Site Name: dell15 Build Name: homology Linux-pgi-MPI E0LL2Y
(view notes)
Stamp: 20180220-2203-Nightly
(related builds)
Time: 2018-02-21T04:21:07 CET Type: Nightly
OS Name: Linux OS Platform: x86_64 OS Release: 3.13.0-24-generic OS Version: #47-Ubuntu SMP Fri May 2 23:30:00 UTC 2014 Compiler Version: unknown CTest version: ctest-2.8.12.2
Start Time: 2018-02-21T04:21:05 CET End Time: 2018-02-21T04:21:05 CET Update Command: "/usr/bin/git" "fetch" Update Type: GIT Number of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2018-02-21T04:21:05 CET End Time: 2018-02-21T04:21:05 CET Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DUNRES_MD_FF=E0LL2Y -DUNRES_WITH_MPI=1 -DUNRES_MPIRUN=1 -DCMAKE_Fortran_COMPILER=pgf90 "-GUnix Makefiles" "/tmp/cdash/homology/source" Configure Return Value: 0 Configure Output:
-- The Fortran compiler identification is PGI
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /opt/pgi/linux86-64/17.4/bin/pgf90
-- Check for working Fortran compiler: /opt/pgi/linux86-64/17.4/bin/pgf90 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/pgi/linux86-64/17.4/bin/pgf90 supports Fortran 90
-- Checking whether /opt/pgi/linux86-64/17.4/bin/pgf90 supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/homology/build
Build command: /usr/bin/make -i -j4 Start Time: 2018-02-21T04:21:07 CET End Time: 2018-02-21T04:22:19 CET
IPA: Recompiling CMakeFiles/UNRES_CLUSTER_WHAM_BIN.dir/convert.f.o: new IPA information
IPA: Recompiling CMakeFiles/UNRES_CLUSTER_WHAM_BIN.dir/energy_p_new.F.o: new IPA information
[ 86%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/permut.f.o
[ 86%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/pinorm.f.o
[ 86%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/printmat.f.o
[ 87%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/probabl.F.o
[ 87%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/read_coords.F.o
The following function(s) are called, but no IPA information is available:
initialize_, hpb_partition_, init_int_table_, homology_partition_, refsys_
Linking without IPA
/usr/bin/ld: cannot find CMakeFiles/UNRES_WHAM_M_BIN.dir/initialize_p.F.o: No such file or directory
child process exit status 1: /usr/bin/ld
IPA: Recompiling CMakeFiles/UNRES_BIN-MD-M.dir/energy_p_new-sep_barrier.F.o: new IPA information
[ 87%] Built target UNRES_WHAM_M_BIN
[ 87%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/readpdb.f.o
Scanning dependencies of target UNRES_CLUSTER_BIN
PGF90-W-0103-Type conversion of subscript expression for cref (/.../source/source/cluster/wham/src-M/readpdb.f: 200)
PGF90-W-0103-Type conversion of subscript expression for cref (/.../source/source/cluster/wham/src-M/readpdb.f: 201)
PGF90-W-0103-Type conversion of subscript expression for chain_rep (/.../source/source/cluster/wham/src-M/readpdb.f: 209)
PGF90-W-0103-Type conversion of subscript expression for chain_rep (/.../source/source/cluster/wham/src-M/readpdb.f: 210)
[ 87%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/arcos.f.o
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