2 # CMake project file for cluster analysis from WHAM for oligomeric proteins
5 enable_language (Fortran C)
7 #================================
8 # Set source file lists
9 #================================
10 set(UNRES_CLUSTER_WHAM_M_SRC0
46 set(UNRES_CLUSTER_WHAM_M_PP_SRC
61 #================================================
62 # Set comipiler flags for different sourcefiles
63 #================================================
64 if (Fortran_COMPILER_NAME STREQUAL "ifort")
65 set(FFLAGS0 "-ip -w -I. -I${CMAKE_CURRENT_SOURCE_DIR}/include_unres" )
66 elseif (Fortran_COMPILER_NAME STREQUAL "gfortran")
67 set(FFLAGS0 "-std=legacy -I. -I${CMAKE_CURRENT_SOURCE_DIR}/include_unres" )
68 endif (Fortran_COMPILER_NAME STREQUAL "ifort")
70 # Add MPI compiler flags
72 set(FFLAGS0 "${FFLAGS0} -I${MPIF_INCLUDE_DIRECTORIES}")
75 set_property(SOURCE ${UNRES_CLUSTER_WHAM_M_SRC0} PROPERTY COMPILE_FLAGS ${FFLAGS0} )
77 #=========================================
78 # Settings for GAB force field
79 #=========================================
80 if(UNRES_MD_FF STREQUAL "GAB" )
81 # set preprocesor flags
82 set(CPPFLAGS "PROCOR -DSPLITELE -DCRYST_BOND -DCRYST_THETA -DCRYST_SC -DSCCORPDB" )
84 #=========================================
85 # Settings for E0LL2Y force field
86 #=========================================
87 elseif(UNRES_MD_FF STREQUAL "E0LL2Y")
88 # set preprocesor flags
89 set(CPPFLAGS "PROCOR -DSPLITELE -DSCCORPDB" )
90 endif(UNRES_MD_FF STREQUAL "GAB")
93 if (Fortran_COMPILER_NAME STREQUAL "ifort")
94 # Add ifort preprocessor flags
95 set(CPPFLAGS "${CPPFLAGS} -DPGI")
96 elseif (Fortran_COMPILER_NAME STREQUAL "f95")
97 # Add new gfortran flags
98 set(CPPFLAGS "${CPPFLAGS} -DG77")
99 elseif (Fortran_COMPILER_NAME STREQUAL "gfortran")
100 # Add old gfortran flags
101 set(CPPFLAGS "${CPPFLAGS} -DG77")
102 endif (Fortran_COMPILER_NAME STREQUAL "ifort")
105 #=========================================
106 # System specific flags
107 #=========================================
108 if(${CMAKE_SYSTEM_NAME} MATCHES "Linux")
109 set(CPPFLAGS "${CPPFLAGS} -DLINUX")
110 endif(${CMAKE_SYSTEM_NAME} MATCHES "Linux")
112 #=========================================
113 # Add MPI preprocessor flags
114 #=========================================
116 set(CPPFLAGS "${CPPFLAGS} -DMP -DMPI")
117 endif(UNRES_WITH_MPI)
120 #=========================================
121 # Apply preprocesor flags to *.F files
122 #=========================================
123 set_property(SOURCE ${UNRES_CLUSTER_WHAM_M_PP_SRC} PROPERTY COMPILE_DEFINITIONS ${CPPFLAGS} )
125 set_property(SOURCE proc_proc.c PROPERTY COMPILE_DEFINITIONS "LINUX -DPGI" )
127 #========================================
128 # Setting binary name
129 #========================================
130 set(UNRES_CLUSTER_WHAM_M_BIN "unres_clustMD.exe")
132 #=========================================
133 # cinfo.f stupid workaround for cmake
135 #=========================================
136 #set_property(SOURCE compinfo.c PROPERTY CMAKE_C_FLAGS "-c" )
137 #add_executable(compinfo-wham-m compinfo.c)
138 #set_target_properties(compinfo-wham-m PROPERTIES OUTPUT_NAME compinfo)
140 #set(UNRES_CINFO_DIR "${CMAKE_CURRENT_BINARY_DIR}" )
141 #add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f
142 # COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/cinfo.f ${CMAKE_CURRENT_BINARY_DIR}/cinfo.f
143 # COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/COMMON.IOUNITS ${CMAKE_CURRENT_BINARY_DIR}/COMMON.IOUNITS
144 # COMMAND ${CMAKE_CURRENT_BINARY_DIR}/compinfo | true
145 # DEPENDS compinfo-wham-m )
146 #set_property(SOURCE ${UNRES_CINFO_DIR}/cinfo.f PROPERTY COMPILE_FLAGS ${FFLAGS0} )
148 #=========================================
149 # Set full unres CLUSTER sources
150 #=========================================
151 set(UNRES_CLUSTER_WHAM_M_SRCS ${UNRES_CLUSTER_WHAM_M_SRC0} proc_proc.c)
153 #=========================================
155 #=========================================
156 add_executable(UNRES_CLUSTER_WHAM_M_BIN ${UNRES_CLUSTER_WHAM_M_SRCS} )
157 set_target_properties(UNRES_CLUSTER_WHAM_M_BIN PROPERTIES OUTPUT_NAME ${UNRES_CLUSTER_WHAM_M_BIN})
159 #=========================================
161 #=========================================
162 # link MPI library (libmpich.a)
164 target_link_libraries( UNRES_CLUSTER_WHAM_M_BIN ${MPIF_LIBRARIES} )
165 endif(UNRES_WITH_MPI)
167 target_link_libraries( UNRES_CLUSTER_WHAM_M_BIN xdrf )
169 #=========================================
171 #=========================================
173 #-- Copy all the data files from the test directory into the source directory
174 #SET(UNRES_TEST_FILES
178 #FOREACH (UNRES_TEST_FILE ${UNRES_TEST_FILES})
179 # SET (unres_test_dest "${CMAKE_CURRENT_BINARY_DIR}/${UNRES_TEST_FILE}")
180 # MESSAGE (STATUS " Copying ${UNRES_TEST_FILE} from ${CMAKE_SOURCE_DIR}/examples/unres/MD/ff_gab/${UNRES_TEST_FILE} to ${unres_test_dest}")
181 # ADD_CUSTOM_COMMAND (
182 # TARGET ${UNRES_BIN}
184 # COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_SOURCE_DIR}/examples/unres/MD/ff_gab/${UNRES_TEST_FILE} ${unres_test_dest}
186 #ENDFOREACH (UNRES_TEST_FILE ${UNRES_TEST_FILES})
188 #=========================================
189 # Generate data test files
190 #=========================================
192 #=========================================
194 #FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/test_single_ala.sh
198 #-----------------------------------------------------------------------------
199 #UNRES_BIN=./${UNRES_BIN}
200 #-----------------------------------------------------------------------------
201 #DD=${CMAKE_SOURCE_DIR}/PARAM
202 #export BONDPAR=$DD/bond.parm
203 #export THETPAR=$DD/thetaml.5parm
204 #export ROTPAR=$DD/scgauss.parm
205 #export TORPAR=$DD/torsion_631Gdp.parm
206 #export TORDPAR=$DD/torsion_double_631Gdp.parm
207 #export ELEPAR=$DD/electr_631Gdp.parm
208 #export SIDEPAR=$DD/sc_GB_opt.1gab_3S_qclass5no310-shan2-sc-16-10-8k
209 #export FOURIER=$DD/fourier_opt.parm.1igd_hc_iter3_3
210 #export SCPPAR=$DD/scp.parm
211 #export SCCORPAR=$DD/rotcorr_AM1.parm
212 #export PATTERN=$DD/patterns.cart
213 #-----------------------------------------------------------------------------
217 #=========================================
219 #=========================================
221 #file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/ala10.inp
223 #SEED=-1111333 MD ONE_LETTER rescale_mode=2 PDBOUT
224 #nstep=15000 ntwe=100 ntwx=1000 dt=0.1 lang=0 tbf t_bath=300 damax=1.0 &
225 #reset_moment=1000 reset_vel=1000 MDPDB
226 #WLONG=1.35279 WSCP=1.59304 WELEC=0.71534 WBOND=1.00000 WANG=1.13873 &
227 #WSCLOC=0.16258 WTOR=1.98599 WTORD=1.57069 WCORRH=0.42887 WCORR5=0.00000 &
228 #WCORR6=0.00000 WEL_LOC=0.16036 WTURN3=1.68722 WTURN4=0.66230 WTURN6=0.00000 &
229 #WVDWPP=0.11371 WHPB=1.00000 &
230 #CUTOFF=7.00000 WCORR4=0.00000
235 # 90.0000 90.0000 90.0000 90.000 90.000 90.000 90.000 90.000
237 # 180.0000 180.0000 180.0000 180.000 180.000 180.000 180.000 180.000
239 # 110.0000 110.0000 110.0000 100.000 110.000 100.000 110.000 110.000
241 # -120.0000 -120.0000 -120.000 -120.000 -120.000 -120.000 -120.000 -120.000
242 # -120.0000 -120.0000
248 #if(NOT UNRES_WITH_MPI)
250 # add_test(NAME UNRES_MD_Ala10 COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_single_ala.sh )
252 #endif(NOT UNRES_WITH_MPI)