48e2e03a97598fecd3ebd240
6/11/2012 by Adam
xdrf-m corrected (list of arguments); changes in manual required!
199 files changed:
bin/unres/CSA/unres_csa-CASP3_ifort_mpich-1.2.7p1.exe
bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe
bin/xdrf2pdb-m-mult [new file with mode: 0755]
examples/unres/CSA/CASP3/ENERGY/protA.out_LJ000
examples/unres/CSA/CASP3/ENERGY/protA_LJ000.int
examples/unres/CSA/CASP3/ENERGY/protA_LJ000.pdb
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y.seq [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD.inp
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD.intin [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD.out_GB000 [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB000.int [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB000.mol2 [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB000.pdb [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB000.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB001.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB002.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB003.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB004.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB005.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB006.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB007.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB008.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB009.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB010.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB011.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB012.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB013.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB014.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB015.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB016.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB017.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB018.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB019.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB020.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB021.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB022.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB023.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB024.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB025.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB026.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB027.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB028.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB029.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB030.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_GB031.stat [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_MD000.cx [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_MD000_002.pdb [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/1L2Y_MREMD_mremd.rst [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/PI8900 [new file with mode: 0644]
examples/unres/MD/ff_1l2y_1le1/MREMD/unres.csh
examples/unres/MD/ff_gab/ala10-cx_MD.cx [deleted file]
examples/unres/MD/ff_gab/ala10-cx_MD.cx-safe [new file with mode: 0644]
examples/unres/MD/ff_gab/ala10.seq
examples/unres/MD/ff_gab/ala10MD.ang [new file with mode: 0644]
examples/unres/MD/ff_gab/ala10MD.cx [new file with mode: 0644]
source/unres/src_CSA/MP.o [new file with mode: 0644]
source/unres/src_CSA/TMscore_subroutine.o [new file with mode: 0644]
source/unres/src_CSA/arcos.o [new file with mode: 0644]
source/unres/src_CSA/banach.o [new file with mode: 0644]
source/unres/src_CSA/bank.o [new file with mode: 0644]
source/unres/src_CSA/cartder.o [new file with mode: 0644]
source/unres/src_CSA/cartprint.o [new file with mode: 0644]
source/unres/src_CSA/chainbuild.o [new file with mode: 0644]
source/unres/src_CSA/checkder_p.o [new file with mode: 0644]
source/unres/src_CSA/cinfo.o [new file with mode: 0644]
source/unres/src_CSA/contact.o [new file with mode: 0644]
source/unres/src_CSA/convert.o [new file with mode: 0644]
source/unres/src_CSA/cored.o [new file with mode: 0644]
source/unres/src_CSA/csa.o [new file with mode: 0644]
source/unres/src_CSA/dfa.o [new file with mode: 0644]
source/unres/src_CSA/diff12.o [new file with mode: 0644]
source/unres/src_CSA/distfit.o [new file with mode: 0644]
source/unres/src_CSA/djacob.o [new file with mode: 0644]
source/unres/src_CSA/econstr_local.o [new file with mode: 0644]
source/unres/src_CSA/elecont.o [new file with mode: 0644]
source/unres/src_CSA/energy_p_new_barrier.o [new file with mode: 0644]
source/unres/src_CSA/fitsq.o [new file with mode: 0644]
source/unres/src_CSA/gen_rand_conf.o [new file with mode: 0644]
source/unres/src_CSA/geomout_min.o [new file with mode: 0644]
source/unres/src_CSA/gradient_p.o [new file with mode: 0644]
source/unres/src_CSA/indexx.o [new file with mode: 0644]
source/unres/src_CSA/initialize_p.o [new file with mode: 0644]
source/unres/src_CSA/int_to_cart.o [new file with mode: 0644]
source/unres/src_CSA/intcartderiv.o [new file with mode: 0644]
source/unres/src_CSA/intcor.o [new file with mode: 0644]
source/unres/src_CSA/intlocal.o [new file with mode: 0644]
source/unres/src_CSA/local_move.o [new file with mode: 0644]
source/unres/src_CSA/matmult.o [new file with mode: 0644]
source/unres/src_CSA/minim_jlee.o [new file with mode: 0644]
source/unres/src_CSA/minim_mult.o [new file with mode: 0644]
source/unres/src_CSA/minimize_p.o [new file with mode: 0644]
source/unres/src_CSA/misc.o [new file with mode: 0644]
source/unres/src_CSA/newconf.o [new file with mode: 0644]
source/unres/src_CSA/parmread.o [new file with mode: 0644]
source/unres/src_CSA/pinorm.o [new file with mode: 0644]
source/unres/src_CSA/printmat.o [new file with mode: 0644]
source/unres/src_CSA/prng_32.o [new file with mode: 0644]
source/unres/src_CSA/ran.o [new file with mode: 0644]
source/unres/src_CSA/randgens.o [new file with mode: 0644]
source/unres/src_CSA/readpdb.o [new file with mode: 0644]
source/unres/src_CSA/readrtns_csa.F
source/unres/src_CSA/readrtns_csa.o [new file with mode: 0644]
source/unres/src_CSA/rescode.o [new file with mode: 0644]
source/unres/src_CSA/rmdd.o [new file with mode: 0644]
source/unres/src_CSA/rmsd.o [new file with mode: 0644]
source/unres/src_CSA/sc_move.o [new file with mode: 0644]
source/unres/src_CSA/shift.o [new file with mode: 0644]
source/unres/src_CSA/sumsld.o [new file with mode: 0644]
source/unres/src_CSA/test.o [new file with mode: 0644]
source/unres/src_CSA/timing.o [new file with mode: 0644]
source/unres/src_CSA/together.o [new file with mode: 0644]
source/unres/src_CSA/unres_csa.o [new file with mode: 0644]
source/unres/src_MD/MD_A-MTS.o [new file with mode: 0644]
source/unres/src_MD/MP.o [new file with mode: 0644]
source/unres/src_MD/MREMD.o [new file with mode: 0644]
source/unres/src_MD/add.o [new file with mode: 0644]
source/unres/src_MD/arcos.o [new file with mode: 0644]
source/unres/src_MD/banach.o [new file with mode: 0644]
source/unres/src_MD/blas.o [new file with mode: 0644]
source/unres/src_MD/bond_move.o [new file with mode: 0644]
source/unres/src_MD/cartder.o [new file with mode: 0644]
source/unres/src_MD/cartprint.o [new file with mode: 0644]
source/unres/src_MD/chainbuild.o [new file with mode: 0644]
source/unres/src_MD/check_bond.o [new file with mode: 0644]
source/unres/src_MD/check_sc_distr.o [new file with mode: 0644]
source/unres/src_MD/checkder_p.o [new file with mode: 0644]
source/unres/src_MD/cinfo.f
source/unres/src_MD/cinfo.o [new file with mode: 0644]
source/unres/src_MD/compare_s1.o [new file with mode: 0644]
source/unres/src_MD/compinfo [new file with mode: 0755]
source/unres/src_MD/contact.o [new file with mode: 0644]
source/unres/src_MD/convert.o [new file with mode: 0644]
source/unres/src_MD/cored.o [new file with mode: 0644]
source/unres/src_MD/dihed_cons.o [new file with mode: 0644]
source/unres/src_MD/djacob.o [new file with mode: 0644]
source/unres/src_MD/econstr_local.o [new file with mode: 0644]
source/unres/src_MD/eigen.o [new file with mode: 0644]
source/unres/src_MD/elecont.o [new file with mode: 0644]
source/unres/src_MD/energy_p_new-sep_barrier.o [new file with mode: 0644]
source/unres/src_MD/energy_p_new_barrier.o [new file with mode: 0644]
source/unres/src_MD/energy_split-sep.o [new file with mode: 0644]
source/unres/src_MD/entmcm.o [new file with mode: 0644]
source/unres/src_MD/fitsq.o [new file with mode: 0644]
source/unres/src_MD/gauss.o [new file with mode: 0644]
source/unres/src_MD/gen_rand_conf.o [new file with mode: 0644]
source/unres/src_MD/geomout.o [new file with mode: 0644]
source/unres/src_MD/gnmr1.o [new file with mode: 0644]
source/unres/src_MD/gradient_p.o [new file with mode: 0644]
source/unres/src_MD/initialize_p.o [new file with mode: 0644]
source/unres/src_MD/int_to_cart.o [new file with mode: 0644]
source/unres/src_MD/intcartderiv.o [new file with mode: 0644]
source/unres/src_MD/intcor.o [new file with mode: 0644]
source/unres/src_MD/intlocal.o [new file with mode: 0644]
source/unres/src_MD/kinetic_lesyng.o [new file with mode: 0644]
source/unres/src_MD/lagrangian_lesyng.o [new file with mode: 0644]
source/unres/src_MD/local_move.o [new file with mode: 0644]
source/unres/src_MD/map.o [new file with mode: 0644]
source/unres/src_MD/matmult.o [new file with mode: 0644]
source/unres/src_MD/mc.o [new file with mode: 0644]
source/unres/src_MD/mcm.o [new file with mode: 0644]
source/unres/src_MD/minim_mcmf.o [new file with mode: 0644]
source/unres/src_MD/minimize_p.o [new file with mode: 0644]
source/unres/src_MD/misc.o [new file with mode: 0644]
source/unres/src_MD/moments.o [new file with mode: 0644]
source/unres/src_MD/muca_md.o [new file with mode: 0644]
source/unres/src_MD/parmread.o [new file with mode: 0644]
source/unres/src_MD/pinorm.o [new file with mode: 0644]
source/unres/src_MD/printmat.o [new file with mode: 0644]
source/unres/src_MD/prng.o [new file with mode: 0644]
source/unres/src_MD/q_measure.o [new file with mode: 0644]
source/unres/src_MD/randgens.o [new file with mode: 0644]
source/unres/src_MD/rattle.o [new file with mode: 0644]
source/unres/src_MD/readpdb.o [new file with mode: 0644]
source/unres/src_MD/readrtns.o [new file with mode: 0644]
source/unres/src_MD/refsys.o [new file with mode: 0644]
source/unres/src_MD/regularize.o [new file with mode: 0644]
source/unres/src_MD/rescode.o [new file with mode: 0644]
source/unres/src_MD/rmdd.o [new file with mode: 0644]
source/unres/src_MD/rmsd.o [new file with mode: 0644]
source/unres/src_MD/sc_move.o [new file with mode: 0644]
source/unres/src_MD/sort.o [new file with mode: 0644]
source/unres/src_MD/stochfric.o [new file with mode: 0644]
source/unres/src_MD/sumsld.o [new file with mode: 0644]
source/unres/src_MD/surfatom.o [new file with mode: 0644]
source/unres/src_MD/test.o [new file with mode: 0644]
source/unres/src_MD/thread.o [new file with mode: 0644]
source/unres/src_MD/timing.o [new file with mode: 0644]
source/unres/src_MD/unres.o [new file with mode: 0644]
source/unres/src_MD/xdrf/ftocstr.o [new file with mode: 0644]
source/unres/src_MD/xdrf/libxdrf.a [new file with mode: 0644]
source/unres/src_MD/xdrf/libxdrf.o [new file with mode: 0644]
source/xdrfpdb/src-M/Makefile
source/xdrfpdb/src-M/geomout.o [new file with mode: 0644]
source/xdrfpdb/src-M/misc.o [new file with mode: 0644]
source/xdrfpdb/src-M/nazwy.o [new file with mode: 0644]
source/xdrfpdb/src-M/rescode.o [new file with mode: 0644]
source/xdrfpdb/src-M/xdrf
source/xdrfpdb/src-M/xdrf2pdb-m.F
source/xdrfpdb/src-M/xdrf2pdb-m.o [new file with mode: 0644]