1 ********************************************************************************
2 * Settings for the program of united-residue peptide simulation in real space *
4 * ------- As of 6/23/01 ----------- *
6 ********************************************************************************
7 C Max. number of processors.
10 C Max. number of fine-grain processors
12 parameter (max_fg_procs=maxprocs)
13 C Max. number of coarse-grain processors
15 parameter (max_cg_procs=maxprocs)
16 C Max. number of AA residues
18 parameter (maxres=1500)
19 C Appr. max. number of interaction sites
20 integer maxres2,maxres6,mmaxres6
21 parameter (maxres2=2*maxres,maxres6=6*maxres)
22 parameter (mmaxres6=(maxres6*(maxres6+1)/2))
23 C Max. number of variables
25 parameter (maxvar=6*maxres)
26 C Max. number of groups of interactions that a given SC is involved in
28 parameter (maxint_gr=2)
29 C Max. number of derivatives of virtual-bond and side-chain vectors in theta
32 parameter (maxdim=(maxres-1)*(maxres-2)/2)
33 C Max. number of SC contacts
35 parameter (maxcont=12*maxres)
36 C Max. number of contacts per residue
38 parameter (maxconts=maxres)
39 C Number of AA types (at present only natural AA's will be handled
41 parameter (ntyp=24,ntyp1=ntyp+1)
42 C Max. number of types of dihedral angles & multiplicity of torsional barriers
43 C and the number of terms in double torsionals
44 integer maxtor,maxterm,maxlor,maxtermd_1,maxtermd_2
45 parameter (maxtor=4,maxterm=10,maxlor=3,maxtermd_1=8,maxtermd_2=8)
46 C Max. number of residue types and parameters in expressions for
47 C virtual-bond angle bending potentials
48 integer maxthetyp,maxthetyp1,maxtheterm,maxtheterm2,maxtheterm3,
49 & maxsingle,maxdouble,mmaxtheterm
50 parameter (maxthetyp=3,maxthetyp1=maxthetyp+1,maxtheterm=20,
51 & maxtheterm2=6,maxtheterm3=4,maxsingle=6,maxdouble=4,
52 & mmaxtheterm=maxtheterm)
53 c Max number of torsional terms in SCCOR
55 parameter (maxterm_sccor=3)
56 C Max. number of lobes in SC distribution
59 C Max. number of S-S bridges
62 C Max. number of dihedral angle constraints
64 parameter (maxdih_constr=maxres)
65 C Max. number of patterns in the pattern database
68 C Max. number of residues in a peptide in the database
70 parameter (maxres_base=10)
71 C Max. number of threading attempts
73 parameter (maxthread=20)
74 C Max. number of move types in MCM
76 parameter (maxmovetype=4)
77 C Max. number of stored confs. in MC/MCM simulation
79 parameter (maxsave=20)
80 C Max. number of energy intervals
82 parameter (max_ene=10)
83 C Max. number of conformations in Master's cache array
85 parameter (max_cache=10)
86 C Max. number of conformations in the pool
88 parameter (max_pool=10)
89 C Number of energy components
91 parameter (n_ene=21,n_ene2=2*n_ene)
92 C Number of threads in deformation
93 integer max_thread,max_thread2
94 parameter (max_thread=4,max_thread2=2*max_thread)
95 C Number of structures to compare at t=0
96 integer max_threadss,max_threadss2
97 parameter (max_threadss=8,max_threadss2=2*max_threadss)
98 C Maxmimum number of angles per residue
101 C Maximum number of groups of angles
103 parameter (mxgr=2*maxres)
104 C Maximum number of chains
107 C Maximum number of generated conformations
110 C Maximum number of n7 generated conformations
113 C Maximum number of moves (n1-n8)
116 C Maximum number of seed
118 parameter (max_seed=1)
119 C Maximum number of timesteps for which stochastic MD matrices can be stored
120 integer maxflag_stoch
121 parameter (maxflag_stoch=0)
122 C Maximum number of backbone fragments in restraining
124 parameter (maxfrag_back=4)
125 C Maximum number of SC local term fitting function coefficiants
127 parameter (maxsccoef=65)
128 C Maximum number of terms in SC bond-stretching potential
130 parameter (maxbondterm=3)
131 C Maximum number of conformation stored in cache on each CPU before sending
132 C to master; depends on nstex / ntwx ratio
133 integer max_cache_traj
134 parameter (max_cache_traj=10)