1 <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 3.2//EN"><html><head><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><title>Jpred secondary structure prediction results</title></head><body bgcolor="#ffffff"><pre><code>jp_fSt_H_1 : NLYIQWLKDGGPSSGRPPPS : jp_fSt_H_1
3 : 1---------11-------- :
4 OrigSeq : NLYIQWLKDGGPSSGRPPPS : OrigSeq
6 Jnet : --<font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font>------------ : Jnet
7 jhmm : --<font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font><font color=e90055>H</font>------------ : jhmm
9 Lupas 14 : -------------------- : Lupas 14
10 Lupas 21 : -------------------- : Lupas 21
11 Lupas 28 : -------------------- : Lupas 28
13 Jnet_25 : -<font color=aa0000>B</font><font color=aa0000>B</font><font color=aa0000>B</font>-<font color=aa0000>B</font><font color=aa0000>B</font>---<font color=aa0000>B</font>--------- : Jnet_25
14 Jnet_5 : ---<font color=aa0000>B</font>--<font color=aa0000>B</font>------------- : Jnet_5
15 Jnet_0 : -------------------- : Jnet_0
16 Jnet Rel : <font color=00aa00>9</font>211555336<font color=00aa00>7</font><font color=00aa00>7</font><font color=00aa00>7</font><font color=00aa00>7</font><font color=00aa00>7</font><font color=00aa00>8</font><font color=00aa00>8</font><font color=00aa00>8</font><font color=00aa00>9</font><font color=00aa00>9</font> : Jnet Rel
17 </code></pre><hr><pre><code><b>
20 Colour code for alignment:
21 Blue - Complete identity at a position
22 Shades of red - The more red a position is, the higher the level of
23 conservation of chemical properties of the amino acids
24 Jnet - Final secondary structure prediction for query
25 jalign - Jnet alignment prediction
26 jhmm - Jnet hmm profile prediction
27 jpssm - Jnet PSIBLAST pssm profile prediction
29 Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
31 Note on coiled coil predictions - = less than 50% probability
32 c = between 50% and 90% probability
33 C = greater than 90% probability
35 Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
36 Jnet_5 - Jnet prediction of burial, less than 5% exposure
37 Jnet_0 - Jnet prediction of burial, 0% exposure
38 Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.
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