& +aa_aq(itypi,itypj)*(2.0d0-sslipi-sslipj)/2.0d0
bb=bb_lip(itypi,itypj)*(sslipi+sslipj)/2.0d0
& +bb_aq(itypi,itypj)*(2.0d0-sslipi-sslipj)/2.0d0
+C write(iout,*) "tu,", i,j,aa_lip(itypi,itypj),bb_lip(itypi,itypj)
C if (aa.ne.aa_aq(itypi,itypj)) write(63,'(2e10.5)')
C &(aa-aa_aq(itypi,itypj)),(bb-bb_aq(itypi,itypj))
C if (ssgradlipj.gt.0.0d0) print *,"??WTF??"
& +bb_aq(itypi,itypj)*(2.0d0-sslipi-sslipj)/2.0d0
C if (aa.ne.aa_aq(itypi,itypj)) write(63,'2e10.5')
C &(aa-aa_aq(itypi,itypj)),(bb-bb_aq(itypi,itypj))
+C write(iout,*) "tu,", i,j,aa,bb,aa_lip(itypi,itypj),sslipi,sslipj
dist_init=(xj-xi)**2+(yj-yi)**2+(zj-zi)**2
xj_safe=xj
yj_safe=yj
if (itype(i-1).eq.ntyp1 .or. itype(i).eq.ntyp1) then
C YES vbldpDUM is the equlibrium length of spring for Dummy atom
diff = vbld(i)-vbldpDUM
+ if (energy_dec) write(iout,*) "dum_bond",i,diff
else
C NO vbldp0 is the equlibrium lenght of spring for peptide group
diff = vbld(i)-vbldp0
c write (iout,'(i5,3f10.5)') i,(gradb(j,i-1),j=1,3)
c endif
enddo
+
estr=0.5d0*AKP*estr+estr1
c
c 09/18/07 AL: multimodal bond potential based on AM1 CA-SC PMF's included
if (itype(i).eq.ntyp1) cycle
positi=(mod(((c(3,i)+c(3,i+1))/2.0d0),boxzsize))
- if (positi.le.0) positi=positi+boxzsize
+ if (positi.le.0.0) positi=positi+boxzsize
C print *,i
C first for peptide groups
c for each residue check if it is in lipid or lipid water border area