1 --------------------------------------------------------------------------------
3 --------------------------------------------------------------------------------
5 Output file : ala10.out_GB
7 Sidechain potential file :
8 ../../PARAM/sc_GB_opt.1gab_3S_qclass5no310-shan2-sc-16-10-8k
9 SCp potential file : ../../PARAM/scp.parm
10 Electrostatic potential file : ../../PARAM/electr_631Gdp.parm
11 Cumulant coefficient file : ../../PARAM/fourier_opt.parm.1igd_hc_iter3_3
12 Torsional parameter file : ../../PARAM/torsion_631Gdp.parm
13 Double torsional parameter file : ../../PARAM/torsion_double_631Gdp.parm
14 Bond & inertia constant file :
15 \0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0
16 Bending parameter file : ../../PARAM/thetaml.5parm
17 Rotamer parameter file : ../../PARAM/scgauss.parm
18 Threading database : ../../PARAM/patterns.cart
19 --------------------------------------------------------------------------------
20 ********************************************************************************
21 United-residue force field calculation - serial job.
22 ********************************************************************************
23 --------------------------------------------------------------------------------
25 --------------------------------------------------------------------------------
26 Input file : ala10.inp
27 Output file : ala10.out_GB
29 Sidechain potential file :
30 ../../PARAM/sc_GB_opt.1gab_3S_qclass5no310-shan2-sc-16-10-8k
31 SCp potential file : ../../PARAM/scp.parm
32 Electrostatic potential file : ../../PARAM/electr_631Gdp.parm
33 Cumulant coefficient file : ../../PARAM/fourier_opt.parm.1igd_hc_iter3_3
34 Torsional parameter file : ../../PARAM/torsion_631Gdp.parm
35 Double torsional parameter file : ../../PARAM/torsion_double_631Gdp.parm
36 Bond & inertia constant file : ../../PARAM/bond.parm
37 Bending parameter file : ../../PARAM/thetaml.5parm
38 Rotamer parameter file : ../../PARAM/scgauss.parm
39 Threading database : ../../PARAM/patterns.cart
40 --------------------------------------------------------------------------------
41 ********************************************************************************
42 United-residue force field calculation - serial job.
43 ********************************************************************************
45 Potential is GB , exponents are 6 12
47 Disulfide bridge parameters:
48 S-S bridge energy: -5.50
49 d0cm: 3.78 akcm: 15.10
50 akth: 11.00 akct: 12.00
51 v1ss: -1.08 v2ss: 7.61 v3ss: 13.70
52 Random seed: -1111333. -1111333
59 Time limit (min): 60.0
61 Library routine used to diagonalize matrices.
63 =========================== Parameters of the MD run ===========================
66 positions: angstrom, time: 48.9 fs
67 velocity: angstrom/(48.9 fs), acceleration: angstrom/(48.9 fs)**2
68 energy: kcal/mol, temperature: K
70 Number of time steps: 500000
71 Initial time step of numerical integration: 0.10000 natural units
73 Maximum acceleration threshold to scale down the time step: 1.00000
74 Maximum predicted energy drift to reduce the timestep: 10.00000
75 Maximum velocity threshold to reduce velocities: 20.00000
76 Frequency of property output: 100
77 Frequency of coordinate output: 1000
78 Berendsen bath calculation
79 Temperature: 300.00000
80 Coupling constant (tau): 0.10000
81 Momenta will be reset at zero every 1000 steps
82 Velocities will be reset at random every 1000 steps
84 ============================== End of MD run setup =============================
87 Energy-term weights (unscaled):
89 WSCC= 1.352790 (SC-SC)
91 WELEC= 0.715340 (p-p electr)
92 WVDWPP= 0.113710 (p-p VDW)
93 WBOND= 1.000000 (stretching)
94 WANG= 1.138730 (bending)
95 WSCLOC= 0.162580 (SC local)
96 WTOR= 1.985990 (torsional)
97 WTORD= 1.570690 (double torsional)
98 WSTRAIN= 1.000000 (SS bridges & dist. cnstr.)
99 WEL_LOC= 0.160360 (multi-body 3-rd order)
100 WCORR4= 0.428870 (multi-body 4th order)
101 WCORR5= 0.000000 (multi-body 5th order)
102 WCORR6= 0.000000 (multi-body 6th order)
103 WTURN3= 1.687220 (turns, 3rd order)
104 WTURN4= 0.662300 (turns, 4th order)
105 WTURN6= 0.000000 (turns, 6th order)
107 Hydrogen-bonding correlation between contact pairs of peptide groups
109 Scaling factor of 1,4 SC-p interactions: 0.400
110 General scaling factor of SC-p interactions: 1.000
112 Energy-term weights (scaled):
114 WSCC= 1.352790 (SC-SC)
115 WSCP= 1.593040 (SC-p)
116 WELEC= 0.715340 (p-p electr)
117 WVDWPP= 0.113710 (p-p VDW)
118 WBOND= 1.000000 (stretching)
119 WANG= 1.138730 (bending)
120 WSCLOC= 0.162580 (SC local)
121 WTOR= 1.985990 (torsional)
122 WTORD= 1.570690 (double torsional)
123 WSTRAIN= 1.000000 (SS bridges & dist. cnstr.)
124 WEL_LOC= 0.160360 (multi-body 3-rd order)
125 WCORR4= 0.428870 (multi-body 4th order)
126 WCORR5= 0.000000 (multi-body 5th order)
127 WCORR6= 0.000000 (multi-body 6th order)
128 WTURN3= 1.687220 (turns, 3rd order)
129 WTURN4= 0.662300 (turns, 4th order)
130 WTURN6= 0.000000 (turns, 6th order)
131 Reference temperature for weights calculation: 300.
132 Parameters of the SS-bond potential:
133 D0CM 3.78 AKCM 15.1 AKTH 11. AKCT 12.
134 V1SS -1.08 V2SS 7.61 V3SS 13.7
149 Boundaries in phi angle sampling:
162 NZ_START= 2 NZ_END= 11
164 Initial geometry will be read in.
166 Geometry of the virtual chain.
167 Res d Theta Phi Dsc Alpha Omega
168 D 1 0.000 0.000 0.000 0.000 0.000 0.000
169 ALA 2 3.800 0.000 0.000 0.743 110.000 -120.000
170 ALA 3 3.800 90.000 0.000 0.743 110.000 -120.000
171 ALA 4 3.800 90.000 180.000 0.743 110.000 -120.000
172 ALA 5 3.800 90.000 180.000 0.743 100.000 -120.000
173 ALA 6 3.800 90.000 180.000 0.743 110.000 -120.000
174 ALA 7 3.800 90.000 180.000 0.743 100.000 -120.000
175 ALA 8 3.800 90.000 180.000 0.743 110.000 -120.000
176 ALA 9 3.800 90.000 180.000 0.743 110.000 -120.000
177 ALA 10 3.800 90.000 180.000 0.743 110.000 -120.000
178 ALA 11 3.800 90.000 180.000 0.743 110.000 -120.000
179 D 12 3.800 90.000 180.000 0.000 0.000 0.000
182 ********************************************************************************
185 Calling hpb_partition
188 ====================MD calculation start====================
189 Initial velocities randomly generated
190 Initial backbone velocities
191 0.0985613045 0.182541246 -0.175012272
192 0.0102624552 -0.00832639177 -0.0338376351
193 -0.056966253 0.0105924889 0.0892183362
194 0.198814605 -0.206530296 -0.129893846
195 -0.211791315 0.00481756089 -0.0561117396
196 0.320740287 0.0271571246 -0.0168567367
197 -0.258631653 0.0452753705 0.0203327665
198 -0.104588634 0.0890304814 0.21719133
199 0.12571601 0.0388163758 -0.0858192955
200 Initial side-chain velocities
201 0.129045332 0.102991309 0.0692178513
202 0.206720741 -0.110641343 -0.257731189
203 -0.160163999 -0.173543508 0.0225891613
204 0.165090118 -0.215707777 0.214578372
205 -0.129264261 0.0218807005 0.0271886133
206 -0.0187644697 0.197948263 0.0893595715
207 -0.404397288 0.0318758556 0.316640216
208 0.0467818054 -0.256257134 0.242201964
209 0.120855148 -0.170471387 -0.0974419001
210 0.0520794364 -0.204123131 -0.0290270921
211 Calling the zero-angular momentum subroutine
212 vcm right after adjustment:
213 1.32744057E-17 1.49805206E-17 2.001564E-17
216 alpha-carbon coordinates centroid coordinates
218 D ( 1) 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
219 ALA( 2) 3.80000 0.00000 0.00000 3.73284 0.42654 0.60465
220 ALA( 3) 3.80000 -3.80000 0.00000 3.37346 -3.73284 -0.60465
221 ALA( 4) 7.60000 -3.80000 0.00000 7.53284 -3.37346 0.60465
222 ALA( 5) 7.60000 -7.60000 0.00000 7.25007 -7.43253 -0.63368
223 ALA( 6) 11.40000 -7.60000 0.00000 11.33284 -7.17346 0.60465
224 ALA( 7) 11.40000 -11.40000 0.00000 11.05007 -11.23253 -0.63368
225 ALA( 8) 15.20000 -11.40000 0.00000 15.13284 -10.97346 0.60465
226 ALA( 9) 15.20000 -15.20000 0.00000 14.77346 -15.13284 -0.60465
227 ALA( 10) 19.00000 -15.20000 0.00000 18.93284 -14.77346 0.60465
228 ALA( 11) 19.00000 -19.00000 0.00000 18.57346 -18.93284 -0.60465
229 D ( 12) 22.80000 -19.00000 0.00000 22.80000 -19.00000 0.00000
231 Geometry of the virtual chain.
232 Res d Theta Phi Dsc Alpha Omega
233 D 1 0.000 0.000 0.000 0.000 0.000 0.000
234 ALA 2 3.800 0.000 0.000 0.743 110.000 -120.000
235 ALA 3 3.800 90.000 0.000 0.743 110.000 -120.000
236 ALA 4 3.800 90.000 180.000 0.743 110.000 -120.000
237 ALA 5 3.800 90.000 180.000 0.743 100.000 -120.000
238 ALA 6 3.800 90.000 180.000 0.743 110.000 -120.000
239 ALA 7 3.800 90.000 180.000 0.743 100.000 -120.000
240 ALA 8 3.800 90.000 180.000 0.743 110.000 -120.000
241 ALA 9 3.800 90.000 180.000 0.743 110.000 -120.000
242 ALA 10 3.800 90.000 180.000 0.743 110.000 -120.000
243 ALA 11 3.800 90.000 180.000 0.743 110.000 -120.000
244 D 12 3.800 90.000 180.000 0.000 0.000 180.000
245 Potential energy and its components
246 7.47559461 -14.6654656 10.4550224 -3.73102752 -2.22563065 0. 0.
247 16.4479298 -1.4902445 6.10625584 0. -2.10603756 94.2477472 0. -0.9403905
248 0. -11.7126126 1.51917354E-27 0. 0. 0. 0.
249 Initial: Kinetic energy 14.4315028 potential energy 7.47559461 total energy
250 21.9070974 maximum acceleration 0.12481625
251 Velocities reset to random values, time 91.01
252 Momenta zeroed out, time 91.01
253 Velocities reset to random values, time 172.07
254 Momenta zeroed out, time 172.07
255 Velocities reset to random values, time 268.81
256 Momenta zeroed out, time 268.81
257 Velocities reset to random values, time 356.32
258 Momenta zeroed out, time 356.32
259 Velocities reset to random values, time 436.97
260 Momenta zeroed out, time 436.97
261 Velocities reset to random values, time 527.77
262 Momenta zeroed out, time 527.77
263 Velocities reset to random values, time 621.44
264 Momenta zeroed out, time 621.44
265 Velocities reset to random values, time 719.74
266 Momenta zeroed out, time 719.74
267 Velocities reset to random values, time 818.16
268 Momenta zeroed out, time 818.16
269 Velocities reset to random values, time 906.41
270 Momenta zeroed out, time 906.41
271 Velocities reset to random values, time 1006.41
272 Momenta zeroed out, time 1006.41
273 Velocities reset to random values, time 1099.10
274 Momenta zeroed out, time 1099.10
275 Velocities reset to random values, time 1195.94
276 Momenta zeroed out, time 1195.94
277 Velocities reset to random values, time 1282.94
278 Momenta zeroed out, time 1282.94
279 Velocities reset to random values, time 1378.01
280 Momenta zeroed out, time 1378.01
281 Velocities reset to random values, time 1475.56
282 Momenta zeroed out, time 1475.56
283 Velocities reset to random values, time 1574.48
284 Momenta zeroed out, time 1574.48
285 Velocities reset to random values, time 1666.29
286 Momenta zeroed out, time 1666.29
287 Velocities reset to random values, time 1758.94
288 Momenta zeroed out, time 1758.94
289 Velocities reset to random values, time 1854.75
290 Momenta zeroed out, time 1854.75
291 Velocities reset to random values, time 1946.68
292 Momenta zeroed out, time 1946.68
293 Velocities reset to random values, time 2032.61
294 Momenta zeroed out, time 2032.61
295 Velocities reset to random values, time 2126.65
296 Momenta zeroed out, time 2126.65
297 Velocities reset to random values, time 2226.56
298 Momenta zeroed out, time 2226.56
299 Velocities reset to random values, time 2321.20
300 Momenta zeroed out, time 2321.20
301 Velocities reset to random values, time 2401.81
302 Momenta zeroed out, time 2401.81
303 Velocities reset to random values, time 2486.01
304 Momenta zeroed out, time 2486.01
305 Velocities reset to random values, time 2579.70
306 Momenta zeroed out, time 2579.70
307 Velocities reset to random values, time 2673.55
308 Momenta zeroed out, time 2673.55
309 Velocities reset to random values, time 2770.00
310 Momenta zeroed out, time 2770.00
311 Velocities reset to random values, time 2867.89
312 Momenta zeroed out, time 2867.89
313 Velocities reset to random values, time 2954.37
314 Momenta zeroed out, time 2954.37
315 Velocities reset to random values, time 3045.76
316 Momenta zeroed out, time 3045.76
317 Velocities reset to random values, time 3131.09
318 Momenta zeroed out, time 3131.09
319 Velocities reset to random values, time 3223.84
320 Momenta zeroed out, time 3223.84
321 Velocities reset to random values, time 3316.70
322 Momenta zeroed out, time 3316.70
323 Velocities reset to random values, time 3403.00
324 Momenta zeroed out, time 3403.00
325 Velocities reset to random values, time 3490.24
326 Momenta zeroed out, time 3490.24
327 Velocities reset to random values, time 3587.80
328 Momenta zeroed out, time 3587.80
329 Velocities reset to random values, time 3679.73
330 Momenta zeroed out, time 3679.73
331 Velocities reset to random values, time 3779.50
332 Momenta zeroed out, time 3779.50
333 Velocities reset to random values, time 3876.53
334 Momenta zeroed out, time 3876.53
335 Velocities reset to random values, time 3969.94
336 Momenta zeroed out, time 3969.94
337 Velocities reset to random values, time 4064.27
338 Momenta zeroed out, time 4064.27
339 Velocities reset to random values, time 4160.16
340 Momenta zeroed out, time 4160.16
341 Velocities reset to random values, time 4245.89
342 Momenta zeroed out, time 4245.89
343 Velocities reset to random values, time 4338.01
344 Momenta zeroed out, time 4338.01
345 Velocities reset to random values, time 4435.87
346 Momenta zeroed out, time 4435.87
347 Velocities reset to random values, time 4523.40
348 Momenta zeroed out, time 4523.40
349 Velocities reset to random values, time 4617.56
350 Momenta zeroed out, time 4617.56
351 Velocities reset to random values, time 4705.97
352 Momenta zeroed out, time 4705.97
353 Velocities reset to random values, time 4799.78
354 Momenta zeroed out, time 4799.78
355 Velocities reset to random values, time 4894.11
356 Momenta zeroed out, time 4894.11
357 Velocities reset to random values, time 4991.46
358 Momenta zeroed out, time 4991.46
359 Velocities reset to random values, time 5083.44
360 Momenta zeroed out, time 5083.44
361 Velocities reset to random values, time 5183.30
362 Momenta zeroed out, time 5183.30
363 Velocities reset to random values, time 5274.53
364 Momenta zeroed out, time 5274.53
365 Velocities reset to random values, time 5371.48
366 Momenta zeroed out, time 5371.48
367 Velocities reset to random values, time 5460.94
368 Momenta zeroed out, time 5460.94
369 Velocities reset to random values, time 5557.76
370 Momenta zeroed out, time 5557.76
371 Velocities reset to random values, time 5652.43
372 Momenta zeroed out, time 5652.43
373 Velocities reset to random values, time 5743.23
374 Momenta zeroed out, time 5743.23
375 Velocities reset to random values, time 5827.26
376 Momenta zeroed out, time 5827.26
377 Velocities reset to random values, time 5919.08
378 Momenta zeroed out, time 5919.08
379 Velocities reset to random values, time 6011.08
380 Momenta zeroed out, time 6011.08
381 Velocities reset to random values, time 6105.96
382 Momenta zeroed out, time 6105.96
383 Velocities reset to random values, time 6194.97
384 Momenta zeroed out, time 6194.97
385 Velocities reset to random values, time 6292.31
386 Momenta zeroed out, time 6292.31
387 Velocities reset to random values, time 6380.50
388 Momenta zeroed out, time 6380.50
389 Velocities reset to random values, time 6475.69
390 Momenta zeroed out, time 6475.69
391 Velocities reset to random values, time 6564.86
392 Momenta zeroed out, time 6564.86
393 Velocities reset to random values, time 6661.63
394 Momenta zeroed out, time 6661.63
395 Velocities reset to random values, time 6756.85
396 Momenta zeroed out, time 6756.85
397 Velocities reset to random values, time 6854.38
398 Momenta zeroed out, time 6854.38
399 Velocities reset to random values, time 6938.96
400 Momenta zeroed out, time 6938.96
401 Velocities reset to random values, time 7029.06
402 Momenta zeroed out, time 7029.06
403 Velocities reset to random values, time 7121.81
404 Momenta zeroed out, time 7121.81
405 Velocities reset to random values, time 7215.82
406 Momenta zeroed out, time 7215.82
407 Velocities reset to random values, time 7313.34
408 Momenta zeroed out, time 7313.34
409 Velocities reset to random values, time 7404.38
410 Momenta zeroed out, time 7404.38
411 Velocities reset to random values, time 7501.23
412 Momenta zeroed out, time 7501.23
413 Velocities reset to random values, time 7595.33
414 Momenta zeroed out, time 7595.33
415 Velocities reset to random values, time 7687.73
416 Momenta zeroed out, time 7687.73
417 Velocities reset to random values, time 7783.29
418 Momenta zeroed out, time 7783.29
419 Velocities reset to random values, time 7879.22
420 Momenta zeroed out, time 7879.22
421 Velocities reset to random values, time 7971.22
422 Momenta zeroed out, time 7971.22
423 Velocities reset to random values, time 8066.52
424 Momenta zeroed out, time 8066.52
425 Velocities reset to random values, time 8161.77
426 Momenta zeroed out, time 8161.77
427 Velocities reset to random values, time 8260.41
428 Momenta zeroed out, time 8260.41
429 Velocities reset to random values, time 8356.99
430 Momenta zeroed out, time 8356.99
431 Velocities reset to random values, time 8441.49
432 Momenta zeroed out, time 8441.49
433 Velocities reset to random values, time 8530.98
434 Momenta zeroed out, time 8530.98
435 Velocities reset to random values, time 8630.93
436 Momenta zeroed out, time 8630.93
437 Velocities reset to random values, time 8725.64
438 Momenta zeroed out, time 8725.64
439 Velocities reset to random values, time 8823.89
440 Momenta zeroed out, time 8823.89
441 Velocities reset to random values, time 8914.48
442 Momenta zeroed out, time 8914.48
443 Velocities reset to random values, time 9004.57
444 Momenta zeroed out, time 9004.57
445 Velocities reset to random values, time 9098.17
446 Momenta zeroed out, time 9098.17
447 Velocities reset to random values, time 9195.92
448 Momenta zeroed out, time 9195.92
449 Velocities reset to random values, time 9294.17
450 Momenta zeroed out, time 9294.17
451 Velocities reset to random values, time 9379.10
452 Momenta zeroed out, time 9379.10
453 Velocities reset to random values, time 9476.00
454 Momenta zeroed out, time 9476.00
455 Velocities reset to random values, time 9569.80
456 Momenta zeroed out, time 9569.80
457 Velocities reset to random values, time 9652.62
458 Momenta zeroed out, time 9652.62
459 Velocities reset to random values, time 9743.89
460 Momenta zeroed out, time 9743.89
461 Velocities reset to random values, time 9840.99
462 Momenta zeroed out, time 9840.99
463 Velocities reset to random values, time 9931.33
464 Momenta zeroed out, time 9931.33
465 Velocities reset to random values, time 10021.79
466 Momenta zeroed out, time 10021.79
467 Velocities reset to random values, time 10116.54
468 Momenta zeroed out, time 10116.54
469 Velocities reset to random values, time 10212.01
470 Momenta zeroed out, time 10212.01
471 Velocities reset to random values, time 10312.01
472 Momenta zeroed out, time 10312.01
473 Velocities reset to random values, time 10406.14
474 Momenta zeroed out, time 10406.14
475 Velocities reset to random values, time 10497.50
476 Momenta zeroed out, time 10497.50
477 Velocities reset to random values, time 10579.61
478 Momenta zeroed out, time 10579.61
479 Velocities reset to random values, time 10665.55
480 Momenta zeroed out, time 10665.55
481 Velocities reset to random values, time 10762.14
482 Momenta zeroed out, time 10762.14
483 Velocities reset to random values, time 10855.14
484 Momenta zeroed out, time 10855.14
485 Velocities reset to random values, time 10946.20
486 Momenta zeroed out, time 10946.20
487 Velocities reset to random values, time 11034.07
488 Momenta zeroed out, time 11034.07
489 Velocities reset to random values, time 11125.34
490 Momenta zeroed out, time 11125.34
491 Velocities reset to random values, time 11211.41
492 Momenta zeroed out, time 11211.41
493 Velocities reset to random values, time 11306.94
494 Momenta zeroed out, time 11306.94
495 Velocities reset to random values, time 11406.00
496 Momenta zeroed out, time 11406.00
497 Velocities reset to random values, time 11503.10
498 Momenta zeroed out, time 11503.10
499 Velocities reset to random values, time 11582.70
500 Momenta zeroed out, time 11582.70
501 Velocities reset to random values, time 11676.77
502 Momenta zeroed out, time 11676.77
503 Velocities reset to random values, time 11768.81
504 Momenta zeroed out, time 11768.81
505 Velocities reset to random values, time 11858.95
506 Momenta zeroed out, time 11858.95
507 Velocities reset to random values, time 11949.22
508 Momenta zeroed out, time 11949.22
509 Velocities reset to random values, time 12045.40
510 Momenta zeroed out, time 12045.40
511 Velocities reset to random values, time 12139.42
512 Momenta zeroed out, time 12139.42
513 Velocities reset to random values, time 12233.91
514 Momenta zeroed out, time 12233.91
515 Velocities reset to random values, time 12324.02
516 Momenta zeroed out, time 12324.02
517 Velocities reset to random values, time 12413.54
518 Momenta zeroed out, time 12413.54
519 Velocities reset to random values, time 12506.35
520 Momenta zeroed out, time 12506.35
521 Velocities reset to random values, time 12597.83
522 Momenta zeroed out, time 12597.83
523 Velocities reset to random values, time 12684.69
524 Momenta zeroed out, time 12684.69
525 Velocities reset to random values, time 12774.06
526 Momenta zeroed out, time 12774.06
527 Velocities reset to random values, time 12869.41
528 Momenta zeroed out, time 12869.41
529 Velocities reset to random values, time 12956.72
530 Momenta zeroed out, time 12956.72
531 Velocities reset to random values, time 13048.83
532 Momenta zeroed out, time 13048.83
533 Velocities reset to random values, time 13143.52
534 Momenta zeroed out, time 13143.52
535 Velocities reset to random values, time 13238.00
536 Momenta zeroed out, time 13238.00
537 Velocities reset to random values, time 13330.75
538 Momenta zeroed out, time 13330.75
539 Velocities reset to random values, time 13423.67
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627 Velocities reset to random values, time 17438.10
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658 Momenta zeroed out, time 18770.45
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662 Momenta zeroed out, time 18951.64
663 Velocities reset to random values, time 19044.76
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672 Momenta zeroed out, time 19406.92
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730 Momenta zeroed out, time 22020.23
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925 Velocities reset to random values, time 30940.59
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937 Velocities reset to random values, time 31459.23
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1067 Velocities reset to random values, time 37429.87
1068 Momenta zeroed out, time 37429.87
1069 Velocities reset to random values, time 37512.15
1070 Momenta zeroed out, time 37512.15
1071 Velocities reset to random values, time 37602.79
1072 Momenta zeroed out, time 37602.79
1073 Velocities reset to random values, time 37695.39
1074 Momenta zeroed out, time 37695.39
1075 Velocities reset to random values, time 37785.59
1076 Momenta zeroed out, time 37785.59
1077 Velocities reset to random values, time 37876.06
1078 Momenta zeroed out, time 37876.06
1079 Velocities reset to random values, time 37964.00
1080 Momenta zeroed out, time 37964.00
1081 Velocities reset to random values, time 38047.71
1082 Momenta zeroed out, time 38047.71
1083 Velocities reset to random values, time 38138.68
1084 Momenta zeroed out, time 38138.68
1085 Velocities reset to random values, time 38227.60
1086 Momenta zeroed out, time 38227.60
1087 Velocities reset to random values, time 38322.53
1088 Momenta zeroed out, time 38322.53
1089 Velocities reset to random values, time 38415.28
1090 Momenta zeroed out, time 38415.28
1091 Velocities reset to random values, time 38510.14
1092 Momenta zeroed out, time 38510.14
1093 Velocities reset to random values, time 38601.29
1094 Momenta zeroed out, time 38601.29
1095 Velocities reset to random values, time 38688.45
1096 Momenta zeroed out, time 38688.45
1097 Velocities reset to random values, time 38779.20
1098 Momenta zeroed out, time 38779.20
1099 Velocities reset to random values, time 38871.92
1100 Momenta zeroed out, time 38871.92
1101 Velocities reset to random values, time 38969.67
1102 Momenta zeroed out, time 38969.67
1103 Velocities reset to random values, time 39063.49
1104 Momenta zeroed out, time 39063.49
1105 Velocities reset to random values, time 39156.58
1106 Momenta zeroed out, time 39156.58
1107 Velocities reset to random values, time 39243.50
1108 Momenta zeroed out, time 39243.50
1109 Velocities reset to random values, time 39337.77
1110 Momenta zeroed out, time 39337.77
1111 Velocities reset to random values, time 39412.59
1112 Momenta zeroed out, time 39412.59
1113 Velocities reset to random values, time 39496.38
1114 Momenta zeroed out, time 39496.38
1115 Velocities reset to random values, time 39589.06
1116 Momenta zeroed out, time 39589.06
1117 Velocities reset to random values, time 39685.45
1118 Momenta zeroed out, time 39685.45
1119 Velocities reset to random values, time 39777.17
1120 Momenta zeroed out, time 39777.17
1121 Velocities reset to random values, time 39864.94
1122 Momenta zeroed out, time 39864.94
1123 Velocities reset to random values, time 39953.41
1124 Momenta zeroed out, time 39953.41
1125 Velocities reset to random values, time 40038.89
1126 Momenta zeroed out, time 40038.89
1127 Velocities reset to random values, time 40130.38
1128 Momenta zeroed out, time 40130.38
1129 Velocities reset to random values, time 40227.79
1130 Momenta zeroed out, time 40227.79
1131 Velocities reset to random values, time 40315.65
1132 Momenta zeroed out, time 40315.65
1133 Velocities reset to random values, time 40407.63
1134 Momenta zeroed out, time 40407.63
1135 Velocities reset to random values, time 40495.38
1136 Momenta zeroed out, time 40495.38
1137 Velocities reset to random values, time 40587.76
1138 Momenta zeroed out, time 40587.76
1139 Velocities reset to random values, time 40671.09
1140 Momenta zeroed out, time 40671.09
1141 Velocities reset to random values, time 40762.01
1142 Momenta zeroed out, time 40762.01
1143 Velocities reset to random values, time 40853.51
1144 Momenta zeroed out, time 40853.51
1145 Velocities reset to random values, time 40938.35
1146 Momenta zeroed out, time 40938.35
1147 Velocities reset to random values, time 41038.00
1148 Momenta zeroed out, time 41038.00
1149 Velocities reset to random values, time 41134.52
1150 Momenta zeroed out, time 41134.52
1151 Velocities reset to random values, time 41229.42
1152 Momenta zeroed out, time 41229.42
1153 Velocities reset to random values, time 41324.29
1154 Momenta zeroed out, time 41324.29
1155 Velocities reset to random values, time 41422.16
1156 Momenta zeroed out, time 41422.16
1157 Velocities reset to random values, time 41508.79
1158 Momenta zeroed out, time 41508.79
1159 Velocities reset to random values, time 41592.34
1160 Momenta zeroed out, time 41592.34
1161 Velocities reset to random values, time 41681.66
1162 Momenta zeroed out, time 41681.66
1163 Velocities reset to random values, time 41768.04
1164 Momenta zeroed out, time 41768.04
1165 Velocities reset to random values, time 41864.55
1166 Momenta zeroed out, time 41864.55
1167 Velocities reset to random values, time 41949.83
1168 Momenta zeroed out, time 41949.83
1169 Velocities reset to random values, time 42043.04
1170 Momenta zeroed out, time 42043.04
1171 Velocities reset to random values, time 42134.67
1172 Momenta zeroed out, time 42134.67
1173 Velocities reset to random values, time 42224.37
1174 Momenta zeroed out, time 42224.37
1175 Velocities reset to random values, time 42315.60
1176 Momenta zeroed out, time 42315.60
1177 Velocities reset to random values, time 42394.38
1178 Momenta zeroed out, time 42394.38
1179 Velocities reset to random values, time 42488.18
1180 Momenta zeroed out, time 42488.18
1181 Velocities reset to random values, time 42575.43
1182 Momenta zeroed out, time 42575.43
1183 Velocities reset to random values, time 42663.02
1184 Momenta zeroed out, time 42663.02
1185 Velocities reset to random values, time 42751.41
1186 Momenta zeroed out, time 42751.41
1187 Velocities reset to random values, time 42839.26
1188 Momenta zeroed out, time 42839.26
1189 Velocities reset to random values, time 42934.96
1190 Momenta zeroed out, time 42934.96
1191 Velocities reset to random values, time 43026.39
1192 Momenta zeroed out, time 43026.39
1193 Velocities reset to random values, time 43124.86
1194 Momenta zeroed out, time 43124.86
1195 Velocities reset to random values, time 43218.29
1196 Momenta zeroed out, time 43218.29
1197 Velocities reset to random values, time 43304.14
1198 Momenta zeroed out, time 43304.14
1199 Velocities reset to random values, time 43398.90
1200 Momenta zeroed out, time 43398.90
1201 Velocities reset to random values, time 43488.60
1202 Momenta zeroed out, time 43488.60
1203 Velocities reset to random values, time 43585.05
1204 Momenta zeroed out, time 43585.05
1205 Velocities reset to random values, time 43679.60
1206 Momenta zeroed out, time 43679.60
1207 Velocities reset to random values, time 43768.32
1208 Momenta zeroed out, time 43768.32
1209 Velocities reset to random values, time 43864.29
1210 Momenta zeroed out, time 43864.29
1211 Velocities reset to random values, time 43956.93
1212 Momenta zeroed out, time 43956.93
1213 Velocities reset to random values, time 44051.39
1214 Momenta zeroed out, time 44051.39
1215 Velocities reset to random values, time 44145.01
1216 Momenta zeroed out, time 44145.01
1217 Velocities reset to random values, time 44236.37
1218 Momenta zeroed out, time 44236.37
1219 Velocities reset to random values, time 44326.59
1220 Momenta zeroed out, time 44326.59
1221 Velocities reset to random values, time 44408.42
1222 Momenta zeroed out, time 44408.42
1223 Velocities reset to random values, time 44506.98
1224 Momenta zeroed out, time 44506.98
1225 Velocities reset to random values, time 44598.82
1226 Momenta zeroed out, time 44598.82
1227 Velocities reset to random values, time 44691.16
1228 Momenta zeroed out, time 44691.16
1229 Velocities reset to random values, time 44783.56
1230 Momenta zeroed out, time 44783.56
1231 Velocities reset to random values, time 44876.80
1232 Momenta zeroed out, time 44876.80
1233 Velocities reset to random values, time 44976.80
1234 Momenta zeroed out, time 44976.80
1235 Velocities reset to random values, time 45068.03
1236 Momenta zeroed out, time 45068.03
1237 Velocities reset to random values, time 45155.41
1238 Momenta zeroed out, time 45155.41
1239 Velocities reset to random values, time 45242.73
1240 Momenta zeroed out, time 45242.73
1241 Velocities reset to random values, time 45333.47
1242 Momenta zeroed out, time 45333.47
1243 Velocities reset to random values, time 45425.35
1244 Momenta zeroed out, time 45425.35
1245 Velocities reset to random values, time 45517.56
1246 Momenta zeroed out, time 45517.56
1247 Velocities reset to random values, time 45615.00
1248 Momenta zeroed out, time 45615.00
1249 Velocities reset to random values, time 45710.01
1250 Momenta zeroed out, time 45710.01
1253 =================================== Timing ===================================
1255 MD calculations setup: 3.00000E-02
1256 Energy & gradient evaluation: 3.62660E+02
1257 Stochastic MD setup: 0.00000E+00
1258 Stochastic MD step setup: 0.00000E+00
1259 MD steps: 3.93140E+02
1262 ============================ End of MD calculation ===========================
1265 ***** Computation time: 0 hours 6 minutes 33 seconds *****