Site Name: dell15 Build Name: devel Linux-gfortan-MPI NEWCORR
(view notes)
Stamp: 20200326-2203-Nightly
(related builds)
Time: 2020-03-27T04:02:59 CET Type: Nightly
OS Name: Linux OS Platform: x86_64 OS Release: 3.13.0-153-generic OS Version: #203-Ubuntu SMP Thu Jun 14 08:52:28 UTC 2018 Compiler Version: unknown CTest version: ctest-2.8.12.2
Start Time: 2020-03-27T04:02:57 CET End Time: 2020-03-27T04:02:57 CET Update Command: "/usr/bin/git" "fetch" Update Type: GIT Number of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2020-03-27T04:02:57 CET End Time: 2020-03-27T04:02:57 CET Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=NEWCORR -DUNRES_DFA=0 -DUNRES_CSA_FF=NEWCORR -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source" Configure Return Value: 0 Configure Output:
-- The Fortran compiler identification is GNU
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
[ 51%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/refsys.f.o
[ 52%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_lesyng.f.o
[ 53%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/make_ensemble1.F.o
[ 53%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/lagrangian_lesyng.F.o
COMMON.LANGEVIN.lang0:6.23:
Included at /.../source/source/unres/src_MD-M-SAXS-homology/lagrangian_lesyng.F:629:
common /langforc/ friction,stochforc,
1
Warning: Named COMMON block 'langforc' at (1) shall be of the same size as elsewhere (92448104 vs 92448152 bytes)
[ 53%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/local_move.f.o
[ 53%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/matmult.f.o
[ 53%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/misc.f.o
[ 54%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/mygetenv.F.o
[ 55%] [ 55%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/map.f.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/parmread.F.o
[ 56%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/permut.F.o
[ 56%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/matmult.f.o
[ 56%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/rescode.f.o
[ 57%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/mc.F.o
[ 58%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/srtclust.f.o
[ 59%] [ 59%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/ssMD.F.o
Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/timing.F.o
[ 59%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/track.F.o
[ 59%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o
[ 60%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o
/.../source/source/unres/src_MD-M-SAXS-homology/minimize_p.F:424.28:
common /przechowalnia/ v
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (207850216 vs 46080000 bytes)
[ 61%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/wrtclust.f.o
[ 61%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/work_partition.F.o
[ 61%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/seq2chains.f.o
[ 62%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_ref_str.F.o
[ 63%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/chain_symmetry.F.o
[ 63%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/seq2chains.f.o
[ 63%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/chain_symmetry.F.o
[ 63%] [ 63%] [ 64%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/minim_jlee.F.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/iperm.f.o
Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/iperm.f.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/MP.F.o
[ 70%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/store_parm.F.o
[ 70%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_constr_homology.F.o
[ 70%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/cinfo.f.o
[ 70%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/MREMD.F.o
[ 71%] Building C object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1326.29:
common /przechowalnia/ d_restart1,d_restart2
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (117964800 vs 59031552 bytes)
/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1723.28:
common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (58982400 vs 117964800 bytes)
/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1911.28:
common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (58982400 vs 117964800 bytes)
[ 72%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/timing.F.o
[ 73%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/muca_md.f.o
Linking Fortran executable ../../../../bin/cluster_wham-mult_gfortran_MPI_NEWCORR.exe
[ 73%] Built target UNRES_CLUSTER_WHAM_M_BIN
[ 73%] [ 73%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/newconf.f.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/wham_calc1.F.o
[ 74%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/PMFprocess.F.o
[ 75%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/parmread.F.o
[ 75%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/oligomer.F.o
[ 75%] [ 76%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/permut.F.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/readrtns_compar.F.o
[ 76%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/readpdb.F.o
/.../source/source/wham/src-M-SAXS-homology/readpdb.F:485.35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
[ 84%] [ 84%] [ 84%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/odlodc.f.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/readrtns_CSA.F.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/promienie.f.o
[ 85%] [ 85%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/qwolynes.f.o
[ 86%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/refsys.f.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/regularize.F.o
[ 86%] [ 86%] [ 86%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/read_ref_str.F.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/rmscalc.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rescode.f.o
[ 87%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/secondary.f.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/shift.F.o
[ 90%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/mysort.f.o
[ 91%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/ssMD.F.o
[ 91%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sort.f.o
[ 91%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/cinfo.f.o
[ 92%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/stochfric.F.o
/.../source/source/unres/src_MD-M-SAXS-homology/stochfric.F:349.28:
common /przechowalnia/ ginvfric,Ghalf,fcopy
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (115209600 vs 46080000 bytes)
/.../source/source/unres/src_MD-M-SAXS-homology/stochfric.F:346.20:
common /syfek/ gamvec
1
Warning: Named COMMON block 'syfek' at (1) shall be of the same size as elsewhere (19200 vs 57600 bytes)
[ 92%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sumsld.f.o
Linking Fortran executable ../../../bin/wham-mult_gfortran_MPI_NEWCORR.exe
[ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/surfatom.f.o
[ 93%] Built target UNRES_WHAM_M_BIN
[ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/test.F.o
[ 93%] [ 94%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/thread.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/timing.F.o
[ 94%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/together.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/unres.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/ssMD.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/iperm.f.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/PMFprocess.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new_barrier.F.o
[ 99%] [100%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/gradient_p.F.o
[100%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/cinfo.f.o
/.../source/source/unres/src_MD-M-SAXS-homology/energy_p_new_barrier.F:9207.28:
common /przechowalnia/ zapas
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (172032000 vs 63897600 bytes)
Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_NEWCORR.exe
[100%] Built target UNRES_BIN-MD-M