Wednesday, September 25 2024 07:24:20
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361.11s
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The library attempted to open the following supporting CUDA libraries,
but each of them failed. CUDA-aware support is disabled.
libcuda.so.1: cannot open shared object file: No such file or directory
/usr/lib64/libcuda.so.1: cannot open shared object file: No such file or directory
If you are not interested in CUDA-aware support, then run with
--mca mpi_cuda_support 0 to suppress this message. If you are interested
in CUDA-aware support, then try setting LD_LIBRARY_PATH to the location
of libcuda.so.1 to get passed this issue.
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Processor 0 out of 4 rank in CG_COMM 0
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 2 out of 4 rank in CG_COMM 2
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 1 out of 4 rank in CG_COMM 1
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Processor 3 out of 4 rank in CG_COMM 3
size of CG_COMM 4 size of FG_COMM 1 rank in FG_COMM1
0 size of FG_COMM1 1
Inside initializeInside initializeInside initializeInside initialize thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
thetname_pdb
/tmp/cdash/homology/source/PARAM/thetaml.5parm
51 opened
MPI: node= 2 iseed= -9179228
MPI: node= 0 iseed= -3059742
MPI: node= 3 iseed= -12238971
MPI: node= 1 iseed= -6119485
indpdb= 0 pdbref= F
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Call Read_Bridge.
ns= 0
indpdb= 0 pdbref= F
indpdb= 0 pdbref= F
Call Read_Bridge.
ns= 0
Call Read_Bridge.
ns= 0
Processor 2 0 0 ivec_start 1
ivec_end 21
Processor 0 0 0 ivec_start 1
ivec_end 21
Processor 3 0 0 ivec_start 1
ivec_end 21
Processor 1 0 0 ivec_start 1
ivec_end 21
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
[dell15:166227] 3 more processes have sent help message help-mpi-common-cuda.txt / dlopen failed
[dell15:166227] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
UPDATING 97 97
UPDATING 100 100
UPDATING 100 100
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UPDATING 100 100
End of minim, proc 3 time 98.89269685745239
End of minim, proc 1 time 98.90473794937134
End of minim, proc 2 time 98.90794396400452
End of cycle, master time for 36 iters 98.90360403060913
sec, Eval/s 12393.76473703261
UPDATING 3 4
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
UPDATING 97 97
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
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End of minim, proc 1 time 264.0060648918152
End of minim, proc 3 time 264.0145158767700
End of cycle, master time for 50 iters 158.6464450359344
sec, Eval/s 12197.44318608395
End of minim, proc 2 time 264.0335481166840
UPDATING 3 4
Exitted from make_ranvar nconfr= 100
FEEDIN: NCONF= 100
UPDATING 97 97
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
UPDATING 100 100
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UPDATING 100 100
End of minim, proc 3 time 354.1375370025635
End of minim, proc 2 time 354.1481730937958
End of cycle, master time for 24 iters 84.07690405845642
sec, Eval/s 12016.85541724440
End of minim, proc 1 time 354.3450169563293
UPDATING 3 4
End of RUN, master time 354.3472199440002 sec, Eval/s
12202.83032186158
CG processor 0 is finishing work.
CG processor 2 is finishing work.
CG processor 1 is finishing work.
CG processor 3 is finishing work.
Warning: ieee_denorm is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Warning: ieee_denorm is signaling
Warning: ieee_underflow is signaling
Warning: ieee_inexact is signaling
Bye Bye...
Emin= 31.49431
Emin= 31.49431
Emin= 31.49431
Emin= 31.49431
difference .03246 from reference emin 31.52677
difference .03246 from reference emin 31.52677
difference .03246 from reference emin 31.52677
difference .03246 from reference emin 31.52677
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
grep: 1l2y_csa_local_4P*.pdb: No such file or directory
