Monday, June 03 2024 02:32:58
UNRES
8.56s| Exit Value | 1 |
|---|
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CTEST_FULL_OUTPUT
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WARNING: Linux kernel CMA support was requested via the
btl_vader_single_copy_mechanism MCA variable, but CMA support is
not available due to restrictive ptrace settings.
The vader shared memory BTL will fall back on another single-copy
mechanism if one is available. This may result in lower performance.
Local host: dell15
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2
2
JESTEM
JESTEM
JESTEM
JESTEM
JESTEM
JESTEM
indpdb= 23 pdbref= T
Call Read_Bridge.
ns= 0
ns= 0
Processor 1 CG Group 0 absolute rank 1
iatsc_s= 28 iatsc_e= 92
Processor 1 CG group 0 absolute rank 1
nele_int_tot 3828 my_ele_inds= 1915 my_ele_inde
3828
Processor
[NON-XML-CHAR-0x1]
CG group
absolute rank
[NON-XML-CHAR-0x1]
Processor: 1 CG group 0 absolute rank 1
loc_start 47 loc_end 92 ithet_start 48
ithet_end 93 iphi_start 49 iphi_end 93
iphid_start 49 iphid_end 92 ibond_start 47
ibond_end 92 ibondp_start 48 ibondp_end 93
iturn3_start 46 iturn3_end 90 iturn4_start 46
iturn4_end 89 ivec_start 47 ivec_end 92
iset_start 49 iset_end 94 idihconstr_start 1
idihconstr_end 0 ithetaconstr_start 1
ithetaconstr_end 0
Processor: 1 1 igrad_start 27 igrad_end
91 ngrad_start 2094 ngrad_end 4186
Processor: 1 1 27 80 93
Processor: 1 1 28 29 93
Processor: 1 1 29 30 93
Processor: 1 1 30 31 93
Processor: 1 1 31 32 93
Processor: 1 1 32 33 93
Processor: 1 1 33 34 93
Processor: 1 1 34 35 93
Processor: 1 1 35 36 93
Processor: 1 1 36 37 93
Processor: 1 1 37 38 93
Processor: 1 1 38 39 93
Processor: 1 1 39 40 93
Processor: 1 1 40 41 93
Processor: 1 1 41 42 93
Processor: 1 1 42 43 93
Processor: 1 1 43 44 93
Processor: 1 1 44 45 93
Processor: 1 1 45 46 93
Processor: 1 1 46 47 93
Processor: 1 1 47 48 93
Processor: 1 1 48 49 93
Processor: 1 1 49 50 93
Processor: 1 1 50 51 93
Processor: 1 1 51 52 93
Processor: 1 1 52 53 93
Processor: 1 1 53 54 93
Processor: 1 1 54 55 93
Processor: 1 1 55 56 93
Processor: 1 1 56 57 93
Processor: 1 1 57 58 93
Processor: 1 1 58 59 93
Processor: 1 1 59 60 93
Processor: 1 1 60 61 93
Processor: 1 1 61 62 93
Processor: 1 1 62 63 93
Processor: 1 1 63 64 93
Processor: 1 1 64 65 93
Processor: 1 1 65 66 93
Processor: 1 1 66 67 93
Processor: 1 1 67 68 93
Processor: 1 1 68 69 93
Processor: 1 1 69 70 93
Processor: 1 1 70 71 93
Processor 0 CG Group 0 absolute rank 0
Processor: 1 1 71 72 93
Processor: 1 1 72 73 93
iatsc_s= 2 iatsc_e= 28
Processor: 1 1 73 74 93
Processor: 1 1 74 75 93
Processor: 1 1 75 76 93
Processor: 1 1 76 77 93
Processor: 1 1 77 78 93
Processor 0 CG group 0 absolute rank 0
Processor: 1 1 78 79 93
Processor: 1 1 79 80 93
Processor: 1 1 80 81 93
nele_int_tot 3828 my_ele_inds= 1 my_ele_inde
1914
Processor: 1 1 81 82 93
Processor: 1 1 82 83 93
Processor
CG group
Processor: 1 1 83 84 93
Processor: 1 1 84 85 93
Processor: 1 1 85 86 93
absolute rank
Processor: 1 1 86 87 93
Processor: 1 1 87 88 93
Processor: 1 1 88 89 93
Processor: 1 1 89 90 93
Processor: 1 1 90 91 93
Processor: 1 1 91 92 92
Processor: 0 CG group 0 absolute rank 0
loc_start 2 loc_end 46 ithet_start 3
ithet_end 47 iphi_start 5 iphi_end 48
iphid_start 5 iphid_end 48 ibond_start 2
ibond_end 46 ibondp_start 3 ibondp_end 47
iturn3_start 2 iturn3_end 45 iturn4_start 2
iturn4_end 45 ivec_start 1 ivec_end 46
iset_start 4 iset_end 48 idihconstr_start 1
idihconstr_end 0 ithetaconstr_start 1
ithetaconstr_end 0
Processor: 0 0 igrad_start 1 igrad_end
27 ngrad_start 1 ngrad_end 2093
Processor: 0 0 1 2 93
Processor: 0 0 2 3 93
Processor: 0 0 3 4 93
Processor: 0 0 4 5 93
Processor: 0 0 5 6 93
Processor: 0 0 6 7 93
Processor: 0 0 7 8 93
Processor: 0 0 8 9 93
[dell15:57591] *** Process received signal ***
[dell15:57591] Signal: Segmentation fault (11)
[dell15:57591] Signal code: Address not mapped (1)
[dell15:57591] Failing at address: 0x151c21718
[dell15:57591] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10330)[0x2b0076416330]
[dell15:57591] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x155c20)[0x2b00773f5c20]
[dell15:57591] [ 2] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(+0x6ce4c)[0x2b00751a9e4c]
[dell15:57591] [ 3] /opt/pgi/linux86-64-llvm/19.10/lib/libpgf90.so(pgf90io_fmt_writea+0xbe)[0x2b00751a71ce]
[dell15:57591] [ 4] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x41d94b]
[dell15:57591] [ 5] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x513fc5]
[dell15:57591] [ 6] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x51384f]
[dell15:57591] [ 7] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x404073]
[dell15:57591] [ 8] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x2b00772c1f45]
[dell15:57591] [ 9] /tmp/cdash/devel/build/bin/unresMD-mult_pgf90_MPI_E0LL2Y.exe[0x403f79]
[dell15:57591] *** End of error message ***
[dell15:57586] 1 more process has sent help message help-btl-vader.txt / cma-permission-denied
[dell15:57586] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 0 on node dell15 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
Processor: 0 0 9 10 93
Processor: 0 0 10 11 93
Processor: 0 0 11 12 93
Processor: 0 0 12 13 93
Processor: 0 0 13 14 93
Processor: 0 0 14 15 93
Processor: 0 0 15 16 93
Processor: 0 0 16 17 93
Processor: 0 0 17 18 93
Processor: 0 0 18 19 93
Processor: 0 0 19 20 93
Processor: 0 0 20 21 93
Processor: 0 0 21 22 93
Processor: 0 0 22 23 93
Processor: 0 0 23 24 93
Processor: 0 0 24 25 93
Processor: 0 0 25 26 93
Processor: 0 0 26 27 93
Processor: 0 0 27 28 79
after etotal
WARNING: energy is somewhat different .021300, ene= 443.288700
