Wednesday, May 08 2024 10:35:15
UNRES
7.15s| Exit Value | 2 |
|---|
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CTEST_FULL_OUTPUT
[dell15:138524] [[48557,0],0] ORTE_ERROR_LOG: Data unpack would read past end of buffer in file ../../orte/util/show_help.c at line 507
[dell15:138524] [[48557,0],0] ORTE_ERROR_LOG: Data unpack would read past end of buffer in file ../../orte/util/show_help.c at line 507
[dell15:138529] *** Process received signal ***
[dell15:138529] Signal: Segmentation fault (11)
[dell15:138529] Signal code: Address not mapped (1)
[dell15:138529] Failing at address: 0xffffffffca38aaf0
[dell15:138529] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10330)[0x2af196c1f330]
[dell15:138529] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x155c20)[0x2af197bfec20]
[dell15:138529] [ 2] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(+0x6ce4c)[0x2af1959b2e4c]
[dell15:138529] [ 3] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(pgf90io_fmt_writea+0xbe)[0x2af1959b01ce]
[dell15:138529] [ 4] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x4112a2]
[dell15:138529] [ 5] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x4b9cda]
[dell15:138529] [ 6] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x4b918a]
[dell15:138529] [ 7] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x403d73]
[dell15:138529] [ 8] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x2af197acaf45]
[dell15:138529] [ 9] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x403c79]
[dell15:138529] *** End of error message ***
[dell15:138530] *** Process received signal ***
[dell15:138530] Signal: Segmentation fault (11)
[dell15:138530] Signal code: Address not mapped (1)
[dell15:138530] Failing at address: 0xfffffffef637fea5
[dell15:138530] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10330)[0x2ace7ee0e330]
[dell15:138530] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x155c20)[0x2ace7fdedc20]
[dell15:138530] [ 2] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(+0x6ce4c)[0x2ace7dba1e4c]
[dell15:138530] [ 3] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(pgf90io_fmt_writea+0xbe)[0x2ace7db9f1ce]
[dell15:138530] [ 4] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x4111e2]
[dell15:138530] [ 5] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x4b9cda]
[dell15:138530] [ 6] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x4b918a]
[dell15:138530] [ 7] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x403d73]
[dell15:138530] [ 8] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x2ace7fcb9f45]
[dell15:138530] [ 9] /tmp/cdash/build/bin/unresMD_pgf90_MPI_E0LL2Y.exe[0x403c79]
[dell15:138530] *** End of error message ***
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 1 with PID 0 on node dell15 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
Processor 0 out of 2 rank in CG_COMM 0
size of CG_COMM 2 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Inside initialize thetname_pdb
Processor 1 out of 2 rank in CG_COMM 1
size of CG_COMM 2 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Inside initialize thetname_pdb
/tmp/cdash/source/PARAM/thetaml.5parm
51 opened
/tmp/cdash/source/PARAM/thetaml.5parm
51 opened
MPI: node= 1 iseed= -2222665
indpdb= 25 pdbref= T
MPI: node= 0 iseed= -1111332
Call Read_Bridge.
ns= 4
Processor 1 0 0 ivec_start 1
ivec_end 39
indpdb= 25 pdbref= T
Call Read_Bridge.
ns= 4
Processor 0 0 0 ivec_start 1
ivec_end 39
after etotal
Calling MINIM_DC
check_ecart before sumsl
after etotal
Calling MINIM_DC
check_ecart before sumsl
check_ecart
check_ecart
SUMSL return code is 8 eval 239
# eval/s 105.4946105254703
refstr= T
SUMSL return code is 8 eval 239
# eval/s 100.7588899428700
refstr= T
initial energy=134.838 reference=134.8382
SUMSL return code
ERROR = SUMSL return code is not 4
but not failing this test, it is known problem with dissulfides
CRITICAL: energy is loo large 15.326200, ene= -135.995600
