Site Name: m10 Build Name: devel Linux-gfortan-MPI E0LL2Y
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Stamp: 20240216-2203-Nightly
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Time: 2024-02-17T03:47:09 CETType: NightlyOS Name: LinuxOS Platform: x86_64OS Release: 4.15.0-213-genericOS Version: #224-Ubuntu SMP Mon Jun 19 13:30:12 UTC 2023CTest version: ctest-3.10.2History
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Stage: Update (0 errors, 0 warnings)
Start Time: 2024-02-17T03:47:02 CETEnd Time: 2024-02-17T03:47:03 CETUpdate Command: "/usr/bin/git" "fetch"Update Type: GITNumber of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2024-02-17T03:47:03 CETEnd Time: 2024-02-17T03:47:03 CETConfigure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=E0LL2Y -DUNRES_DFA=0 -DUNRES_CSA_FF=E0LL2Y -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source"Configure Return Value: 0Configure Output: -- The Fortran compiler identification is GNU 7.5.0
-- The C compiler identification is GNU 7.5.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
MPI found
Detected 64-bit architecture
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
View Configure Summary
Build (1 errors, 30 warnings)
Build command: /usr/bin/cmake --build . --config "Release" -- -i -j4 Start Time: 2024-02-17T03:47:09 CETEnd Time: 2024-02-17T03:47:39 CETgfortran: error: unrecognized command line option '-shared-intel'; did you mean '-shared-libgcc'? [100%] Built target UNRES_BIN-MD-M
View Errors Summary
Build Warnings (30)
[ 8%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minima.f.o
[ 8%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/enecalc1.F.o
[ 9%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/energy_p_new.F.o
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/.../source/source/cluster/wham/src-HCD-5D/energy_p_new.F:2365:22:
common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij
1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes) [ 10%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/arcos.f.o
[ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/banach.f.o
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/.../source/source/wham/src-HCD-5D/energy_p_new.F:2384:22:
common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij
1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes) [ 11%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/blas.f.o
[ 12%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/fitsq.f.o
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[ 13%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/bond_move.f.o
/.../source/source/cluster/wham/src-HCD-5D/geomout.F:189:40:
180 format (I5,2F12.3,I2,$,8(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1) /.../source/source/cluster/wham/src-HCD-5D/geomout.F:190:29:
190 format (3X,11(1X,2I3,$))
1
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[ 13%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/gnmr1.f.o
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[ 16%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/compare_s1.F.o
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[ 21%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/diff12.f.o
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[ 23%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/geomout.F.o
/.../source/source/cluster/unres/src/geomout.F:166:37:
180 format (I5,F12.3,I2,8(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1) /.../source/source/cluster/unres/src/geomout.F:167:29:
190 format (3X,11(1X,2I3,$))
1
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[ 23%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/hc.f.o
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[ 25%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/intcor.f.o
[ 25%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/elecont.f.o
[ 25%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/int_from_cart1.f.o
[ 25%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/matmult.f.o [ 37%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/indexx.f.o
[ 38%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/chainbuild.F.o
[ 38%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDBM_BIN-M.dir/geomout.F.o
[ 39%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/initialize_p.F.o
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/.../source/source/unres/src-HCD-5D/initialize_p.F:463:28:
common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
1
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[ 44%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDBM_BIN-M.dir/seq2chains.f.o [ 45%] Linking Fortran executable ../../../bin/xdrf2pdb-m
[ 45%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_coords.F.o
[ 45%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/refsys.f.o
[ 45%] Built target UNRES_XDRF2PDBM_BIN-M
[ 45%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/make_ensemble1.F.o
[ 45%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readpdb-mult.F.o
/.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:452:35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:474:43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/cluster/wham/src-HCD-5D/readpdb-mult.F:606:31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] [ 45%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/intcartderiv.F.o
[ 46%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/matmult.f.o
[ 46%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/misc.f.o
[ 46%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/mygetenv.F.o
[ 47%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/parmread.F.o
[ 48%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readrtns.F.o
[ 48%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/rescode.f.o
[ 48%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/intcor.f.o
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[ 49%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/int_to_cart.f.o [ 63%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o
[ 64%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/rmscalc.F.o
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[ 64%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o
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[ 64%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_calc1.F.o
/.../source/source/unres/src-HCD-5D/MD_A-MTS.F:1656:23:
common /lbfgstat/ status,niter,nfun
1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons [-Walign-commons] [ 65%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/PMFprocess.F.o
[ 66%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/refsys.f.o
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[ 66%] Building Fortran object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_constr_homology.F.o
[ 66%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/oligomer.F.o
/.../source/source/wham/src-HCD-5D/oligomer.F:37:0:
#endif DEBUG
Warning: extra tokens at end of #endif directive /.../source/source/wham/src-HCD-5D/oligomer.F:87:0:
#endif;
Warning: extra tokens at end of #endif directive [ 67%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/minim_mcmf.F.o
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/.../source/source/wham/src-HCD-5D/readpdb-mult.F:454:35:
call sccenter(ires,iii,sccor) 1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/wham/src-HCD-5D/readpdb-mult.F:476:43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] [ 69%] Building C object source/cluster/wham/src-HCD-5D/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
/.../source/source/wham/src-HCD-5D/readpdb-mult.F:608:31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] [ 70%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/moments.F.o
[ 71%] Linking Fortran executable ../../../../bin/cluster_wham-mult_gfortran_MPI_E0LL2Y_HCD-5D.exe
[ 71%] Built target UNRES_CLUSTER_WHAM_M_BIN
[ 71%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MP.F.o
[ 71%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/MREMD.F.o
[ 72%] Building Fortran object source/wham/src-HCD-5D/CMakeFiles/UNRES_WHAM_M_BIN.dir/contact.f.o
/.../source/source/unres/src-HCD-5D/MREMD.F:1400:29:
common /przechowalnia/ d_restart1,d_restart2
1 Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (294912000 vs 147505152 bytes) /.../source/source/unres/src-HCD-5D/MREMD.F:1809:28:
common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (147456000 vs 294912000 bytes) /.../source/source/unres/src-HCD-5D/MREMD.F:2004:28:
common /przechowalnia/ d_restart1
1
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/.../source/source/wham/src-HCD-5D/conf_compar.F:378:24:
write(istat,'(1x,$,20(i3,$))') 1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-HCD-5D/conf_compar.F:381:25:
write(istat,'(1x,$,20(f5.1,f5.2$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-HCD-5D/conf_compar.F:384:25:
write(istat,'(1x,$,20(f5.1$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-HCD-5D/conf_compar.F:387:24:
write(istat,'(1x,$,20(i1,$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-HCD-5D/conf_compar.F:393:27:
write (istat,'(100(i1,$))')(iclass(k,j),
1
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common /lbfgstat/ status,niter,nfun
1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons [-Walign-commons] /.../source/source/unres/src-HCD-5D/unres.F:229:23:
common /lbfgstat/ status,niter,nfun
1
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common /lbfgstat/ status,niter,ncalls
1
Warning: Padding of 3 bytes required before 'niter' in COMMON 'lbfgstat' at (1); reorder elements or use -fno-align-commons [-Walign-commons] [ 94%] Building Fortran object source/unres/src-HCD-5D/CMakeFiles/UNRES_BIN-MD-M.dir/search.f.o
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common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj
1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (32 vs 40 bytes) /.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:9167:28:
common /przechowalnia/ zapas
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (430080000 vs 159744000 bytes) /.../source/source/unres/src-HCD-5D/energy_p_new_barrier.F:3996:22:
common /lipcalc/ sslipi,sslipj,ssgradlipi,ssgradlipj,faclipij
1
Warning: Named COMMON block 'lipcalc' at (1) shall be of the same size as elsewhere (40 vs 32 bytes) [100%] Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_E0LL2Y_HCD-5D.exe
View Warnings Summary
Test (11 passed, 19 failed, 0 not run)
View Tests Summary