358.46s
Test: UNRES_CSA_local_E0LL2Y
(Passed)
Build: homology Linux-pgi-MPI E0LL2Y
(dell15)
on 2020-03-08 04:27:31
Repository revision: 86a7a0fff3fb6d1c18791c4d2723ee3173d2cf65
Show Command Line/opt/pgi/linux86-64/2017/mpi/openmpi/bin/mpirun "-np" "4" "/tmp/cdash/homology/build/source/unres/src_CSA/test_csa_E0LL2Y.sh" "1l2y_csa_local"
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Show Failing/Passing Graph
Test outputCTEST_FULL_OUTPUT
CTEST_FULL_OUTPUT
CTEST_FULL_OUTPUT
CTEST_FULL_OUTPUT
--------------------------------------------------------------------------
The library attempted to open the following supporting CUDA libraries,
but each of them failed. CUDA-aware support is disabled.
libcuda.so.1: cannot open shared object file: No such file or directory
/usr/lib64/libcuda.so.1: cannot open shared object file: No such file or directory
If you are not interested in CUDA-aware support, then run with
--mca mpi_cuda_support 0 to suppress this message. If you are interested
in CUDA-aware support, then try setting LD_LIBRARY_PATH to the location
of libcuda.so.1 to get passed this issue.
--------------------------------------------------------------------------
Processor 0 out of 4 rank in CG_COMM 0
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 2 out of 4 rank in CG_COMM 2
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 1 out of 4 rank in CG_COMM 1
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
Processor 3 out of 4 rank in CG_COMM 3
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
0 size of FG_COMM1 1
Inside initializeInside initializeInside initializeInside initialize thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
51 opened
MPI: node= 2 iseed= -9179228
MPI: node= 0 iseed= -3059742
indpdb= 0 pdbref= F
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Call Read_Bridge.
ns= 0
Processor 2 0 0 ivec_start 1
ivec_end 21
Processor 0 0 0 ivec_start 1
ivec_end 21
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
MPI: node= 3 iseed= -12238971
MPI: node= 1 iseed= -6119485
indpdb= 0 pdbref= F
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Call Read_Bridge.
ns= 0
Processor 3 0 0 ivec_start 1
ivec_end 21
Processor 1 0 0 ivec_start 1
ivec_end 21
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
[dell15:169774] 3 more processes have sent help message help-mpi-common-cuda.txt / dlopen failed
[dell15:169774] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
UPDATING 97 97
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UPDATING 100 100
End of minim, proc 1 time 113.3380379676819
End of minim, proc 2 time 113.3433930873871
End of cycle, master time for 38 iters 113.4461867809296
sec, Eval/s 12391.50508174076
End of minim, proc 3 time 113.4500927925110
UPDATING 3 4
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
UPDATING 97 97
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End of minim, proc 1 time 272.9530339241028
End of minim, proc 2 time 272.9530611038208
End of cycle, master time for 51 iters 153.0510280132294
sec, Eval/s 12402.26233459814
End of minim, proc 3 time 272.9535198211670
UPDATING 3 4
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
UPDATING 97 97
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End of minim, proc 2 time 351.4805159568787
End of minim, proc 1 time 351.4883320331573
End of cycle, master time for 21 iters 72.48578596115112
sec, Eval/s 12212.82197966998
End of minim, proc 3 time 351.6479449272156
UPDATING 3 4
End of RUN, master time 351.6507258415222 sec, Eval/s
12347.57582146103
CG processor 2 is finishing work.
CG processor 1 is finishing work.
CG processor 3 is finishing work.
CG processor 0 is finishing work.
Warning: ieee_denorm is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_overflow is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Emin= 31.52678
Emin= 31.52678
Emin= 31.52678
Emin= 31.52678
difference .00001 from reference emin 31.52677
difference .00001 from reference emin 31.52677
difference .00001 from reference emin 31.52677
difference .00001 from reference emin 31.52677
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory