integer iscode,indpdb,outpdb,outmol2,icomparfunc,pdbint,
- & ensembles
+ & ensembles,constr_dist,constr_homology,homol_nset,
+ & iset,ihset
+ real*8 waga_homology
+ real*8 waga_dist, waga_angle, waga_theta, waga_d, dist_cut,
+ & dist2_cut
logical refstr,pdbref,punch_dist,print_rms,caonly,verbose,
& merge_helices,bxfile,cxfile,histfile,entfile,zscfile,
- & rmsrgymap,with_dihed_constr,check_conf,histout
+ & rmsrgymap,with_dihed_constr,check_conf,histout,out1file,
+ & read2sigma,l_homo
common /cntrl/ iscode,indpdb,refstr,pdbref,outpdb,outmol2,
& punch_dist,print_rms,caonly,verbose,icomparfunc,pdbint,
& merge_helices,bxfile,cxfile,histfile,entfile,zscfile,rmsrgymap,
- & ensembles,with_dihed_constr,check_conf,histout
+ & ensembles,with_dihed_constr,check_conf,histout,constr_dist,
+ & constr_homology,out1file,homol_nset,read2sigma
+ common /homol/ waga_homology(maxR),
+ & waga_dist,waga_angle,waga_theta,waga_d,dist_cut,dist2_cut,
+ & iset,ihset,l_homo(max_template,maxdim)