! and output level.
!... energy_dec = .true. means print energy decomposition matrix
integer modecalc,iscode,indpdb,indback,indphi,iranconf,icheckgrad,
- & inprint,i2ndstr,mucadyn,constr_dist,symetr,AFMlog,selfguide,
+ & inprint,i2ndstr,mucadyn,constr_dist,symetr,npermut,
+ & AFMlog,selfguide,
& shield_mode,tor_mode,tubelog,constr_homology,homol_nset,
& iprint
!... minim = .true. means DO minimization.
& unres_pdb,out_cart,out_int,vdisulf,searchsc,lmuca,dccart,mucadyn,
& extconf,out1file,gmatout,selfguide,AFMlog,shield_mode,tor_mode,
& tubelog,constr_dist,gnorm_check,gradout,split_ene,
- & with_theta_constr,with_dihed_constr,symetr,usampl,loc_qlike,
+ & with_theta_constr,with_dihed_constr,symetr,npermut,usampl,loc_
+ & qlike,
& adaptive,constr_homology,homol_nset,read2sigma,start_from_model,
& read_homol_frag,out_template_coord,out_template_restr