Site Name: dell15 Build Name: devel Linux-ifort-MPI-DFA_no5D NEWCORR
(view notes)
Stamp: 20230425-2203-Nightly
(related builds)
Time: 2023-04-26T05:09:22 CEST Type: Nightly
OS Name: Linux OS Platform: x86_64 OS Release: 3.13.0-170-generic OS Version: #220-Ubuntu SMP Thu May 9 12:40:49 UTC 2019 Compiler Version: unknown CTest version: ctest-2.8.12.2
Start Time: 2023-04-26T05:09:20 CEST End Time: 2023-04-26T05:09:20 CEST Update Command: "/usr/bin/git" "fetch" Update Type: GIT Number of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2023-04-26T05:09:20 CEST End Time: 2023-04-26T05:09:20 CEST Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=ifort -DUNRES_NO5D=1 -DUNRES_MD_FF=NEWCORR -DUNRES_DFA=1 -DUNRES_CSA_FF=NEWCORR -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source" Configure Return Value: 0 Configure Output:
-- The Fortran compiler identification is Intel
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/ifort
-- Check for working Fortran compiler: /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/ifort -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/ifort supports Fortran 90
-- Checking whether /opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64/ifort supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
Build command: /usr/bin/make -i -j4 Start Time: 2023-04-26T05:09:22 CEST End Time: 2023-04-26T05:10:34 CEST
[ 2%] [ 3%] Building C object source/lib/xdrf/CMakeFiles/xdrf.dir/libxdrf.c.o
Building C object source/lib/xdrf/CMakeFiles/xdrf.dir/ftocstr.c.o
Linking C static library libxdrf.a
[ 3%] Built target xdrf
Scanning dependencies of target UNRES_CLUSTER_WHAM_M_BIN
Scanning dependencies of target UNRES_WHAM_M_BIN
[ 4%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/arcos.f.o
[ 4%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o
Scanning dependencies of target UNRES_BIN-MD-M
[ 4%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/add.f.o
ifort: error #10052: could not checkout FLEXlm license
Linking Fortran executable ../../bin/generator
ifort: error #10236: File not found: 'CMakeFiles/UNRES_DOCK_BIN.dir/generator.f.o'
ifort: command line remark #10148: option '-i_dynamic' not supported
ifort: command line error: no files specified; for help type "ifort -help"
[ 4%] Built target UNRES_DOCK_BIN
[ 4%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/arcos.f.o
Scanning dependencies of target UNRES_CLUSTER_BIN
[ 4%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/arcos.f.o
[ 5%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/cartprint.f.o
[ 5%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/chainbuild.f.o
ifort: error #10052: could not checkout FLEXlm license
ifort: error #10052: could not checkout FLEXlm license
[ 5%] [ 5%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/contact.f.o
[ 6%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/cartprint.f.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/bxread.F.o
[ 7%] [ 8%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/chainbuild.f.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/convert.f.o
ifort: error #10052: could not checkout FLEXlm license
[ 9%] [ 9%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/banach.f.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/xread.F.o
[ 9%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/fitsq.f.o
[ 9%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/contact.f.o
[ 9%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/cxread.F.o
[ 9%] [ 9%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/bank.F.o
Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/convert.f.o
[ 10%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/energy_p_new.F.o
[ 12%] [ 12%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/geomout.F.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/enecalc1.F.o
[ 79%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/rmscalc.F.o
[ 80%] [ 80%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/secondary.f.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/proc_cont.f.o
[ 81%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/cinfo.f.o
[ 82%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/define_pairs.f.o
[ 82%] Building C object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
[ 82%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/mysort.f.o
[ 83%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/permut.F.o
Linking Fortran executable ../../../../bin/cluster_wham-mult_ifort_MPI_NEWCORR_DFA.exe
[ 83%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/ssMD.F.o
ifort: error #10236: File not found: 'CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/arcos.f.o'
ifort: command line remark #10148: option '-i_dynamic' not supported
[ 83%] Built target UNRES_CLUSTER_WHAM_M_BIN
[ 84%] [ 84%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/dfa.F.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/cinfo.f.o
[ 84%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/pinorm.f.o
[ 84%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/printmat.f.o
[ 85%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/prng_32.F.o
[ 85%] [ 86%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/q_measure.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/ran.f.o
[ 86%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/randgens.f.o
[ 87%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rattle.F.o
[ 87%] [ 87%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/readpdb.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/readrtns_CSA.F.o
Linking Fortran executable ../../../bin/wham-mult_ifort_MPI_NEWCORR_DFA.exe
ifort: error #10236: File not found: 'CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_multparm.F.o'
ifort: command line remark #10148: option '-i_dynamic' not supported
[ 87%] Built target UNRES_WHAM_M_BIN
[ 88%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/refsys.f.o
[ 88%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/regularize.F.o
[ 89%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rescode.f.o
[ 89%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rmdd.f.o
[ 89%] [ 90%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rmsd.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sc_move.F.o
[ 90%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/shift.F.o
[ 91%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sort.f.o
[ 96%] [ 97%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/chain_symmetry.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/seq2chains.f.o
[ 97%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/iperm.f.o
[ 98%] [ 98%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/PMFprocess.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/dfa.F.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new_barrier.F.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/gradient_p.F.o
[100%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/cinfo.f.o
Linking Fortran executable ../../../bin/unresMD-mult_ifort_MPI_NEWCORR_DFA.exe
ifort: error #10236: File not found: 'CMakeFiles/UNRES_BIN-MD-M.dir/add.f.o'
ifort: command line remark #10148: option '-i_dynamic' not supported
[100%] Built target UNRES_BIN-MD-M