Site Name: dell15 Build Name: homology Linux-pgi-MPI E0LL2Y
(view notes)
Stamp: 20180206-2203-Nightly
(related builds)
Time: 2018-02-07T04:23:26 CET Type: Nightly
OS Name: Linux OS Platform: x86_64 OS Release: 3.13.0-24-generic OS Version: #47-Ubuntu SMP Fri May 2 23:30:00 UTC 2014 Compiler Version: unknown CTest version: ctest-2.8.12.2
Start Time: 2018-02-07T04:23:24 CET End Time: 2018-02-07T04:23:25 CET Update Command: "/usr/bin/git" "fetch" Update Type: GIT Number of Updates: 0
Configure (0 errors, 0 warnings)
Start Time: 2018-02-07T04:23:25 CET End Time: 2018-02-07T04:23:25 CET Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DUNRES_MD_FF=E0LL2Y -DUNRES_WITH_MPI=1 -DUNRES_MPIRUN=1 -DCMAKE_Fortran_COMPILER=pgf90 "-GUnix Makefiles" "/tmp/cdash/homology/source" Configure Return Value: 0 Configure Output:
-- The Fortran compiler identification is PGI
-- The C compiler identification is GNU 4.8.4
-- Check for working Fortran compiler: /opt/pgi/linux86-64/17.4/bin/pgf90
-- Check for working Fortran compiler: /opt/pgi/linux86-64/17.4/bin/pgf90 -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/pgi/linux86-64/17.4/bin/pgf90 supports Fortran 90
-- Checking whether /opt/pgi/linux86-64/17.4/bin/pgf90 supports Fortran 90 -- yes
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
MPI found
Detected 64-bit architecture
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/cdash/homology/build
Build command: /usr/bin/make -i -j4 Start Time: 2018-02-07T04:23:26 CET End Time: 2018-02-07T04:24:38 CET
[ 84%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/hc.f.o
[ 84%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/icant.f.o
[ 84%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/initialize_p.F.o
[ 85%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/intcor.f.o
[ 85%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/int_from_cart1.f.o
IPA: Recompiling CMakeFiles/UNRES_BIN-MD-M.dir/thread.F.o: new IPA information
[ 85%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/main_clust.F.o
The following function(s) are called, but no IPA information is available:
initialize_, hpb_partition_, init_int_table_, homology_partition_, refsys_
Linking without IPA
/usr/bin/ld: cannot find CMakeFiles/UNRES_WHAM_M_BIN.dir/initialize_p.F.o: No such file or directory
child process exit status 1: /usr/bin/ld
[ 85%] Built target UNRES_WHAM_M_BIN
[ 85%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/matmult.f.o
IPA: Recompiling CMakeFiles/UNRES_BIN-MD-M.dir/timing.F.o: new IPA information
Scanning dependencies of target UNRES_CLUSTER_BIN
[ 85%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/arcos.f.o
IPA: Recompiling CMakeFiles/UNRES_BIN-MD-M.dir/together.F.o: new IPA information
[ 85%] [ 85%] Building Fortran object source/cluster/wham/src-M/CMakeFiles/UNRES_CLUSTER_WHAM_M_BIN.dir/misc.f.o
Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/cartprint.f.o
[ 86%] Building Fortran object source/cluster/unres/src/CMakeFiles/UNRES_CLUSTER_BIN.dir/chainbuild.f.o
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