Merge branch 'prerelease-3.2.1' into czarek

[unres.git] / examples / unres / CSA / GAB / global / restrained / jpred_prediction / README

diff --git a/examples/unres/CSA/GAB/global/restrained/jpred_prediction/README b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/README
new file mode 100644 (file)
index 0000000..1c9d5ea
--- /dev/null
+++ b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/README
@@ -0,0 +1,20 @@
+Filename                        Description
+--------                        -----------
+jp_fSt_H_1.align                PSIBLAST alignment with gaps and redundancy removed in FASTA format
+jp_fSt_H_1.als                  Alscript command file. Used to generate PS/PDF outputjp_fSt_H_1.blast.gz             PSIBLAST output (compressed)
+jp_fSt_H_1.coils.csv            The output from coils in CSV format
+jp_fSt_H_1.coilseq.lupas_14     The output from coils using a window length of 14
+jp_fSt_H_1.coilseq.lupas_21     The output from coils using a window length of 21
+jp_fSt_H_1.coilseq.lupas_28     The output from coils using a window length of 28
+jp_fSt_H_1.concise              The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment
+jp_fSt_H_1.concise.blc          A BLC file of the prediction and alignment
+jp_fSt_H_1.concise.pdf          A PDF file of the prediction and alignment
+jp_fSt_H_1.concise.ps           A PostScript file of the prediction and alignment
+jp_fSt_H_1.fasta                Input query sequence in FASTA format
+jp_fSt_H_1.hmm                  The HHMer2 profile of the alignment
+jp_fSt_H_1.html                 A HTML file of the prediction and alignment
+jp_fSt_H_1.jalview              A Jalview annotation file to be read in with the .align file to view the predictions in Jalview
+jp_fSt_H_1.jnet                 The output from Jnet
+jp_fSt_H_1.profile              PSIBLAST profile
+jp_fSt_H_1.seq                  Your sequence
+jp_fSt_H_1.simple.html          The brief HTML output of the query sequence and prediction only