Merge branch 'prerelease-3.2.1' into czarek

[unres.git] / source / unres / src_MD / energy_p_new_barrier.F

diff --git a/source/unres/src_MD/energy_p_new_barrier.F b/source/unres/src_MD/energy_p_new_barrier.F
index 98c5191..8d588af 100644 (file)
--- a/source/unres/src_MD/energy_p_new_barrier.F
+++ b/source/unres/src_MD/energy_p_new_barrier.F
@@ -134,7 +134,7 @@ C
 cmc
 cmc Sep-06: egb takes care of dynamic ss bonds too
 cmc
-      if (dyn_ss) call dyn_set_nss
+c      if (dyn_ss) call dyn_set_nss
 
 c      print *,"Processor",myrank," computed USCSC"
 #ifdef TIMING
@@ -331,6 +331,7 @@ C
       energia(23)=evdw_m
 c      print *," Processor",myrank," calls SUM_ENERGY"
       call sum_energy(energia,.true.)
+      if (dyn_ss) call dyn_set_nss
 c      print *," Processor",myrank," left SUM_ENERGY"
 #ifdef TIMING
 #ifdef MPI
@@ -1589,7 +1590,8 @@ C
             IF (dyn_ss_mask(i).and.dyn_ss_mask(j)) THEN
               call dyn_ssbond_ene(i,j,evdwij)
               evdw=evdw+evdwij
-              write(iout,*) 'dyn_ssbond_ene ',evdwij
+              if (energy_dec) write (iout,'(a6,2i5,0pf7.3,a3)') 
+     &                        'evdw',i,j,evdwij,' ss'
             ELSE
             ind=ind+1
             itypj=itype(j)
@@ -4278,10 +4280,15 @@ c        write (iout,*) "i",i," ii",ii," iii",iii," jj",jj," jjj",jjj,
 c     &    dhpb(i),dhpb1(i),forcon(i)
 C 24/11/03 AL: SS bridges handled separately because of introducing a specific
 C    distance and angle dependent SS bond potential.
-        if (ii.gt.nres .and. itype(iii).eq.1 .and. itype(jjj).eq.1) then
+cmc        if (ii.gt.nres .and. itype(iii).eq.1 .and. itype(jjj).eq.1) then
+C 18/07/06 MC: Use the convention that the first nss pairs are SS bonds
+        if (.not.dyn_ss .and. i.le.nss) then
+C 15/02/13 CC dynamic SSbond - additional check
+         if (ii.gt.nres 
+     &       .and. itype(iii).eq.1 .and. itype(jjj).eq.1) then 
           call ssbond_ene(iii,jjj,eij)
           ehpb=ehpb+2*eij
-c          write (iout,*) "eij",eij
+         endif
         else if (ii.gt.nres .and. jj.gt.nres) then
 c Restraints from contact prediction
           dd=dist(ii,jj)
@@ -8200,7 +8207,7 @@ c----------------------------------------------------------------------------
       include 'COMMON.GEO'
       logical swap
       double precision vv(2),pizda(2,2),auxmat(2,2),auxvec(2),
-     & auxvec1(2),auxvec2(1),auxmat1(2,2)
+     & auxvec1(2),auxvec2(2),auxmat1(2,2)
       logical lprn
       common /kutas/ lprn
 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC