Site Name: dell15 Build Name: devel Linux-gfortan-MPI E0LL2Y
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Stamp: 20200320-2203-Nightly
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Time: 2020-03-21T09:05:26 CETType: NightlyOS Name: LinuxOS Platform: x86_64OS Release: 3.13.0-153-genericOS Version: #203-Ubuntu SMP Thu Jun 14 08:52:28 UTC 2018Compiler Version: unknownCTest version: ctest-2.8.12.2History
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Stage: Update (0 errors, 0 warnings)
Start Time: 2020-03-21T09:05:23 CETEnd Time: 2020-03-21T09:05:25 CETUpdate Command: "/usr/bin/git" "fetch"Update Type: GITNumber of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2020-03-21T09:05:25 CETEnd Time: 2020-03-21T09:05:25 CETConfigure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_Fortran_COMPILER=gfortran -DUNRES_MD_FF=E0LL2Y -DUNRES_DFA=0 -DUNRES_CSA_FF=E0LL2Y -DUNRES_WITH_MPI=1 "-GUnix Makefiles" "/tmp/cdash/devel/source"Configure Return Value: 0Configure Output: -- The Fortran compiler identification is GNU
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/devel/build
View Configure Summary
Build (0 errors, 27 warnings)
Build command: /usr/bin/make -i -j4 Start Time: 2020-03-21T09:05:26 CETEnd Time: 2020-03-21T09:05:50 CETView Errors Summary
Build Warnings (27)
[ 58%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/mcm.F.o
[ 59%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/ssMD.F.o
[ 59%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/MD_A-MTS.F.o
[ 60%] [ 60%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/minimize_p.F.o
Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/timing.F.o
/.../source/source/unres/src_MD-M-SAXS-homology/minimize_p.F:424.28:
common /przechowalnia/ v
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (207850216 vs 46080000 bytes)
[ 60%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/track.F.o
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[ 62%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/iperm.f.o
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[ 53%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/parmread.F.o
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[ 56%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/rescode.f.o
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[ 58%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/srtclust.f.o Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
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COMMON.LANGEVIN.lang0:6.23:
Included at /.../source/source/unres/src_MD-M-SAXS-homology/lagrangian_lesyng.F:629:
common /langforc/ friction,stochforc,
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/cluster/wham/src-M-SAXS-homology/readpdb.F:638.31:
call sccenter(ires,iii,sccor)
1
Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/printmat.f.o
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Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/kinetic_lesyng.f.o
/.../source/source/cluster/wham/src-M-SAXS-homology/readpdb.F:484.35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/cluster/wham/src-M-SAXS-homology/readpdb.F:506.43:
call sccenter(ires_old,iii,sccor)
1
[ 42%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/indexx.f.o
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/.../source/source/unres/src_MD-M-SAXS-homology/initialize_p.F:432.28:
common /przechowalnia/ iturn3_start_all(0:max_fg_procs),
1
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Linking Fortran executable ../../../bin/xdrf2pdb
[ 30%] Built target UNRES_XDRF2PDB_BIN-M
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180 format (I5,2F12.3,I2,$,8(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1)
/.../source/source/cluster/wham/src-M-SAXS-homology/geomout.F:174.29:
190 format (3X,11(1X,2I3,$))
1
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/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1326.29:
common /przechowalnia/ d_restart1,d_restart2
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (117964800 vs 59031552 bytes)
/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1723.28:
common /przechowalnia/ d_restart1
1
Warning: $ should be the last specifier in format at (1)
[ 11%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/hc.f.o
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[ 12%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/initialize.f.o
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[ 12%] [ 13%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/bond_move.f.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/main_clust.F.o
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/.../source/source/cluster/unres/src/geomout.F:166.37:
180 format (I5,F12.3,I2,8(1X,2I3,$))
1
Warning: $ should be the last specifier in format at (1)
/.../source/source/cluster/unres/src/geomout.F:167.29:
190 format (3X,11(1X,2I3,$))
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (58982400 vs 117964800 bytes)
/.../source/source/unres/src_MD-M-SAXS-homology/MREMD.F:1911.28:
common /przechowalnia/ d_restart1
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (58982400 vs 117964800 bytes)
[ 71%] Building Fortran object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/cinfo.f.o
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[ 73%] Building C object source/cluster/wham/src-M-SAXS-homology/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/proc_proc.c.o
[ 74%] Linking Fortran executable ../../../../bin/cluster_wham-mult_gfortran_MPI_E0LL2Y.exe
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/PMFprocess.F.o
[ 74%] Built target UNRES_CLUSTER_WHAM_M_BIN
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/.../source/source/wham/src-M-SAXS-homology/readpdb.F:485.35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/wham/src-M-SAXS-homology/readpdb.F:507.43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/wham/src-M-SAXS-homology/readpdb.F:639.31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
[ 76%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/fitsq.f.o
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Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/prng_32.F.o
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write(istat,'(1x,$,20(i3,$))')
1
Warning: $ should be the last specifier in format at (1)
/.../source/source/wham/src-M-SAXS-homology/conf_compar.F:381.25:
write(istat,'(1x,$,20(f5.1,f5.2$))')
1
Warning: $ should be the last specifier in format at (1)
/.../source/source/wham/src-M-SAXS-homology/conf_compar.F:384.25:
write(istat,'(1x,$,20(f5.1$))')
1
Warning: $ should be the last specifier in format at (1)
/.../source/source/wham/src-M-SAXS-homology/conf_compar.F:387.24:
write(istat,'(1x,$,20(i1,$))')
1
Warning: $ should be the last specifier in format at (1)
/.../source/source/wham/src-M-SAXS-homology/conf_compar.F:393.27:
write (istat,'(100(i1,$))')(iclass(k,j),
1
Warning: $ should be the last specifier in format at (1)
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Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/qwolynes.f.o
[ 85%] [ 85%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/readpdb.F.o Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/readrtns_CSA.F.o
/.../source/source/unres/src_MD-M-SAXS-homology/readpdb.F:625.35:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/unres/src_MD-M-SAXS-homology/readpdb.F:647.43:
call sccenter(ires_old,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
/.../source/source/unres/src_MD-M-SAXS-homology/readpdb.F:780.31:
call sccenter(ires,iii,sccor)
1
Warning: Actual argument contains too few elements for dummy argument 'sccor' (60/150) at (1)
[ 85%] [ 85%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/read_ref_str.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/refsys.f.o
[ 85%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/rmscalc.F.o
[ 86%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/regularize.F.o
[ 87%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/secondary.f.o
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[ 88%] [ 89%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/rmdd.f.o
Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/define_pairs.f.o
[ 89%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/mysort.f.o Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sc_move.F.o
[ 90%] [ 91%] Building Fortran object source/wham/src-M-SAXS-homology/CMakeFiles/UNRES_WHAM_M_BIN.dir/ssMD.F.o
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[ 92%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/stochfric.F.o
/.../source/source/unres/src_MD-M-SAXS-homology/stochfric.F:349.28:
common /przechowalnia/ ginvfric,Ghalf,fcopy
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (115209600 vs 46080000 bytes)
/.../source/source/unres/src_MD-M-SAXS-homology/stochfric.F:346.20:
common /syfek/ gamvec
1
Warning: Named COMMON block 'syfek' at (1) shall be of the same size as elsewhere (19200 vs 57600 bytes)
[ 92%] Linking Fortran executable ../../../bin/wham-mult_gfortran_MPI_E0LL2Y.exe
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/sumsld.f.o
[ 92%] Built target UNRES_WHAM_M_BIN
[ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/surfatom.f.o
[ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/test.F.o
[ 93%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/thread.F.o
[ 94%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/timing.F.o
[ 94%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/together.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/unres.F.o
[ 95%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/ssMD.F.o Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/iperm.f.o
[ 98%] [ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/PMFprocess.F.o
[ 99%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new_barrier.F.o
[100%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o
Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/gradient_p.F.o
[100%] Building Fortran object source/unres/src_MD-M-SAXS-homology/CMakeFiles/UNRES_BIN-MD-M.dir/cinfo.f.o
/.../source/source/unres/src_MD-M-SAXS-homology/energy_p_new_barrier.F:9207.28:
common /przechowalnia/ zapas
1
Warning: Named COMMON block 'przechowalnia' at (1) shall be of the same size as elsewhere (172032000 vs 63897600 bytes)
Linking Fortran executable ../../../bin/unresMD-mult_gfortran_MPI_E0LL2Y.exe
[100%] Built target UNRES_BIN-MD-M
View Warnings Summary
Test (27 passed, 3 failed, 0 not run)
View Tests Summary