Site Name: m10 Build Name: devel Linux-gfortan-MPI E0LL2Y
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Stamp: 20200321-2203-Nightly
(related builds )
Time: 2020-03-22T02:45:08 CETType: NightlyOS Name: LinuxOS Platform: x86_64OS Release: 4.15.0-55-genericOS Version: #60-Ubuntu SMP Tue Jul 2 18:22:20 UTC 2019CTest version: ctest-3.10.2History
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Stage: Update (0 errors, 0 warnings)
Start Time: 2020-03-22T02:45:02 CETEnd Time: 2020-03-22T02:45:04 CETUpdate Command: "/usr/bin/git" "fetch"Update Type: GITNumber of Updates: 14
Configure (0 errors, 0 warnings)
Start Time: 2020-03-22T02:45:04 CETEnd Time: 2020-03-22T02:45:04 CETConfigure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=E0LL2Y -DUNRES_DFA=0 -DUNRES_CSA_FF=E0LL2Y -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source"Configure Return Value: 0Configure Output: -- The Fortran compiler identification is GNU 7.5.0
-- The C compiler identification is GNU 7.5.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
MPI found
Detected 64-bit architecture
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
View Configure Summary
Build (0 errors, 27 warnings)
Build command: /usr/bin/cmake --build . --config "Release" -- -i -j4 Start Time: 2020-03-22T02:45:08 CETEnd Time: 2020-03-22T02:45:26 CETView Errors Summary
Build Warnings (27)
[ 10%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/contact.f.o
[ 11%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/enecalc1.F.o
[ 11%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/convert.f.o
[ 12%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/fitsq.f.o
[ 13%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/blas.f.o
[ 13%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/geomout.F.o
/.../source/source/cluster/unres/src/geomout.F:166:37:
180 format (I5,F12.3,I2,8(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1) /.../source/source/cluster/unres/src/geomout.F:167:29:
190 format (3X,11(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1) [ 13%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/bond_move.f.o
[ 14%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/hc.f.o
[ 14%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/energy_p_new.F.o
[ 14%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/cartder.F.o
[ 14%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/initialize.f.o
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[ 15%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/cartprint.f.o
[ 16%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/main_clust.F.o
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[ 17%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/check_bond.f.o [ 24%] Linking Fortran executable ../../../../bin/cluster_unres_gfortran.exe
[ 24%] Built target UNRES_CLUSTER_BIN
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[ 24%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/csa.f.o
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[ 25%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/geomout.F.o
/.../source/source/cluster/wham/src-M-SAXS-homology/geomout.F:173:40:
180 format (I5,2F12.3,I2,$,8(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1) /.../source/source/cluster/wham/src-M-SAXS-homology/geomout.F:174:29:
190 format (3X,11(1X,2I3,$))
1
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[ 26%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/distfit.f.o
[ 26%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/djacob.f.o
[ 27%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/gnmr1.f.o
[ 27%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/econstr_local.F.o
[ 28%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/eigen.f.o
[ 28%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/hc.f.o
[ 28%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/elecont.f.o
[ 29%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/icant.f.o
[ 29%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/initialize_p.F.o [ 39%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/read_constr_homology.F.o
[ 39%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/gnmr1.f.o
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[ 40%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/initialize_p.F.o
[ 40%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/intcartderiv.F.o
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/.../source/source/unres/src_MD-M-SAXS-homology/initialize_p.F:432:28:
common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
1
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[ 41%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/permut.F.o
[ 41%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/cartprint.f.o
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Scanning dependencies of target UNRES_XDRF2PDB_BIN-M
[ 44%] Building Fortran object source/xdrfpdb/src-M/CMakeFiles/UNRES_XDRF2PDB_BIN-M.dir/xdrf2pdb.F.o [ 48%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/refsys.f.o
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[ 49%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readpdb.F.o
[ 50%] Linking Fortran executable ../../../bin/xdrf2pdb
/.../source/source/cluster/wham/src-M-SAXS-homology/readpdb.F:484:35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/cluster/wham/src-M-SAXS-homology/readpdb.F:506:43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/cluster/wham/src-M-SAXS-homology/readpdb.F:638:31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] [ 50%] Built target UNRES_XDRF2PDB_BIN-M
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COMMON.LANGEVIN.lang0:6:23:
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[ 60%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/mcm.F.o [ 65%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/TMscore.F.o
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/.../source/source/unres/src_MD-M-SAXS-homology/minimize_p.F:424:28:
common /przechowalnia/ v
1
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[ 71%] Building C object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o [ 71%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/moments.f.o
[ 72%] Linking Fortran executable ../../../../bin/cluster_wham-mult_gfortran_MPI_E0LL2Y.exe
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/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1326:29:
common /przechowalnia/ d_restart1,d_restart2
1
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common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (58982400 vs 117964800 bytes) /.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1911:28:
common /przechowalnia/ d_restart1
1
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[ 76%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/readpdb.F.o
/.../source/source/wham/src-M-SAXS-homology/readpdb.F:485:35:
call sccenter(ires,iii,sccor)
1 Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/wham/src-M-SAXS-homology/readpdb.F:507:43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/wham/src-M-SAXS-homology/readpdb.F:639:31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] [ 76%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/fitsq.f.o
[ 77%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/contact.f.o
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[ 80%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/match_contact.f.o /.../source/source/wham/src-M-SAXS-homology/conf_compar.F:378:24:
write(istat,'(1x,$,20(i3,$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-M-SAXS-homology/conf_compar.F:381:25:
write(istat,'(1x,$,20(f5.1,f5.2$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-M-SAXS-homology/conf_compar.F:384:25:
write(istat,'(1x,$,20(f5.1$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-M-SAXS-homology/conf_compar.F:387:24:
write(istat,'(1x,$,20(i1,$))')
1
Warning: $ should be the last specifier in format at (1) /.../source/source/wham/src-M-SAXS-homology/conf_compar.F:393:27:
write (istat,'(100(i1,$))')(iclass(k,j),
1
Warning: $ should be the last specifier in format at (1) [ 80%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/angnorm.f.o
[ 81%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/prng_32.F.o
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/.../source/source/unres/src_MD-M-SAXS-homology/readpdb.F:625:35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/unres/src_MD-M-SAXS-homology/readpdb.F:647:43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] /.../source/source/unres/src_MD-M-SAXS-homology/readpdb.F:780:31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1) [-Wargument-mismatch] [ 86%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/refsys.f.o
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[ 87%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rescode.f.o
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[ 90%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sc_move.F.o [ 91%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/shift.F.o
[ 91%] Linking Fortran executable ../../../bin/wham-mult_gfortran_MPI_E0LL2Y.exe
[ 91%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sort.f.o
[ 91%] Built target UNRES_WHAM_M_BIN
[ 92%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/stochfric.F.o
[ 92%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sumsld.f.o
/.../source/source/unres/src_MD-M-SAXS-homology/stochfric.F:349:28:
common /przechowalnia/ ginvfric,Ghalf,fcopy
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (115209600 vs 46080000 bytes) /.../source/source/unres/src_MD-M-SAXS-homology/stochfric.F:346:20:
common /syfek/ gamvec
1
Warning: Named COMMON block 'syfek' at (1) shall be of the same size as elsewhere (19200 vs 57600 bytes) [ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/surfatom.f.o
[ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/thread.F.o
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[ 94%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/timing.F.o
[ 94%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/together.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/unres.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/ssMD.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/mygauss.f.o
[ 96%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/econstr_qlike.F.o
[ 96%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/econstrq-PMF.F.o [ 98%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/iperm.f.o
[ 98%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/PMFprocess.F.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new_barrier.F.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o
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[100%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/cinfo.f.o
/.../source/source/unres/src_MD-M-SAXS-homology/energy_p_new_barrier.F:9207:28:
common /przechowalnia/ zapas
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (172032000 vs 63897600 bytes) [100%] Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_E0LL2Y.exe
[100%] Built target UNRES_BIN-MD-M
View Warnings Summary
Test (27 passed, 3 failed, 0 not run)
View Tests Summary