8.15s
Test: UNRES_M_multi_ene1
(Passed)
Build: devel Linux-pgi-MPI-DFA E0LL2Y
(dell15)
on 2020-03-19 15:58:01
Repository revision: 65a74fce67c215adace99cc576a5bbdbefb64321
Show Command Line/bin/sh "/tmp/cdash/devel/build/source/unres/src_MD-M-SAXS-homology/test_mpi_E0LL2Y.sh" "1DKZcut-ene" "1" "1"
Show Test Time Graph
Show Failing/Passing Graph
Test outputCTEST_FULL_OUTPUT
1
indpdb= 23 pdbref= T
Call Read_Bridge.
ns= 0
Processor 0 CG Group 0 absolute rank 0
iatsc_s= 2 iatsc_e= 92
Processor 0 CG group 0 absolute rank 0
nele_int_tot 3828 my_ele_inds= 1 my_ele_inde
3828
Processor
CG group
absolute rank
Processor: 0 CG group 0 absolute rank 0
loc_start 2 loc_end 92 ithet_start 3
ithet_end 93 iphi_start 5 iphi_end 93
iphid_start 5 iphid_end 92 ibond_start 2
ibond_end 92 ibondp_start 3 ibondp_end 93
iturn3_start 2 iturn3_end 90 iturn4_start 2
iturn4_end 89 ivec_start 1 ivec_end 92
iset_start 4 iset_end 94 idihconstr_start 1
idihconstr_end 0 ithetaconstr_start 1
ithetaconstr_end 0
Processor: 0 0 igrad_start 1 igrad_end
91 ngrad_start 1 ngrad_end 4186
Processor: 0 0 1 2 93
Processor: 0 0 2 3 93
Processor: 0 0 3 4 93
Processor: 0 0 4 5 93
Processor: 0 0 5 6 93
Processor: 0 0 6 7 93
Processor: 0 0 7 8 93
Processor: 0 0 8 9 93
Processor: 0 0 9 10 93
Processor: 0 0 10 11 93
Processor: 0 0 11 12 93
Processor: 0 0 12 13 93
Processor: 0 0 13 14 93
Processor: 0 0 14 15 93
Processor: 0 0 15 16 93
Processor: 0 0 16 17 93
Processor: 0 0 17 18 93
Processor: 0 0 18 19 93
Processor: 0 0 19 20 93
Processor: 0 0 20 21 93
Processor: 0 0 21 22 93
Processor: 0 0 22 23 93
Processor: 0 0 23 24 93
Processor: 0 0 24 25 93
Processor: 0 0 25 26 93
Processor: 0 0 26 27 93
Processor: 0 0 27 28 93
Processor: 0 0 28 29 93
Processor: 0 0 29 30 93
Processor: 0 0 30 31 93
Processor: 0 0 31 32 93
Processor: 0 0 32 33 93
Processor: 0 0 33 34 93
Processor: 0 0 34 35 93
Processor: 0 0 35 36 93
Processor: 0 0 36 37 93
Processor: 0 0 37 38 93
Processor: 0 0 38 39 93
Processor: 0 0 39 40 93
Processor: 0 0 40 41 93
Processor: 0 0 41 42 93
Processor: 0 0 42 43 93
Processor: 0 0 43 44 93
Processor: 0 0 44 45 93
Processor: 0 0 45 46 93
Processor: 0 0 46 47 93
Processor: 0 0 47 48 93
Processor: 0 0 48 49 93
Processor: 0 0 49 50 93
Processor: 0 0 50 51 93
Processor: 0 0 51 52 93
Processor: 0 0 52 53 93
Processor: 0 0 53 54 93
Processor: 0 0 54 55 93
Processor: 0 0 55 56 93
Processor: 0 0 56 57 93
Processor: 0 0 57 58 93
Processor: 0 0 58 59 93
Processor: 0 0 59 60 93
Processor: 0 0 60 61 93
Processor: 0 0 61 62 93
Processor: 0 0 62 63 93
Processor: 0 0 63 64 93
Processor: 0 0 64 65 93
Processor: 0 0 65 66 93
Processor: 0 0 66 67 93
Processor: 0 0 67 68 93
Processor: 0 0 68 69 93
Processor: 0 0 69 70 93
Processor: 0 0 70 71 93
Processor: 0 0 71 72 93
Processor: 0 0 72 73 93
Processor: 0 0 73 74 93
Processor: 0 0 74 75 93
Processor: 0 0 75 76 93
Processor: 0 0 76 77 93
Processor: 0 0 77 78 93
Processor: 0 0 78 79 93
Processor: 0 0 79 80 93
Processor: 0 0 80 81 93
Processor: 0 0 81 82 93
Processor: 0 0 82 83 93
Processor: 0 0 83 84 93
Processor: 0 0 84 85 93
Processor: 0 0 85 86 93
Processor: 0 0 86 87 93
Processor: 0 0 87 88 93
Processor: 0 0 88 89 93
Processor: 0 0 89 90 93
[dell15:170745] *** Process received signal ***
[dell15:170745] Signal: Segmentation fault (11)
[dell15:170745] Signal code: Address not mapped (1)
[dell15:170745] Failing at address: 0x151c21fd8
[dell15:170745] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10330)[0x2ba1ed36f330]
[dell15:170745] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x155c20)[0x2ba1ee34ec20]
[dell15:170745] [ 2] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(+0x6ce4c)[0x2ba1ec102e4c]
[dell15:170745] [ 3] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(pgf90io_fmt_writea+0xbe)[0x2ba1ec1001ce]
[dell15:170745] [ 4] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x41d94b]
[dell15:170745] [ 5] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x513f15]
[dell15:170745] [ 6] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x51379f]
[dell15:170745] [ 7] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x404073]
[dell15:170745] [ 8] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x2ba1ee21af45]
[dell15:170745] [ 9] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x403f79]
[dell15:170745] *** End of error message ***
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 0 on node dell15 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
Processor: 0 0 90 91 93
Processor: 0 0 91 92 92
after etotal
OK: absdiff= 0, ene= 443.288700