doc update

[unres.git] / doc / 3.2.1 / latex / clusterman.tex

diff --git a/doc/3.2.1/latex/clusterman.tex b/doc/3.2.1/latex/clusterman.tex
index 65b38af..08755e3 100644 (file)
--- a/doc/3.2.1/latex/clusterman.tex
+++ b/doc/3.2.1/latex/clusterman.tex
@@ -353,6 +353,13 @@ Instead of IOPT=1, MINTREE and instead of IOPT=2 MINVAR can be specified
 
 \item{PUNCH\_DIST} -- if present, the upper-triangle of the distance matrix will be 
     printed to a file.
+
+\item{NSAXS} -- number of distance-distribution bins corresponding to to SAXS
+restraints (to be included in further section of the input).
+
+\item{SCAL\_RAD} -- scaling factor of sidechain radii in calculating Gaussian-smoothed distance distribution.
+
+\item{BOXX, BOXY, BOXZ} - periodic-box dimensions.
 \end{description}
 
 \subsubsection{Energy-term weights and parameter files}
@@ -398,6 +405,8 @@ Instead of IOPT=1, MINTREE and instead of IOPT=2 MINVAR can be specified
 
 \item{SCAL14} (0.4) -- scaling factor of 1,4-interactions
 
+\item{WSAXS=number} (real) (1.0d0) -- weight of the maximum-likelihood SAXS-restraint term.
+
 \end{description}
 
 \subsubsection{Molecule information}