Wednesday, September 25 2024 01:20:30
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The library attempted to open the following supporting CUDA libraries,
but each of them failed. CUDA-aware support is disabled.
libcuda.so.1: cannot open shared object file: No such file or directory
/usr/lib64/libcuda.so.1: cannot open shared object file: No such file or directory
If you are not interested in CUDA-aware support, then run with
--mca mpi_cuda_support 0 to suppress this message. If you are interested
in CUDA-aware support, then try setting LD_LIBRARY_PATH to the location
of libcuda.so.1 to get passed this issue.
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Processor 0 out of 4 rank in CG_COMM 0
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
Processor 1 out of 4 rank in CG_COMM 1
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 2 out of 4 rank in CG_COMM 2
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 3 out of 4 rank in CG_COMM 3
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
0 size of FG_COMM1 1
Inside initializeInside initializeInside initializeInside initialize thetname_pdb
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
51 opened
MPI: node= 2 iseed= -9179228
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Processor 2 0 0 ivec_start 1
ivec_end 21
MPI: node= 0 iseed= -3059742
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Processor 0 0 0 ivec_start 1
ivec_end 21
MPI: node= 3 iseed= -12238971
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Processor 3 0 0 ivec_start 1
ivec_end 21
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
MPI: node= 1 iseed= -6119485
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Processor 1 0 0 ivec_start 1
ivec_end 21
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
[dell15:110599] 3 more processes have sent help message help-mpi-common-cuda.txt / dlopen failed
[dell15:110599] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
UPDATING 97 97
UPDATING 100 100
UPDATING 100 100
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UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
End of minim, proc 2 time 121.5442500114441
End of minim, proc 1 time 121.5516300201416
End of cycle, master time for 41 iters 121.5997321605682
sec, Eval/s 12318.04522416310
End of minim, proc 3 time 121.6035950183868
UPDATING 3 4
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
UPDATING 97 97
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
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UPDATING 100 100
UPDATING 100 100
End of minim, proc 2 time 313.6487910747528
End of minim, proc 3 time 313.7152040004730
End of cycle, master time for 65 iters 185.6657638549805
sec, Eval/s 12346.23956730357
End of minim, proc 1 time 313.7353460788727
UPDATING 3 4
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
UPDATING 97 97
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
End of minim, proc 1 time 335.1731710433960
End of minim, proc 3 time 335.2290630340576
End of cycle, master time for 4 iters 15.39331007003784
sec, Eval/s 11963.50876855606
End of minim, proc 2 time 335.3504450321198
UPDATING 3 4
End of RUN, master time 335.3531370162964 sec, Eval/s
12306.82687724327
CG processor 1 is finishing work.
CG processor 3 is finishing work.
CG processor 2 is finishing work.
CG processor 0 is finishing work.
Warning: ieee_invalid is signaling
Warning: ieee_denorm is signaling
Warning: ieee_divide_by_zero is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Emin= 31.52678
Emin= 31.52678
Emin= 31.52678
Emin= 31.52678
difference .00001 from reference emin 31.52677
difference .00001 from reference emin 31.52677
difference .00001 from reference emin 31.52677
difference .00001 from reference emin 31.52677
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
