Site Name: dell15 Build Name: devel Linux-gfortan-MPI-DFA NEWCORR
(view notes)
Stamp: 20240311-2203-Nightly
(related builds)
Time: 2024-03-12T03:47:36 CET Type: Nightly
OS Name: Linux OS Platform: x86_64 OS Release: 3.13.0-170-generic OS Version: #220-Ubuntu SMP Thu May 9 12:40:49 UTC 2019 Compiler Version: unknown CTest version: ctest-2.8.12.2
Start Time: 2024-03-12T03:47:34 CET End Time: 2024-03-12T03:47:34 CET Update Command: "/usr/bin/git" "fetch" Update Type: GIT Number of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2024-03-12T03:47:34 CET End Time: 2024-03-12T03:47:34 CET Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=NEWCORR -DUNRES_DFA=1 -DUNRES_CSA_FF=NEWCORR -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source" Configure Return Value: 0 Configure Output:
-- The Fortran compiler identification is GNU
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
[ 68%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minim_jlee.F.o
[ 68%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/fitsq.f.o
[ 68%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minim_mcmf.F.o
[ 69%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/misc.f.o
[ 69%] [ 69%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/moments.F.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/contact.f.o
[ 69%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MP.F.o
[ 70%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/elecont.f.o
[ 70%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/contfunc.f.o
[ 71%] [ 72%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MREMD.F.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/cont_frag.f.o
/.../source/source/unres/src-HCD-5D/MREMD.F:1400.29:
common /przechowalnia/ d_restart1,d_restart2
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (294912000 vs 147505152 bytes)
/.../source/source/unres/src-HCD-5D/MREMD.F:1809.28:
common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)
/.../source/source/unres/src-HCD-5D/MREMD.F:2004.28:
common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)
[ 72%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/conf_compar.F.o
/.../source/source/wham/src-HCD-5D/conf_compar.F:378.24:
write(istat,'(1x,$,20(i3,$))')
1
Warning: $ should be the last specifier in format at (1)
File: /tmp/cdash/devel/build/Warning: DO loop at
Line: 1
[ 78%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/mysort.f.o
[ 79%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/ssMD.F.o
[ 79%] [ 79%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/boxshift.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/permut.F.o
[ 79%] [ 80%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/dfa.F.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/cinfo.f.o
/.../source/source/wham/src-HCD-5D/dfa.F:1732.15:
do i=1,0
1
Warning: DO loop at (1) will be executed zero times
/.../source/source/wham/src-HCD-5D/dfa.F:1020.20:
common /sheca/ bx,by,bz
1
Warning: Named COMMON block 'sheca' at (1) shall be of the same size as elsewhere (168000 vs 19200 bytes)
/.../source/source/wham/src-HCD-5D/dfa.F:1021.19:
common /shee/ vbeta,vbet,vbetp,vbetm
1
Warning: Named COMMON block 'shee' at (1) shall be of the same size as elsewhere (392000024 vs 5120024 bytes)
/.../source/source/wham/src-HCD-5D/dfa.F:1023.19:
common /shef/ shefx, shefy, shefz
1
Warning: Named COMMON block 'shef' at (1) shall be of the same size as elsewhere (2016000 vs 230400 bytes)
/.../source/source/wham/src-HCD-5D/dfa.F:1022.20:
common /shetf/ shetfx,shetfy,shetfz
1
Warning: Named COMMON block 'shetf' at (1) shall be of the same size as elsewhere (168000 vs 19200 bytes)
[ 81%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/pinorm.f.o
[ 81%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/printmat.f.o
[ 81%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/prng_32.F.o
[ 82%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/q_measure.F.o
Linking Fortran executable ../../../bin/wham-mult_gfortran_MPI_NEWCORR_HCD-5D_DFA.exe
[ 82%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/ran.f.o
[ 82%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/randgens.f.o
[ 83%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/rattle.F.o
[ 83%] Built target UNRES_CLUSTER_WHAM_M_BIN
[ 83%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/readpdb-mult.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/sumsld.f.o
[ 88%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/surfatom.f.o
[ 88%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/thread.F.o
[ 89%] [ 89%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/timing.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/together.F.o
[ 89%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/unres.F.o
/.../source/source/unres/src-HCD-5D/unres.F:415.23:
common /lbfgstat/ status,niter,nfun
1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons
/.../source/source/unres/src-HCD-5D/unres.F:229.23:
common /lbfgstat/ status,niter,nfun
1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons
[ 89%] Built target UNRES_WHAM_M_BIN
[ 90%] [ 90%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/ssMD.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/mygauss.f.o
[ 91%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/econstr_qlike.F.o
[ 91%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/econstrq-PMF.F.o
[ 91%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/rmscalc.F.o
[ 92%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/chain_symmetry.F.o
[ 92%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/seq2chains.f.o
[ 93%] [ 93%] [ 93%] [ 94%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/PMFprocess.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cart2intgrad.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/iperm.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/lbfgs.F.o
/.../source/source/unres/src-HCD-5D/lbfgs.F:85.23:
common /lbfgstat/ status,niter,ncalls
1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons
[ 94%] [ 94%] [ 95%] [ 95%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/optsave_dum.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/fdisy.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/search.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/fdiag.f.o
[ 96%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/machpd.f.o
[ 96%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_CASC.F.o
[ 96%] [ 97%] [ 97%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/contact_cp.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/make_xx_list.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/int_from_cart.F.o
[ 97%] [ 97%] [ 98%] [ 99%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/dfa.F.o
File: /tmp/cdash/devel/build/Warning: DO loop at
Line: 1
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/orig_frame_chain.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gen_rand_conf_mchain.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new_barrier.F.o
/.../source/source/unres/src-HCD-5D/dfa.F:1818.15:
do i=1,0
1
Warning: DO loop at (1) will be executed zero times
/.../source/source/unres/src-HCD-5D/dfa.F:1106.20:
common /sheca/ bx,by,bz
1
Warning: Named COMMON block 'sheca' at (1) shall be of the same size as elsewhere (72000 vs 19200 bytes)
/.../source/source/unres/src-HCD-5D/dfa.F:1107.19:
common /shee/ vbeta,vbet,vbetp,vbetm
1
Warning: Named COMMON block 'shee' at (1) shall be of the same size as elsewhere (72000024 vs 5120024 bytes)
/.../source/source/unres/src-HCD-5D/dfa.F:1109.19:
common /shef/ shefx, shefy, shefz
1
Warning: Named COMMON block 'shef' at (1) shall be of the same size as elsewhere (864000 vs 230400 bytes)
/.../source/source/unres/src-HCD-5D/dfa.F:1108.20:
common /shetf/ shetfx,shetfy,shetfz
1
Warning: Named COMMON block 'shetf' at (1) shall be of the same size as elsewhere (72000 vs 19200 bytes)
[ 99%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o
/.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:3996.22:
common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij
1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)
/.../source/source/unres/src-HCD-5D/energy_p_new-sep_barrier.F:1625.22:
common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj
1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (32 vs 40 bytes)
[ 99%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gradient_p.F.o
[100%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cinfo.f.o
Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_NEWCORR_HCD-5D_DFA.exe