<ul>
<li> <a href="http://pymol.org"> pymol </a>
<li> convpdb.pl from <a href="http://www.mmtsb.org/">MMTSB Tool Set</a>
-<li> tleap, sander and ambpdb from <a href="ambermd.org">Amber Tools</a>
+<li> tleap, sander and ambpdb from <a href="http://ambermd.org">Amber Tools</a>
<li> <a href="http://cssb.biology.gatech.edu/PULCHRA"> pulchra </a>
<li> <a href="http://dunbrack.fccc.edu/scwrl4/"> Scwrl4</a>
<li> <a href="https://zhanglab.ccmb.med.umich.edu/TM-score/">tmscore</a>
<li>
TER records in PDB file are read to recognize chain's ends.
<li>
-Distance distribution (from SAXS experiment) cam be added for MREMD
-simulations in advanced mode. First column distance, second column
+Distance distribution (from SAXS experiment) can be added for MREMD
+simulation in advanced mode. First column distance, second column
distribution function value (separated by space).
</ol>
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