From 94ad5ffafd322d8c99ac9204c10efa01746ea973 Mon Sep 17 00:00:00 2001 From: Cezary Czaplewski Date: Sat, 23 Jun 2018 00:14:43 +0200 Subject: [PATCH] cluster_wham Adam's new constr_dist single chain --- source/cluster/wham/src/energy_p_new.F | 136 +++++----- .../cluster/wham/src/include_unres/COMMON.SBRIDGE | 19 +- source/cluster/wham/src/readrtns.F | 268 ++++++++++++++------ 3 files changed, 260 insertions(+), 163 deletions(-) diff --git a/source/cluster/wham/src/energy_p_new.F b/source/cluster/wham/src/energy_p_new.F index 8006a41..a56af26 100644 --- a/source/cluster/wham/src/energy_p_new.F +++ b/source/cluster/wham/src/energy_p_new.F @@ -2875,12 +2875,15 @@ C include 'COMMON.DERIV' include 'COMMON.VAR' include 'COMMON.INTERACT' - include 'COMMON.IOUNITS' include 'COMMON.CONTROL' + include 'COMMON.IOUNITS' dimension ggg(3) ehpb=0.0D0 + ggg=0.0d0 +C write (iout,*) ,"link_end",link_end,constr_dist cd write(iout,*)'edis: nhpb=',nhpb,' fbr=',fbr -cd write(iout,*)'link_start=',link_start,' link_end=',link_end +c write(iout,*)'link_start=',link_start,' link_end=',link_end, +c & " constr_dist",constr_dist if (link_end.eq.0) return do i=link_start,link_end C If ihpb(i) and jhpb(i) > NRES, this is a SC-SC distance, otherwise a @@ -2899,101 +2902,81 @@ c write (iout,*) "i",i," ii",ii," iii",iii," jj",jj," jjj",jjj, c & dhpb(i),dhpb1(i),forcon(i) C 24/11/03 AL: SS bridges handled separately because of introducing a specific C distance and angle dependent SS bond potential. +C if (ii.gt.nres .and. iabs(itype(iii)).eq.1 .and. +C & iabs(itype(jjj)).eq.1) then +cmc if (ii.gt.nres .and. itype(iii).eq.1 .and. itype(jjj).eq.1) then +C 18/07/06 MC: Use the convention that the first nss pairs are SS bonds if (.not.dyn_ss .and. i.le.nss) then C 15/02/13 CC dynamic SSbond - additional check - if (ii.gt.nres .and. itype(iii).eq.1 .and. itype(jjj).eq.1) then - call ssbond_ene(iii,jjj,eij) - ehpb=ehpb+2*eij + if (ii.gt.nres .and. iabs(itype(iii)).eq.1 .and. + & iabs(itype(jjj)).eq.1) then + call ssbond_ene(iii,jjj,eij) + ehpb=ehpb+2*eij + endif cd write (iout,*) "eij",eij - endif - else if (ii.gt.nres .and. jj.gt.nres) then -c Restraints from contact prediction - dd=dist(ii,jj) - if (constr_dist.eq.11) then - ehpb=ehpb+fordepth(i)**4.0d0 - & *rlornmr1(dd,dhpb(i),dhpb1(i),forcon(i)) - fac=fordepth(i)**4.0d0 - & *rlornmr1prim(dd,dhpb(i),dhpb1(i),forcon(i))/dd - else - if (dhpb1(i).gt.0.0d0) then - ehpb=ehpb+2*forcon(i)*gnmr1(dd,dhpb(i),dhpb1(i)) - fac=forcon(i)*gnmr1prim(dd,dhpb(i),dhpb1(i))/dd -c write (iout,*) "beta nmr", -c & dd,2*forcon(i)*gnmr1(dd,dhpb(i),dhpb1(i)) - else - dd=dist(ii,jj) - rdis=dd-dhpb(i) -C Get the force constant corresponding to this distance. - waga=forcon(i) -C Calculate the contribution to energy. - ehpb=ehpb+waga*rdis*rdis -c write (iout,*) "beta reg",dd,waga*rdis*rdis -C -C Evaluate gradient. -C - fac=waga*rdis/dd - endif !end dhpb1(i).gt.0 - endif !end const_dist=11 - do j=1,3 - ggg(j)=fac*(c(j,jj)-c(j,ii)) - enddo - do j=1,3 - ghpbx(j,iii)=ghpbx(j,iii)-ggg(j) - ghpbx(j,jjj)=ghpbx(j,jjj)+ggg(j) - enddo - do k=1,3 - ghpbc(k,jjj)=ghpbc(k,jjj)+ggg(k) - ghpbc(k,iii)=ghpbc(k,iii)-ggg(k) - enddo - else +cd & ' waga=',waga,' fac=',fac +! else if (ii.gt.nres .and. jj.gt.nres) then + else C Calculate the distance between the two points and its difference from the C target distance. dd=dist(ii,jj) -C write(iout,*) "after",dd - if (constr_dist.eq.11) then - ehpb=ehpb+fordepth(i)**4.0d0 - & *rlornmr1(dd,dhpb(i),dhpb1(i),forcon(i)) - fac=fordepth(i)**4.0d0 - & *rlornmr1prim(dd,dhpb(i),dhpb1(i),forcon(i))/dd -C ehpb=ehpb+fordepth(i)**4*rlornmr1(dd,dhpb(i),dhpb1(i)) -C fac=fordepth(i)**4*rlornmr1prim(dd,dhpb(i),dhpb1(i))/dd -C print *,ehpb,"tu?" -C write(iout,*) ehpb,"btu?", -C & dd,dhpb(i),dhpb1(i),fordepth(i),forcon(i) -C write (iout,'(a6,2i5,3f8.3)') "edisl",ii,jj, -C & ehpb,fordepth(i),dd - else - if (dhpb1(i).gt.0.0d0) then - ehpb=ehpb+2*forcon(i)*gnmr1(dd,dhpb(i),dhpb1(i)) + if (irestr_type(i).eq.11) then + ehpb=ehpb+fordepth(i)!**4.0d0 + & *rlornmr1(dd,dhpb(i),dhpb1(i),forcon(i)) + fac=fordepth(i)!**4.0d0 + & *rlornmr1prim(dd,dhpb(i),dhpb1(i),forcon(i))/dd +c if (energy_dec) write (iout,'(a6,2i5,6f10.3,i5)') +c & "edisL",ii,jj,dd,dhpb(i),dhpb1(i),forcon(i),fordepth(i), +c & ehpb,irestr_type(i) + else if (irestr_type(i).eq.10) then +c AL 6//19/2018 cross-link restraints + xdis = 0.5d0*(dd/forcon(i))**2 + expdis = dexp(-xdis) +c aux=(dhpb(i)+dhpb1(i)*xdis)*expdis+fordepth(i) + aux=(dhpb(i)+dhpb1(i)*xdis*xdis)*expdis+fordepth(i) +c write (iout,*)"HERE: xdis",xdis," expdis",expdis," aux",aux, +c & " wboltzd",wboltzd + ehpb=ehpb-wboltzd*xlscore(i)*dlog(aux) +c fac=-wboltzd*(dhpb1(i)*(1.0d0-xdis)-dhpb(i)) + fac=-wboltzd*xlscore(i)*(dhpb1(i)*(2.0d0-xdis)*xdis-dhpb(i)) + & *expdis/(aux*forcon(i)**2) +c if (energy_dec) write(iout,'(a6,2i5,6f10.3,i5)') +c & "edisX",ii,jj,dd,dhpb(i),dhpb1(i),forcon(i),fordepth(i), +c & -wboltzd*xlscore(i)*dlog(aux),irestr_type(i) + else if (irestr_type(i).eq.2) then +c Quartic restraints + ehpb=ehpb+forcon(i)*gnmr1(dd,dhpb(i),dhpb1(i)) +c if (energy_dec) write(iout,'(a6,2i5,5f10.3,i5)') +c & "edisQ",ii,jj,dd,dhpb(i),dhpb1(i),forcon(i), +c & forcon(i)*gnmr1(dd,dhpb(i),dhpb1(i)),irestr_type(i) fac=forcon(i)*gnmr1prim(dd,dhpb(i),dhpb1(i))/dd -c write (iout,*) "alph nmr", -c & dd,2*forcon(i)*gnmr1(dd,dhpb(i),dhpb1(i)) else +c Quadratic restraints rdis=dd-dhpb(i) C Get the force constant corresponding to this distance. waga=forcon(i) C Calculate the contribution to energy. - ehpb=ehpb+waga*rdis*rdis -c write (iout,*) "alpha reg",dd,waga*rdis*rdis + ehpb=ehpb+0.5d0*waga*rdis*rdis +c if (energy_dec) write(iout,'(a6,2i5,5f10.3,i5)') +c & "edisS",ii,jj,dd,dhpb(i),dhpb1(i),forcon(i), +c & 0.5d0*waga*rdis*rdis,irestr_type(i) C C Evaluate gradient. C fac=waga*rdis/dd endif - endif -cd print *,'i=',i,' ii=',ii,' jj=',jj,' dhpb=',dhpb(i),' dd=',dd, -cd & ' waga=',waga,' fac=',fac - do j=1,3 - ggg(j)=fac*(c(j,jj)-c(j,ii)) - enddo +c Calculate Cartesian gradient + do j=1,3 + ggg(j)=fac*(c(j,jj)-c(j,ii)) + enddo cd print '(i3,3(1pe14.5))',i,(ggg(j),j=1,3) C If this is a SC-SC distance, we need to calculate the contributions to the C Cartesian gradient in the SC vectors (ghpbx). if (iii.lt.ii) then - do j=1,3 - ghpbx(j,iii)=ghpbx(j,iii)-ggg(j) - ghpbx(j,jjj)=ghpbx(j,jjj)+ggg(j) - enddo + do j=1,3 + ghpbx(j,iii)=ghpbx(j,iii)-ggg(j) + ghpbx(j,jjj)=ghpbx(j,jjj)+ggg(j) + enddo endif do k=1,3 ghpbc(k,jjj)=ghpbc(k,jjj)+ggg(k) @@ -3001,7 +2984,6 @@ C Cartesian gradient in the SC vectors (ghpbx). enddo endif enddo - if (constr_dist.ne.11) ehpb=0.5D0*ehpb return end C-------------------------------------------------------------------------- diff --git a/source/cluster/wham/src/include_unres/COMMON.SBRIDGE b/source/cluster/wham/src/include_unres/COMMON.SBRIDGE index b68d0e3..d02241d 100644 --- a/source/cluster/wham/src/include_unres/COMMON.SBRIDGE +++ b/source/cluster/wham/src/include_unres/COMMON.SBRIDGE @@ -2,17 +2,20 @@ integer ns,nss,nfree,iss common /sbridge/ ss_depth,ebr,d0cm,akcm,akth,akct,v1ss,v2ss,v3ss, & ns,nss,nfree,iss(maxss) - double precision dhpb,dhpb1,forcon,fordepth - integer ihpb,jhpb,nhpb,idssb,jdssb,ibecarb + double precision dhpb,dhpb1,forcon,fordepth,xlscore,wboltzd + integer ihpb,jhpb,nhpb,idssb,jdssb,ibecarb,irestr_type common /links/ dhpb(maxdim),dhpb1(maxdim),forcon(maxdim), - & fordepth(maxdim), - & ihpb(maxdim),jhpb(maxdim),ibecarb(maxdim),nhpb + & fordepth(maxdim),xlscore(maxdim),wboltzd, + & ihpb(maxdim),jhpb(maxdim),ibecarb(maxdim),irestr_type(maxdim), + & nhpb double precision weidis common /restraints/ weidis integer link_start,link_end common /links_split/ link_start,link_end - double precision Ht,dyn_ssbond_ij + double precision Ht,dyn_ssbond_ij,dtriss,atriss,btriss,ctriss logical dyn_ss,dyn_ss_mask - common /dyn_ssbond/ dyn_ssbond_ij(maxres,maxres), - & idssb(maxdim),jdssb(maxdim), - & Ht,dyn_ss,dyn_ss_mask(maxres) + common /dyn_ssbond/ dtriss,atriss,btriss,ctriss,Ht, + & dyn_ssbond_ij(maxres,maxres), + & idssb(maxdim),jdssb(maxdim) + common /dyn_ss_logic/ + & dyn_ss,dyn_ss_mask(maxres) diff --git a/source/cluster/wham/src/readrtns.F b/source/cluster/wham/src/readrtns.F index 47ff41d..9a98fe1 100644 --- a/source/cluster/wham/src/readrtns.F +++ b/source/cluster/wham/src/readrtns.F @@ -769,6 +769,9 @@ c------------------------------------------------------------------------------- subroutine read_dist_constr implicit real*8 (a-h,o-z) include 'DIMENSIONS' +#ifdef MPI + include 'mpif.h' +#endif include 'COMMON.CONTROL' include 'COMMON.CHAIN' include 'COMMON.IOUNITS' @@ -776,90 +779,101 @@ c------------------------------------------------------------------------------- integer ifrag_(2,100),ipair_(2,100) double precision wfrag_(100),wpair_(100) character*500 controlcard -c write (iout,*) "Calling read_dist_constr" + logical lprn /.true./ + logical normalize,next + integer restr_type + double precision xlink(4,0:4) / +c a b c sigma + & 0.0d0,0.0d0,0.0d0,0.0d0, ! default, no xlink potential + & 0.00305218d0,9.46638d0,4.68901d0,4.74347d0, ! ZL + & 0.00214928d0,12.7517d0,0.00375009d0,6.13477d0, ! ADH + & 0.00184547d0,11.2678d0,0.00140292d0,7.00868d0, ! PDH + & 0.000161786d0,6.29273d0,4.40993d0,7.13956d0 / ! DSS + write (iout,*) "Calling read_dist_constr" c write (iout,*) "nres",nres," nstart_sup",nstart_sup," nsup",nsup - call card_concat(controlcard) c call flush(iout) -c write (iout,'(a)') controlcard + next=.true. + + DO WHILE (next) + + call card_concat(controlcard) + next = index(controlcard,"NEXT").gt.0 + call readi(controlcard,"RESTR_TYPE",restr_type,constr_dist) + write (iout,*) "restr_type",restr_type + call readi(controlcard,"NFRAG",nfrag_,0) call readi(controlcard,"NFRAG",nfrag_,0) call readi(controlcard,"NPAIR",npair_,0) call readi(controlcard,"NDIST",ndist_,0) call reada(controlcard,'DIST_CUT',dist_cut,5.0d0) + if (restr_type.eq.10) + & call reada(controlcard,'WBOLTZD',wboltzd,0.591d0) call multreadi(controlcard,"IFRAG",ifrag_(1,1),2*nfrag_,0) call multreadi(controlcard,"IPAIR",ipair_(1,1),2*npair_,0) call multreada(controlcard,"WFRAG",wfrag_(1),nfrag_,0.0d0) call multreada(controlcard,"WPAIR",wpair_(1),npair_,0.0d0) - write (iout,*) "NFRAG",nfrag_," NPAIR",npair_," NDIST",ndist_ - write (iout,*) "IFRAG" - do i=1,nfrag_ - write (iout,*) i,ifrag_(1,i),ifrag_(2,i),wfrag_(i) - enddo - write (iout,*) "IPAIR" - do i=1,npair_ - write (iout,*) i,ipair_(1,i),ipair_(2,i),wpair_(i) - enddo -#ifdef AIX - call flush_(iout) -#else - call flush(iout) -#endif - if (.not.refstr .and. nfrag_.gt.0) then + normalize = index(controlcard,"NORMALIZE").gt.0 + write (iout,*) "WBOLTZD",wboltzd +c write (iout,*) "NFRAG",nfrag_," NPAIR",npair_," NDIST",ndist_ +c write (iout,*) "IFRAG" +c do i=1,nfrag_ +c write (iout,*) i,ifrag_(1,i),ifrag_(2,i),wfrag_(i) +c enddo +c write (iout,*) "IPAIR" +c do i=1,npair_ +c write (iout,*) i,ipair_(1,i),ipair_(2,i),wpair_(i) +c enddo + if (nfrag_.gt.0) then + nres0=nres + read(inp,'(a)') pdbfile write (iout,*) - & "ERROR: no reference structure to compute distance restraints" - write (iout,*) - & "Restraints must be specified explicitly (NDIST=number)" - stop + & "Distance restraints will be constructed from structure ",pdbfile + open(ipdbin,file=pdbfile,status='old',err=11) + call readpdb(.true.) + nres=nres0 + close(ipdbin) endif - if (nfrag_.lt.2 .and. npair_.gt.0) then - write (iout,*) "ERROR: Less than 2 fragments specified", - & " but distance restraints between pairs requested" - stop - endif -#ifdef AIX - call flush_(iout) -#else - call flush(iout) -#endif do i=1,nfrag_ if (ifrag_(1,i).lt.nstart_sup) ifrag_(1,i)=nstart_sup if (ifrag_(2,i).gt.nstart_sup+nsup-1) & ifrag_(2,i)=nstart_sup+nsup-1 c write (iout,*) i,ifrag_(1,i),ifrag_(2,i),wfrag_(i) c call flush(iout) - if (wfrag_(i).gt.0.0d0) then + if (wfrag_(i).eq.0.0d0) cycle do j=ifrag_(1,i),ifrag_(2,i)-1 do k=j+1,ifrag_(2,i) - write (iout,*) "j",j," k",k +c write (iout,*) "j",j," k",k ddjk=dist(j,k) - if (constr_dist.eq.1) then - nhpb=nhpb+1 - ihpb(nhpb)=j - jhpb(nhpb)=k + if (restr_type.eq.1) then + nhpb=nhpb+1 + irestr_type(nhpb)=1 + ihpb(nhpb)=j + jhpb(nhpb)=k dhpb(nhpb)=ddjk - forcon(nhpb)=wfrag_(i) + forcon(nhpb)=wfrag_(i) else if (constr_dist.eq.2) then if (ddjk.le.dist_cut) then nhpb=nhpb+1 + irestr_type(nhpb)=1 ihpb(nhpb)=j jhpb(nhpb)=k dhpb(nhpb)=ddjk forcon(nhpb)=wfrag_(i) endif - else + else if (restr_type.eq.3) then nhpb=nhpb+1 + irestr_type(nhpb)=1 ihpb(nhpb)=j jhpb(nhpb)=k dhpb(nhpb)=ddjk forcon(nhpb)=wfrag_(i)*dexp(-0.5d0*(ddjk/dist_cut)**2) endif - write (iout,'(a,3i5,f8.2,1pe12.2)') "+dist.constr ", + write (iout,'(a,3i5,f8.2,1pe12.2)') "+dist.restr ", & nhpb,ihpb(nhpb),jhpb(nhpb),dhpb(nhpb),forcon(nhpb) enddo enddo - endif enddo do i=1,npair_ - if (wpair_(i).gt.0.0d0) then + if (wpair_(i).eq.0.0d0) cycle ii = ipair_(1,i) jj = ipair_(2,i) if (ii.gt.jj) then @@ -869,54 +883,152 @@ c call flush(iout) endif do j=ifrag_(1,ii),ifrag_(2,ii) do k=ifrag_(1,jj),ifrag_(2,jj) - nhpb=nhpb+1 - ihpb(nhpb)=j - jhpb(nhpb)=k - forcon(nhpb)=wpair_(i) - dhpb(nhpb)=dist(j,k) - write (iout,'(a,3i5,f8.2,f10.1)') "+dist.constr ", + if (restr_type.eq.1) then + nhpb=nhpb+1 + irestr_type(nhpb)=1 + ihpb(nhpb)=j + jhpb(nhpb)=k + dhpb(nhpb)=ddjk + forcon(nhpb)=wfrag_(i) + else if (constr_dist.eq.2) then + if (ddjk.le.dist_cut) then + nhpb=nhpb+1 + irestr_type(nhpb)=1 + ihpb(nhpb)=j + jhpb(nhpb)=k + dhpb(nhpb)=ddjk + forcon(nhpb)=wfrag_(i) + endif + else if (restr_type.eq.3) then + nhpb=nhpb+1 + irestr_type(nhpb)=1 + ihpb(nhpb)=j + jhpb(nhpb)=k + dhpb(nhpb)=ddjk + forcon(nhpb)=wfrag_(i)*dexp(-0.5d0*(ddjk/dist_cut)**2) + endif + write (iout,'(a,3i5,f8.2,f10.1)') "+dist.restr ", & nhpb,ihpb(nhpb),jhpb(nhpb),dhpb(nhpb),forcon(nhpb) enddo enddo - endif enddo + +c print *,ndist_ + write (iout,*) "Distance restraints as read from input" do i=1,ndist_ - if (constr_dist.eq.11) then - read (inp,*) ihpb(nhpb+1),jhpb(nhpb+1),dhpb(i),dhpb1(i), - & ibecarb(i),forcon(nhpb+1),fordepth(nhpb+1) - fordepth(nhpb+1)=fordepth(nhpb+1)/forcon(nhpb+1) - else - read (inp,*) ihpb(nhpb+1),jhpb(nhpb+1),dhpb(i),dhpb1(i), - & ibecarb(i),forcon(nhpb+1) - endif - if (forcon(nhpb+1).gt.0.0d0) then + if (restr_type.eq.11) then + read (inp,*) ihpb(nhpb+1),jhpb(nhpb+1),dhpb(nhpb+1), + & dhpb1(nhpb+1),ibecarb(i),forcon(nhpb+1),fordepth(nhpb+1) +c fordepth(nhpb+1)=fordepth(nhpb+1)/forcon(nhpb+1) + if (forcon(nhpb+1).le.0.0d0.or.fordepth(nhpb+1).le.0.0d0)cycle nhpb=nhpb+1 - if (ibecarb(i).gt.0) then - ihpb(i)=ihpb(i)+nres - jhpb(i)=jhpb(i)+nres + irestr_type(nhpb)=11 + write (iout,'(a,4i5,2f8.2,2f10.5,i5)') "+dist.restr ", + & nhpb,ihpb(nhpb),jhpb(nhpb),ibecarb(nhpb),dhpb(nhpb), + & dhpb1(nhpb),forcon(nhpb),fordepth(nhpb),irestr_type(nhpb) + if (ibecarb(nhpb).gt.0) then + ihpb(nhpb)=ihpb(nhpb)+nres + jhpb(nhpb)=jhpb(nhpb)+nres endif - if (dhpb(nhpb).eq.0.0d0) + else if (constr_dist.eq.10) then +c Cross-lonk Markov-like potential + call card_concat(controlcard) + call readi(controlcard,"ILINK",ihpb(nhpb+1),0) + call readi(controlcard,"JLINK",jhpb(nhpb+1),0) + ibecarb(nhpb+1)=0 + if (index(controlcard,"BETA").gt.0) ibecarb(nhpb+1)=1 + if (ihpb(nhpb+1).eq.0 .or. jhpb(nhpb+1).eq.0) cycle + if (index(controlcard,"ZL").gt.0) then + link_type=1 + else if (index(controlcard,"ADH").gt.0) then + link_type=2 + else if (index(controlcard,"PDH").gt.0) then + link_type=3 + else if (index(controlcard,"DSS").gt.0) then + link_type=4 + else + link_type=0 + endif + call reada(controlcard,"AXLINK",dhpb(nhpb+1), + & xlink(1,link_type)) + call reada(controlcard,"BXLINK",dhpb1(nhpb+1), + & xlink(2,link_type)) + call reada(controlcard,"CXLINK",fordepth(nhpb+1), + & xlink(3,link_type)) + call reada(controlcard,"SIGMA",forcon(nhpb+1), + & xlink(4,link_type)) + call reada(controlcard,"SCORE",xlscore(nhpb+1),1.0d0) +c read (inp,*) ihpb(nhpb+1),jhpb(nhpb+1),ibecarb(nhpb+1), +c & dhpb(nhpb+1),dhpb1(nhpb+1),forcon(nhpb+1),fordepth(nhpb+1) + if (forcon(nhpb+1).le.0.0d0 .or. + & (dhpb(nhpb+1).eq.0 .and. dhpb1(nhpb+1).eq.0)) cycle + nhpb=nhpb+1 + irestr_type(nhpb)=10 + if (ibecarb(nhpb).gt.0) then + ihpb(nhpb)=ihpb(nhpb)+nres + jhpb(nhpb)=jhpb(nhpb)+nres + endif + write (iout,'(a,4i5,2f8.2,3f10.5,i5)') "+dist.restr ", + & nhpb,ihpb(nhpb),jhpb(nhpb),ibecarb(nhpb),dhpb(nhpb), + & dhpb1(nhpb),forcon(nhpb),fordepth(nhpb),xlscore(nhpb), + & irestr_type(nhpb) + else +C print *,"in else" + read (inp,*) ihpb(nhpb+1),jhpb(nhpb+1),dhpb(nhpb+1), + & dhpb1(nhpb+1),ibecarb(nhpb+1),forcon(nhpb+1) + if (forcon(nhpb+1).gt.0.0d0) then + nhpb=nhpb+1 + if (dhpb1(nhpb).eq.0.0d0) then + irestr_type(nhpb)=1 + else + irestr_type(nhpb)=2 + endif + if (ibecarb(nhpb).gt.0) then + ihpb(nhpb)=ihpb(nhpb)+nres + jhpb(nhpb)=jhpb(nhpb)+nres + endif + if (dhpb(nhpb).eq.0.0d0) & dhpb(nhpb)=dist(ihpb(nhpb),jhpb(nhpb)) endif + write (iout,'(a,4i5,f8.2,f10.1)') "+dist.restr ", + & nhpb,ihpb(nhpb),jhpb(nhpb),ibecarb(i),dhpb(nhpb),forcon(nhpb) + endif +C read (inp,*) ihpb(nhpb+1),jhpb(nhpb+1),forcon(nhpb+1) +C if (forcon(nhpb+1).gt.0.0d0) then +C nhpb=nhpb+1 +C dhpb(nhpb)=dist(ihpb(nhpb),jhpb(nhpb)) enddo - do i=1,nhpb - if (constr_dist.eq.11) then - write (iout,'(a,3i5,2f8.2,i2,2f10.1)') "+dist.constr11 ", - & i,ihpb(i),jhpb(i),dhpb(i),dhpb1(i),ibecarb(i),forcon(i), - & fordepth(i) - else - write (iout,'(a,3i5,2f8.2,i2,f10.1)') "+dist.constr ", - & i,ihpb(i),jhpb(i),dhpb(i),dhpb1(i),ibecarb(i),forcon(i) - endif - enddo -#ifdef AIX - call flush_(iout) -#else + + ENDDO ! next + + fordepthmax=0.0d0 + if (normalize) then + do i=nss+1,nhpb + if (irestr_type(i).eq.11.and.fordepth(i).gt.fordepthmax) + & fordepthmax=fordepth(i) + enddo + do i=nss+1,nhpb + if (irestr_type(i).eq.11) fordepth(i)=fordepth(i)/fordepthmax + enddo + endif + if (nhpb.gt.nss) then + write (iout,'(/a,i5,a/4a5,2a8,3a10,a5)') + & "The following",nhpb-nss, + & " distance restraints have been imposed:", + & " Nr"," res1"," res2"," beta"," d1"," d2"," k"," V", + & " score"," type" + do i=nss+1,nhpb + write (iout,'(4i5,2f8.2,3f10.5,i5)')i-nss,ihpb(i),jhpb(i), + & ibecarb(i),dhpb(i),dhpb1(i),forcon(i),fordepth(i),xlscore(i), + & irestr_type(i) + enddo + endif + call hpb_partition call flush(iout) -#endif return + 11 write (iout,*)"read_dist_restr: error reading reference structure" + stop end - c====------------------------------------------------------------------- subroutine read_constr_homology(lprn) -- 1.7.9.5