[  8%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/energy_p_new.F.o
[  9%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/output.f.o
[  9%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/scales.f.o
[  9%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/add.f.o
[  9%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/arcos.f.o
[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/banach.f.o
/.../source/source/cluster/wham/src-HCD-5D/energy_p_new.F:2365.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)

[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/bank.F.o
/.../source/source/wham/src-HCD-5D/energy_p_new.F:2384.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)

[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/blas.f.o
[ 11%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/initialize_p.F.o
[ 12%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/bond_move.f.o
[ 12%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cartprint.f.o
[ 13%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/chainbuild.F.o
[ 13%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/check_bond.f.o
[ 13%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/molread_zs.F.o
[ 13%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/checkder_p.F.o
[ 14%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/check_sc_distr.f.o
[ 15%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/openunits.F.o

[ 20%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/cartprint.f.o
[ 20%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/eigen.f.o
[ 21%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/fitsq.f.o
[ 21%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/elecont.f.o
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[ 22%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_split-sep.F.o
/.../source/source/cluster/wham/src-HCD-5D/geomout.F:189.40:

  180 format (I5,2F12.3,I2,$,8(1X,2I3,$))                               
                                        1

Warning: $ should be the last specifier in format at (1)

/.../source/source/cluster/wham/src-HCD-5D/geomout.F:190.29:

  190 format (3X,11(1X,2I3,$))                                          
                             1

Warning: $ should be the last specifier in format at (1)

[ 22%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/entmcm.F.o
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[ 23%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/gnmr1.f.o
[ 24%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/hc.f.o
[ 24%] [ 24%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/icant.f.o
[ 24%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/initialize_p.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gauss.f.o
[ 24%] [ 24%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gen_rand_conf.F.o
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[ 25%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/geomout.F.o

[ 32%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/fitsq.f.o
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[ 32%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/matmult.f.o
[ 32%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/misc.f.o
[ 33%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/geomout.F.o
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/.../source/source/cluster/unres/src/geomout.F:166.37:

  180 format (I5,F12.3,I2,8(1X,2I3,$))                                  
                                     1

Warning: $ should be the last specifier in format at (1)

/.../source/source/cluster/unres/src/geomout.F:167.29:

  190 format (3X,11(1X,2I3,$))                                          
                             1

Warning: $ should be the last specifier in format at (1)

[ 35%] [ 35%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/noyes.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gnmr1.f.o
[ 35%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/misc.f.o
[ 35%] [ 36%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/parmread.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/indexx.f.o
[ 36%] [ 36%] [ 36%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/initialize_p.F.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/hc.f.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/mygetenv.F.o
[ 37%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/parmread.F.o
/.../source/source/unres/src-HCD-5D/initialize_p.F:463.28:

      common /przechowalnia/ iturn3_start_all(0:max_fg_procs),          
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (6676504 vs 6150168 bytes)

[ 37%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/initialize.f.o
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[ 38%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/main_clust.F.o
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[ 39%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/noyes.f.o
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[ 40%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/readpdb.f.o
[ 41%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/readrtns.F.o
[ 42%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/permut.F.o

[ 46%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/rescode.f.o
[ 47%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/setup_var.f.o
[ 48%] [ 49%] [ 50%] [ 50%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/intcor.f.o
Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readpdb-mult.F.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/cxread.F.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/slices.F.o
/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:452.35:

            call sccenter(ires,iii,sccor)                               
                                   1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:474.43:

                call sccenter(ires_old,iii,sccor)                       
                                           1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:606.31:

        call sccenter(ires,iii,sccor)                                   
                               1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

[ 50%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/int_to_cart.f.o
[ 51%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/store_parm.F.o
Linking Fortran executable ../../../../bin/cluster_unres_gfortran.exe
[ 51%] Built target UNRES_CLUSTER_BIN
[ 51%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/timing.F.o
Scanning dependencies of target UNRES_XDRF2PDBM_BIN-M
[ 51%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDBM_BIN-M.dir/xdrf2pdb-m.F.o
[ 51%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_lesyng.F.o
[ 51%] [ 52%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDBM_BIN-M.dir/geomout.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/lagrangian_lesyng.F.o

[ 56%] Scanning dependencies of target UNRES_XDRF2PDB_BIN-M
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/mc.F.o
[ 56%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/xdrf2pdb.F.o
[ 57%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/geomout.F.o
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[ 59%] [ 59%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/PMFprocess.F.o
Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/srtclust.f.o
[ 59%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/misc.f.o
[ 59%] [ 59%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/oligomer.F.o
Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/ssMD.F.o

/.../source/source/wham/src-HCD-5D/oligomer.F:37:0: warning: extra tokens at end of #endif directive [enabled by default]

 #endif DEBUG
 ^

/.../source/source/wham/src-HCD-5D/oligomer.F:87:0: warning: extra tokens at end of #endif directive [enabled by default]

 #endif;
 ^
[ 60%] [ 61%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/readrtns_compar.F.o
Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/rescode.f.o
[ 61%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/nazwy.f.o
[ 61%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/seq2chains.f.o
[ 61%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/readpdb-mult.F.o
Linking Fortran executable ../../../bin/xdrf2pdb
/.../source/source/wham/src-HCD-5D/readpdb-mult.F:454.35:

            call sccenter(ires,iii,sccor)                               
                                   1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/wham/src-HCD-5D/readpdb-mult.F:476.43:

                call sccenter(ires_old,iii,sccor)                       
                                           1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/wham/src-HCD-5D/readpdb-mult.F:608.31:

        call sccenter(ires,iii,sccor)                                   
                               1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

[ 61%] [ 61%] Built target UNRES_XDRF2PDB_BIN-M
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o
[ 62%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o
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/.../source/source/unres/src-HCD-5D/MD_A-MTS.F:1656.23:

      common /lbfgstat/ status,niter,nfun                               
                       1

Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons

[ 64%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/wrtclust.f.o
[ 64%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/fitsq.f.o
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[ 65%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/contact.f.o
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[ 65%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/contfunc.f.o
[ 65%] [ 66%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_ref_str.F.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/cont_frag.f.o
[ 66%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/conf_compar.F.o

/.../source/source/wham/src-HCD-5D/conf_compar.F:378.24:

            write(istat,'(1x,$,20(i3,$))')                              
                        1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:381.25:

              write(istat,'(1x,$,20(f5.1,f5.2$))')                      
                         1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:384.25:

              write(istat,'(1x,$,20(f5.1$))')                           
                         1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:387.24:

            write(istat,'(1x,$,20(i1,$))')                              
                        1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:393.27:

              write (istat,'(100(i1,$))')(iclass(k,j),                  
                           1

Warning: $ should be the last specifier in format at (1)

[ 66%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minim_mcmf.F.o
[ 67%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/seq2chains.f.o
[ 67%] [ 68%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/chain_symmetry.F.o
Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/iperm.f.o
[ 69%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/match_contact.f.o
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Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MP.F.o
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[ 73%] [ 73%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/qwolynes.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/muca_md.F.o
/.../source/source/unres/src-HCD-5D/MREMD.F:1400.29:

       common /przechowalnia/ d_restart1,d_restart2                     
                             1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (294912000 vs 147505152 bytes)

/.../source/source/unres/src-HCD-5D/MREMD.F:1809.28:

      common /przechowalnia/ d_restart1                                 
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)

/.../source/source/unres/src-HCD-5D/MREMD.F:2004.28:

      common /przechowalnia/ d_restart1                                 
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)

[ 73%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/refsys.f.o
[ 73%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_constr_homology.F.o
[ 74%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/read_ref_str.F.o
[ 74%] [ 74%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/rmscalc.F.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/secondary.f.o
[ 75%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/newconf.f.o
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[ 76%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/cinfo.f.o
[ 77%] Building C object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
Linking Fortran executable ../../../../bin/cluster_wham-mult_gfortran_MPI_E0LL2Y_HCD-5D.exe

[ 88%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/surfatom.f.o
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[ 89%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/together.F.o
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      common /lbfgstat/ status,niter,nfun                               
                       1

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      common /lbfgstat/ status,niter,nfun                               
                       1

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      common /lbfgstat/ status,niter,ncalls                             
                       1

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/.../source/source/unres/src-HCD-5D/energy_p_new-sep_barrier.F:1625.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj              
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (32 vs 40 bytes)

/.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:9167.28:

      common /przechowalnia/ zapas                                      
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (430080000 vs 159744000 bytes)

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      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)

Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_E0LL2Y_HCD-5D.exe