Wednesday, May 15 2024 17:06:00
UNRES
4.81s| Exit Value | 1 |
|---|
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CTEST_FULL_OUTPUT
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WARNING: Linux kernel CMA support was requested via the
btl_vader_single_copy_mechanism MCA variable, but CMA support is
not available due to restrictive ptrace settings.
The vader shared memory BTL will fall back on another single-copy
mechanism if one is available. This may result in lower performance.
Local host: dell15
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[dell15:121503] *** Process received signal ***
[dell15:121503] Signal: Segmentation fault (11)
[dell15:121503] Signal code: Address not mapped (1)
[dell15:121503] Failing at address: 0x192c76d0c
[dell15:121503] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10330)[0x2b64ce40e330]
[dell15:121503] [ 1] /tmp/cdash/homology/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x41d6b3]
[dell15:121503] [ 2] /tmp/cdash/homology/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x50ed7d]
[dell15:121503] [ 3] /tmp/cdash/homology/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x50e4ae]
[dell15:121503] [ 4] /tmp/cdash/homology/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x404133]
[dell15:121503] [ 5] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x2b64cf2b9f45]
[dell15:121503] [ 6] /tmp/cdash/homology/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x404039]
[dell15:121503] *** End of error message ***
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Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
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mpirun noticed that process rank 0 with PID 0 on node dell15 exited on signal 11 (Segmentation fault).
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[dell15:121498] 1 more process has sent help message help-btl-vader.txt / cma-permission-denied
[dell15:121498] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
MPI: node= 0 iseed= -3059742
indpdb= 23 pdbref= T
ns= 0
Call Read_Bridge.
ns= 0
dc 65.91700000000000
dc 65.91700000000000 122.6835000000000
48.08350000000000
after etotal
(standard_in) 1: syntax error
(standard_in) 1: syntax error
./prota_unres_energy_check_mult.sh: line 311: [: -eq: unary operator expected
(standard_in) 1: syntax error
./prota_unres_energy_check_mult.sh: line 318: [: -eq: unary operator expected
WARNING: energy is somewhat different , ene=
