include "COMMON.CONTROL"
include "COMMON.ENERGIES"
include "COMMON.SPLITELE"
+ include "COMMON.SBRIDGE"
+ include "COMMON.SHIELD"
character*800 controlcard
integer i,j,k,ii,n_ene_found
integer ind,itype1,itype2,itypf,itypsc,itypp
character*16 ucase
character*16 key
external ucase
-
+ double precision pi
call card_concat(controlcard,.true.)
call readi(controlcard,"N_ENE",n_ene,max_ene)
if (n_ene.gt.max_ene) then
call reada(controlcard,'BOXX',boxxsize,100.0d0)
call reada(controlcard,'BOXY',boxysize,100.0d0)
call reada(controlcard,'BOXZ',boxzsize,100.0d0)
+ call readi(controlcard,'TUBEMOD',tubelog,0)
+ write (iout,*) TUBElog,"TUBEMODE"
+ call readi(controlcard,'GENCONSTR',genconstr,0)
+
c Cutoff range for interactions
call reada(controlcard,"R_CUT",r_cut,15.0d0)
call reada(controlcard,"LAMBDA",rlamb,0.3d0)
+ call reada(controlcard,"LIPTHICK",lipthick,0.0d0)
+ call reada(controlcard,"LIPAQBUF",lipbufthick,0.0d0)
+ if (lipthick.gt.0.0d0) then
+ bordliptop=(boxzsize+lipthick)/2.0
+ bordlipbot=bordliptop-lipthick
+C endif
+ if ((bordliptop.gt.boxzsize).or.(bordlipbot.lt.0.0))
+ & write(iout,*) "WARNING WRONG SIZE OF LIPIDIC PHASE"
+ buflipbot=bordlipbot+lipbufthick
+ bufliptop=bordliptop-lipbufthick
+ if ((lipbufthick*2.0d0).gt.lipthick)
+ &write(iout,*) "WARNING WRONG SIZE OF LIP AQ BUF"
+ endif
+ write(iout,*) "bordliptop=",bordliptop
+ write(iout,*) "bordlipbot=",bordlipbot
+ write(iout,*) "bufliptop=",bufliptop
+ write(iout,*) "buflipbot=",buflipbot
call readi(controlcard,'SYM',symetr,1)
write (iout,*) "DISTCHAINMAX",distchainmax
write (iout,*) "delta",delta
write (iout,*) "einicheck",einicheck
write (iout,*) "rescale_mode",rescale_mode
call flush(iout)
+ if (TUBElog.gt.0) then
+ call reada(controlcard,"XTUBE",tubecenter(1),0.0d0)
+ call reada(controlcard,"YTUBE",tubecenter(2),0.0d0)
+ call reada(controlcard,"ZTUBE",tubecenter(3),0.0d0)
+ call reada(controlcard,"RTUBE",tubeR0,0.0d0)
+ call reada(controlcard,"TUBETOP",bordtubetop,boxzsize)
+ call reada(controlcard,"TUBEBOT",bordtubebot,0.0d0)
+ call reada(controlcard,"TUBEBUF",tubebufthick,1.0d0)
+ buftubebot=bordtubebot+tubebufthick
+ buftubetop=bordtubetop-tubebufthick
+ endif
bxfile=index(controlcard,"BXFILE").gt.0
cxfile=index(controlcard,"CXFILE").gt.0
if (nslice .eq. 1 .and. .not.bxfile .and. .not.cxfile)
zscfile=index(controlcard,"ZSCFILE").gt.0
with_dihed_constr = index(controlcard,"WITH_DIHED_CONSTR").gt.0
write (iout,*) "with_dihed_constr ",with_dihed_constr
+ with_theta_constr = index(controlcard,"WITH_THETA_CONSTR").gt.0
+ write (iout,*) "with_theta_constr ",with_theta_constr
+ call readi(controlcard,'SHIELD',shield_mode,0)
+C if(me.eq.king .or. .not. out1file .and. fg_rank.eq.0) then
+ write(iout,*) "shield_mode",shield_mode
+C endif
+ call readi(controlcard,'TORMODE',tor_mode,0)
+C if(me.eq.king .or. .not. out1file .and. fg_rank.eq.0) then
+ write(iout,*) "torsional and valence angle mode",tor_mode
+ if (shield_mode.gt.0) then
+ pi=3.141592d0
+C VSolvSphere the volume of solving sphere
+C print *,pi,"pi"
+C rpp(1,1) is the energy r0 for peptide group contact and will be used for it
+C there will be no distinction between proline peptide group and normal peptide
+C group in case of shielding parameters
+ VSolvSphere=4.0/3.0*pi*rpp(1,1)**3
+ VSolvSphere_div=VSolvSphere-4.0/3.0*pi*(rpp(1,1)/2.0)**3
+ write (iout,*) VSolvSphere,VSolvSphere_div
+C long axis of side chain
+C do i=1,ntyp
+C long_r_sidechain(i)=vbldsc0(1,i)
+C short_r_sidechain(i)=sigma0(i)
+C enddo
+ buff_shield=1.0d0
+ endif
+
call readi(controlcard,'CONSTR_DIST',constr_dist,0)
+ dyn_ss=index(controlcard,"DYN_SS").gt.0
return
end
c------------------------------------------------------------------------------
external ilen,iroof
double precision rmsdev,energia(0:max_ene),efree,eini,temp
double precision prop(maxQ)
- integer ntot_all(maxslice,0:maxprocs-1)
+ integer ntot_all(maxslice,0:maxprocs-1), maxslice_buff
integer iparm,ib,iib,ir,nprop,nthr,npars
double precision etot,time
integer ixdrf,iret
#ifdef MPI
c Check if everyone has the same number of conformations
- call MPI_Allgather(stot(1),maxslice,MPI_INTEGER,
+
+c call MPI_ALLgather(MPI_IN_PLACE,stot(1),MPI_DATATYPE_NULL,
+c & ntot_all(1,0),maxslice,MPI_INTEGER,MPI_Comm_World,IERROR)
+
+ maxslice_buff=maxslice
+
+ call MPI_Allgather(stot(1),maxslice_buff,MPI_INTEGER,
& ntot_all(1,0),maxslice,MPI_INTEGER,MPI_Comm_World,IERROR)
lerr=.false.
do i=0,nprocs-1
iroof = ii
return
end
+C--------------------------------------------------------------------------
+ subroutine gen_dist_constr
+C Generate CA distance constraints.
+ implicit real*8 (a-h,o-z)
+ include "DIMENSIONS"
+ include "DIMENSIONS.ZSCOPT"
+ include "DIMENSIONS.FREE"
+ include "COMMON.TORSION"
+ include "COMMON.INTERACT"
+ include "COMMON.IOUNITS"
+ include "COMMON.TIME1"
+ include "COMMON.PROT"
+ include "COMMON.PROTFILES"
+ include "COMMON.CHAIN"
+ include "COMMON.NAMES"
+ include "COMMON.FFIELD"
+ include "COMMON.ENEPS"
+ include "COMMON.WEIGHTS"
+ include "COMMON.FREE"
+ include "COMMON.CONTROL"
+ include "COMMON.ENERGIES"
+ include "COMMON.SPLITELE"
+ include "COMMON.SBRIDGE"
+ include "COMMON.SHIELD"
+ dimension itype_pdb(maxres)
+ common /pizda/ itype_pdb
+ character*2 iden
+cd print *,'gen_dist_constr: nnt=',nnt,' nct=',nct
+cd write (2,*) 'gen_dist_constr: nnt=',nnt,' nct=',nct,
+cd & ' nstart_sup',nstart_sup,' nstart_seq',nstart_seq,
+cd & ' nsup',nsup
+ if (constr_dist.eq.11) then
+ do i=nstart_sup,nstart_sup+nsup-1
+ do j=i+2,nstart_sup+nsup-1
+ distance=dist(i,j)
+ if (distance.le.15.0) then
+ nhpb=nhpb+1
+ ihpb(nhpb)=i+nstart_seq-nstart_sup
+ jhpb(nhpb)=j+nstart_seq-nstart_sup
+ forcon(nhpb)=sqrt(0.04*distance)
+ fordepth(nhpb)=sqrt(40.0/distance)
+ dhpb(nhpb)=distance-0.1d0
+ dhpb1(nhpb)=distance+0.1d0
+
+C#ifdef MPI
+C if (.not.out1file .or. me.eq.king)
+C & write (iout,'(a,3i5,f8.2,f10.2)') "+dist.constr ",
+C & nhpb,ihpb(nhpb),jhpb(nhpb),dhpb(nhpb),forcon(nhpb)
+C#else
+ write (iout,'(a,3i5,f8.2,f10.2)') "+dist.constr ",
+ & nhpb,ihpb(nhpb),jhpb(nhpb),dhpb(nhpb),forcon(nhpb)
+C#endif
+ endif
+ enddo
+ enddo
+ else
+ do i=nstart_sup,nstart_sup+nsup-1
+cd write (2,*) 'i',i,' seq ',restyp(itype(i+nstart_seq-nstart_sup)),
+cd & ' seq_pdb', restyp(itype_pdb(i))
+ do j=i+2,nstart_sup+nsup-1
+ nhpb=nhpb+1
+ ihpb(nhpb)=i+nstart_seq-nstart_sup
+ jhpb(nhpb)=j+nstart_seq-nstart_sup
+ forcon(nhpb)=weidis
+ dhpb(nhpb)=dist(i,j)
+ enddo
+ enddo
+ endif
+cd write (iout,'(a)') 'Distance constraints:'
+cd do i=nss+1,nhpb
+cd ii=ihpb(i)
+cd jj=jhpb(i)
+cd iden='CA'
+cd if (ii.gt.nres) then
+cd iden='SC'
+cd ii=ii-nres
+cd jj=jj-nres
+cd endif
+cd write (iout,'(a,1x,a,i4,3x,a,1x,a,i4,2f10.3)')
+cd & restyp(itype(ii)),iden,ii,restyp(itype(jj)),iden,jj,
+cd & dhpb(i),forcon(i)
+cd enddo
+ return
+ end
projects / unres.git / blobdiff