Merge branch 'devel' into feature-ga

[unres.git] / doc / XDRFPDB.TXT

diff --git a/doc/XDRFPDB.TXT b/doc/XDRFPDB.TXT
index 988665f..f266720 100644 (file)
--- a/doc/XDRFPDB.TXT
+++ b/doc/XDRFPDB.TXT
@@ -102,15 +102,20 @@ pdbfile (cxfile with extension changed from cx to pdb) - the output PDB file
 4.2 XDRF2PDB-M
 
 Command line syntax:
-xdrf2pdb-m one/three seqfile cxfile [ntraj] [itraj]
+xdrf2pdb-m xdrf2pdb-m one/three seqfile cxfile ntraj itraj [pdbfile] [freq]
 
 cxfile - the name of the compressed trajectory file from an UNRES/MREMD run
          carried out with TRAJ1FILE (conformations from all trajectories
          output to a single file)
       
-ntraj (1) - number of trajectories in the multi-trajectory run
+ntraj - number of trajectories in the multi-trajectory run
 
-itraj (1) - the number of trajectory to be extracted
+itraj - the number of trajectory to be extracted
+
+pdbfile - (cxfile-without-cx-itraj.pdb) the name of file to write the Cartesian 
+        coordinates of trajectory itraj to
+
+freq (1) - output frequency
 
 The xdrf2pdb program to convert cx files to pdb files