read2sigma in wham and cluster_wham

[unres.git] / source / wham / src / energy_p_new.F

diff --git a/source/wham/src/energy_p_new.F b/source/wham/src/energy_p_new.F
index a954783..13267da 100644 (file)
--- a/source/wham/src/energy_p_new.F
+++ b/source/wham/src/energy_p_new.F
@@ -3182,7 +3182,7 @@ c
       include 'COMMON.SETUP'
       include 'COMMON.NAMES'
 
-      do i=1,19
+      do i=1,max_template
         distancek(i)=9999999.9
       enddo
 
@@ -3201,6 +3201,7 @@ c     write(iout,*) "waga_theta",waga_theta,"waga_d",waga_d
          dij=dist(i,j)
 c        write (iout,*) "dij(",i,j,") =",dij
          do k=1,constr_homology
+           if(.not.l_homo(k,ii)) cycle
            distance(k)=odl(k,ii)-dij
 c          write (iout,*) "distance(",k,") =",distance(k)
 c
@@ -3220,7 +3221,17 @@ c
            endif
          enddo
          
-         min_odl=minval(distancek)
+c         min_odl=minval(distancek)
+         do kk=1,constr_homology
+          if(l_homo(kk,ii)) then 
+            min_odl=distancek(kk)
+            exit
+          endif
+         enddo
+         do kk=1,constr_homology
+          if(l_homo(kk,ii) .and. distancek(kk).lt.min_odl) 
+     &              min_odl=distancek(kk)
+         enddo
 c        write (iout,* )"min_odl",min_odl
 #ifdef DEBUG
          write (iout,*) "ij dij",i,j,dij
@@ -3233,6 +3244,7 @@ c        write (iout,* )"min_odl",min_odl
 c Nie wiem po co to liczycie jeszcze raz!
 c            odleg3=-waga_dist(iset)*((distance(i,j,k)**2)/ 
 c     &              (2*(sigma_odl(i,j,k))**2))
+           if(.not.l_homo(k,ii)) cycle
            if (waga_dist.ge.0.0d0) then
 c
 c          For Gaussian-type Urestr
@@ -3283,6 +3295,7 @@ c            godl=dexp(((-(distance(i,j,k)**2)/(2*(sigma_odl(i,j,k))**2))
 c     &           *waga_dist)+min_odl
 c          sgodl=-godl(k)*distance(k)*sigma_odl(k,ii)*waga_dist
 c
+         if(.not.l_homo(k,ii)) cycle
          if (waga_dist.ge.0.0d0) then
 c          For Gaussian-type Urestr
 c
@@ -4103,7 +4116,7 @@ c      write (iout,*) "ithetyp",(ithetyp(i),i=1,ntyp1)
           coskt(k)=dcos(k*theti2)
           sinkt(k)=dsin(k*theti2)
         enddo
-        if (i.gt.3  .and. itype(i-3).ne.ntyp1) then
+        if (i.gt.3 .and. itype(max0(i-3,1)).ne.ntyp1) then
 #ifdef OSF
           phii=phi(i)
           if (phii.ne.phii) phii=150.0
@@ -5228,6 +5241,7 @@ c      write (iout,*) "EBACK_SC_COR",itau_start,itau_end,nterm_sccor
       esccor=0.0D0
       do i=itau_start,itau_end
         esccor_ii=0.0D0
+        if ((itype(i-2).eq.ntyp1).or.(itype(i-1).eq.ntyp1)) cycle
         isccori=isccortyp(itype(i-2))
         isccori1=isccortyp(itype(i-1))
         phii=phi(i)
@@ -5261,11 +5275,9 @@ c   3 = SC...Ca...Ca...SCi
           cosphi=dcos(j*tauangle(intertyp,i))
           sinphi=dsin(j*tauangle(intertyp,i))
           esccor=esccor+v1ij*cosphi+v2ij*sinphi
-#define DEBUG
 #ifdef DEBUG
           esccor_ii=esccor_ii+v1ij*cosphi+v2ij*sinphi
 #endif
-#undef DEBUG
           gloci=gloci+j*(v2ij*cosphi-v1ij*sinphi)
         enddo
         gloc_sc(intertyp,i-3,icg)=gloc_sc(intertyp,i-3,icg)+wsccor*gloci
@@ -5605,7 +5617,7 @@ C The system gains extra energy.
 #ifdef DEBUG
               write (iout,*) "ecorr",i,j,i+1,j1,
      &               ehbcorr(i,j,i+1,j1,jj,kk,0.72D0,0.32D0)
-#undef DEBUG
+#endif
               n_corr=n_corr+1
             else if (j1.eq.j) then
 C Contacts I-J and I-(J+1) occur simultaneously.