Site Name: dell15
Build Name: devel Linux-gfortan-MPI E0LL2Y (view notes)
Stamp: 20240226-2203-Nightly (related builds)
Time: 2024-02-27T03:45:05 CET
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.13.0-170-generic
OS Version: #220-Ubuntu SMP Thu May 9 12:40:49 UTC 2019
Compiler Version: unknown
CTest version: ctest-2.8.12.2

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Stage: Update (0 errors, 0 warnings)

Start Time: 2024-02-27T03:45:02 CET
End Time: 2024-02-27T03:45:03 CET
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2024-02-27T03:45:03 CET
End Time: 2024-02-27T03:45:03 CET
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=E0LL2Y -DUNRES_DFA=0 -DUNRES_CSA_FF=E0LL2Y -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source"
Configure Return Value: 0
Configure Output: 
-- The Fortran compiler identification is GNU
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build

View Configure Summary

Build (1 errors, 30 warnings)

Build command: /usr/bin/make -i -j4
Start Time: 2024-02-27T03:45:05 CET
End Time: 2024-02-27T03:45:35 CET

gfortran: error: unrecognized command line option ‘-shared-intel’

[100%] Built target UNRES_BIN-MD-M

View Errors Summary


Build Warnings (30)
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/arcos.f.o
[  8%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/enecalc1.F.o
[  9%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/cartprint.f.o
[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/output.f.o
[ 10%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/chainbuild.f.o
[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/scales.f.o
/.../source/source/cluster/wham/src-HCD-5D/energy_p_new.F:2365.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)

[ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/add.f.o
[ 10%] [ 10%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/contact.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/arcos.f.o
[ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/banach.f.o
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[ 12%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/fitsq.f.o
[ 12%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/bank.F.o
[ 13%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/geomout.F.o
/.../source/source/cluster/unres/src/geomout.F:166.37:

  180 format (I5,F12.3,I2,8(1X,2I3,$))                                  
                                     1

Warning: $ should be the last specifier in format at (1)

/.../source/source/cluster/unres/src/geomout.F:167.29:

  190 format (3X,11(1X,2I3,$))                                          
                             1

Warning: $ should be the last specifier in format at (1)

[ 13%] [ 13%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/energy_p_new.F.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/hc.f.o
[ 13%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/blas.f.o
[ 13%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/initialize.f.o
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[ 14%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/main_clust.F.o
[ 15%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/bond_move.f.o
/.../source/source/wham/src-HCD-5D/energy_p_new.F:2384.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)

[ 15%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cartprint.f.o
[ 16%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/chainbuild.F.o
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[ 17%] [ 17%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/checkder_p.F.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/misc.f.o
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[ 19%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/check_sc_distr.f.o
[ 29%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/econstr_local.F.o
Linking Fortran executable ../../../bin/xdrf2pdb-m
[ 29%] Built target UNRES_XDRF2PDBM_BIN-M
[ 29%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/eigen.f.o
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/.../source/source/cluster/wham/src-HCD-5D/geomout.F:189.40:

  180 format (I5,2F12.3,I2,$,8(1X,2I3,$))                               
                                        1

Warning: $ should be the last specifier in format at (1)

/.../source/source/cluster/wham/src-HCD-5D/geomout.F:190.29:

  190 format (3X,11(1X,2I3,$))                                          
                             1

Warning: $ should be the last specifier in format at (1)

[ 29%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/gnmr1.f.o
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Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/hc.f.o
[ 31%] [ 31%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_split-sep.F.o
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[ 31%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/initialize_p.F.o
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[ 34%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/int_from_cart1.f.o
Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/nazwy.f.o
[ 41%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/seq2chains.f.o
[ 41%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/initialize_p.F.o
Linking Fortran executable ../../../bin/xdrf2pdb
[ 41%] Built target UNRES_XDRF2PDB_BIN-M
[ 41%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/intcartderiv.F.o
/.../source/source/unres/src-HCD-5D/initialize_p.F:463.28:

      common /przechowalnia/ iturn3_start_all(0:max_fg_procs),          
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (6676504 vs 6150168 bytes)

[ 41%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/read_constr_homology.F.o
[ 42%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/arcos.f.o
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Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/intcor.f.o
Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/cartprint.f.o
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Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_lesyng.F.o
/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:452.35:

            call sccenter(ires,iii,sccor)                               
                                   1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:474.43:

                call sccenter(ires_old,iii,sccor)                       
                                           1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:606.31:

        call sccenter(ires,iii,sccor)                                   
                               1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

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[ 53%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readrtns.F.o
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Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/mcm.F.o
[ 54%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o
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/.../source/source/unres/src-HCD-5D/MD_A-MTS.F:1656.23:

      common /lbfgstat/ status,niter,nfun                               
                       1

Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons

[ 56%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/seq2chains.f.o
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/.../source/source/unres/src-HCD-5D/MREMD.F:1400.29:

       common /przechowalnia/ d_restart1,d_restart2                     
                             1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (294912000 vs 147505152 bytes)

/.../source/source/unres/src-HCD-5D/MREMD.F:1809.28:

      common /przechowalnia/ d_restart1                                 
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)

/.../source/source/unres/src-HCD-5D/MREMD.F:2004.28:

      common /przechowalnia/ d_restart1                                 
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes)

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Build Log line 272


  File: source/wham/src-HCD-5D/oligomer.F
  Line: 37 
[ 70%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/boxshift.f.o
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/.../source/source/wham/src-HCD-5D/oligomer.F:37:0: warning: extra tokens at end of #endif directive [enabled by default]

 #endif DEBUG
 ^

Build Log line 275


  File: source/wham/src-HCD-5D/oligomer.F
  Line: 87 
/.../source/source/wham/src-HCD-5D/oligomer.F:87:0: warning: extra tokens at end of #endif directive [enabled by default]

 #endif;
 ^
[ 71%] Building C object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
[ 71%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/parmread.F.o
Linking Fortran executable ../../../../bin/cluster_wham-mult_gfortran_MPI_E0LL2Y_HCD-5D.exe
[ 72%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/readrtns_compar.F.o
[ 72%] Built target UNRES_CLUSTER_WHAM_M_BIN
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/.../source/source/wham/src-HCD-5D/readpdb-mult.F:454.35:

            call sccenter(ires,iii,sccor)                               
                                   1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/wham/src-HCD-5D/readpdb-mult.F:476.43:

                call sccenter(ires_old,iii,sccor)                       
                                           1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

/.../source/source/wham/src-HCD-5D/readpdb-mult.F:608.31:

        call sccenter(ires,iii,sccor)                                   
                               1

Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)

[ 72%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/fitsq.f.o
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/.../source/source/wham/src-HCD-5D/conf_compar.F:378.24:
            write(istat,'(1x,$,20(i3,$))')                              
                        1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:381.25:

              write(istat,'(1x,$,20(f5.1,f5.2$))')                      
                         1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:384.25:

              write(istat,'(1x,$,20(f5.1$))')                           
                         1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:387.24:

            write(istat,'(1x,$,20(i1,$))')                              
                        1

Warning: $ should be the last specifier in format at (1)

/.../source/source/wham/src-HCD-5D/conf_compar.F:393.27:

              write (istat,'(100(i1,$))')(iclass(k,j),                  
                           1

Warning: $ should be the last specifier in format at (1)

[ 76%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/match_contact.f.o
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/.../source/source/unres/src-HCD-5D/unres.F:415.23:

      common /lbfgstat/ status,niter,nfun                               
                       1

Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons

[ 90%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/ssMD.F.o
/.../source/source/unres/src-HCD-5D/unres.F:229.23:

      common /lbfgstat/ status,niter,nfun                               
                       1

Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons

[ 91%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/mygauss.f.o
[ 91%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/econstr_qlike.F.o
[ 91%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/econstrq-PMF.F.o
[ 92%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/rmscalc.F.o
[ 92%] [ 92%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/chain_symmetry.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/seq2chains.f.o
[ 93%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/iperm.f.o
[ 93%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/PMFprocess.F.o
[ 94%] [ 94%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cart2intgrad.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/lbfgs.F.o
/.../source/source/unres/src-HCD-5D/lbfgs.F:85.23:

      common /lbfgstat/ status,niter,ncalls                             
                       1

Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons

[ 94%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/search.f.o
[ 95%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/optsave_dum.f.o
[ 95%] [ 96%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/fdisy.f.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/fdiag.f.o
[ 96%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/machpd.f.o
[ 96%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_CASC.F.o
[ 97%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/contact_cp.F.o
[ 97%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/make_xx_list.F.o
[ 98%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/int_from_cart.F.o
[ 98%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gen_rand_conf_mchain.F.o
[ 98%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/orig_frame_chain.F.o
[ 99%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new_barrier.F.o
[ 99%] [100%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o
Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/gradient_p.F.o
/.../source/source/unres/src-HCD-5D/energy_p_new-sep_barrier.F:1625.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj              
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (32 vs 40 bytes)

[100%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/cinfo.f.o
/.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:9167.28:

      common /przechowalnia/ zapas                                      
                            1

Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (430080000 vs 159744000 bytes)

/.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:3996.22:

      common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij     
                      1

Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes)

Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_E0LL2Y_HCD-5D.exe


View Warnings Summary


Test (11  passed, 19 failed, 0 not run)
 
View Tests Summary