X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?p=unres.git;a=blobdiff_plain;f=source%2Fcluster%2Fwham%2Fsrc%2Fenergy_p_new.F;fp=source%2Fcluster%2Fwham%2Fsrc%2Fenergy_p_new.F;h=636f9830c176dd5bd671053d242d3f70f7aeedf1;hp=fd308201509c2cfda60cc29137c8652f3fef4e72;hb=2a226bfc86eabc6e4eae0c3ad1cbc3cb5417a05a;hpb=a0e685f844163003749ba91dfbf4644bcc8cfa30

diff --git a/source/cluster/wham/src/energy_p_new.F b/source/cluster/wham/src/energy_p_new.F
index fd30820..636f983 100644
--- a/source/cluster/wham/src/energy_p_new.F
+++ b/source/cluster/wham/src/energy_p_new.F
@@ -107,7 +107,7 @@ C
 #ifdef SPLITELE
       etot=wsc*evdw+wscp*evdw2+welec*fact(1)*ees+wvdwpp*evdw1
      & +wang*ebe+wtor*fact(1)*etors+wscloc*escloc
-     & +wstrain*ehpb+nss*ebr+wcorr*fact(3)*ecorr+wcorr5*fact(4)*ecorr5
+     & +wstrain*ehpb+wcorr*fact(3)*ecorr+wcorr5*fact(4)*ecorr5
      & +wcorr6*fact(5)*ecorr6+wturn4*fact(3)*eello_turn4
      & +wturn3*fact(2)*eello_turn3+wturn6*fact(5)*eturn6
      & +wel_loc*fact(2)*eel_loc+edihcnstr+wtor_d*fact(2)*etors_d
@@ -115,7 +115,7 @@ C
 #else
       etot=wsc*evdw+wscp*evdw2+welec*fact(1)*(ees+evdw1)
      & +wang*ebe+wtor*fact(1)*etors+wscloc*escloc
-     & +wstrain*ehpb+nss*ebr+wcorr*fact(3)*ecorr+wcorr5*fact(4)*ecorr5
+     & +wstrain*ehpb+wcorr*fact(3)*ecorr+wcorr5*fact(4)*ecorr5
      & +wcorr6*fact(5)*ecorr6+wturn4*fact(3)*eello_turn4
      & +wturn3*fact(2)*eello_turn3+wturn6*fact(5)*eturn6
      & +wel_loc*fact(2)*eel_loc+edihcnstr+wtor_d*fact(2)*etors_d
@@ -152,6 +152,7 @@ C
       energia(18)=estr
       energia(19)=esccor
       energia(20)=edihcnstr
+cc      if (dyn_ss) call dyn_set_nss
 c detecting NaNQ
       i=0
 #ifdef WINPGI
@@ -723,6 +724,7 @@ c      include "DIMENSIONS.COMPAR"
       include 'COMMON.INTERACT'
       include 'COMMON.IOUNITS'
       include 'COMMON.CALC'
+      include 'COMMON.SBRIDGE'
       logical lprn
       common /srutu/icall
       integer icant
@@ -748,6 +750,12 @@ C Calculate SC interaction energy.
 C
         do iint=1,nint_gr(i)
           do j=istart(i,iint),iend(i,iint)
+            IF (dyn_ss_mask(i).and.dyn_ss_mask(j)) THEN
+              call dyn_ssbond_ene(i,j,evdwij)
+              evdw=evdw+evdwij
+c              if (energy_dec) write (iout,'(a6,2i5,0pf7.3,a3)')
+c     &                        'evdw',i,j,evdwij,' ss'
+            ELSE
             ind=ind+1
             itypj=itype(j)
             dscj_inv=vbld_inv(j+nres)
@@ -830,6 +838,7 @@ C Calculate the radial part of the gradient
 C Calculate angular part of the gradient.
             call sc_grad
             endif
+            ENDIF    ! SSBOND
           enddo      ! j
         enddo        ! iint
       enddo          ! i
@@ -854,6 +863,7 @@ c      include "DIMENSIONS.COMPAR"
       include 'COMMON.INTERACT'
       include 'COMMON.IOUNITS'
       include 'COMMON.CALC'
+      include 'COMMON.SBRIDGE'
       common /srutu/ icall
       logical lprn
       integer icant
@@ -879,6 +889,13 @@ C Calculate SC interaction energy.
 C
         do iint=1,nint_gr(i)
           do j=istart(i,iint),iend(i,iint)
+C in case of diagnostics    write (iout,*) "TU SZUKAJ",i,j,dyn_ss_mask(i),dyn_ss_mask(j)
+            IF (dyn_ss_mask(i).and.dyn_ss_mask(j)) THEN
+              call dyn_ssbond_ene(i,j,evdwij)
+              evdw=evdw+evdwij
+c              if (energy_dec) write (iout,'(a6,2i5,0pf7.3,a3)')
+c     &                        'evdw',i,j,evdwij,' ss'
+            ELSE
             ind=ind+1
             itypj=itype(j)
             dscj_inv=vbld_inv(j+nres)
@@ -961,6 +978,7 @@ C Calculate the radial part of the gradient
 C Calculate angular part of the gradient.
             call sc_grad
             endif
+            ENDIF    ! dyn_ss
           enddo      ! j
         enddo        ! iint
       enddo          ! i
@@ -2822,10 +2840,13 @@ c        write (iout,*) "i",i," ii",ii," iii",iii," jj",jj," jjj",jjj,
 c     &    dhpb(i),dhpb1(i),forcon(i)
 C 24/11/03 AL: SS bridges handled separately because of introducing a specific
 C    distance and angle dependent SS bond potential.
+        if (.not.dyn_ss .and. i.le.nss) then
+C 15/02/13 CC dynamic SSbond - additional check
         if (ii.gt.nres .and. itype(iii).eq.1 .and. itype(jjj).eq.1) then
           call ssbond_ene(iii,jjj,eij)
           ehpb=ehpb+2*eij
 cd          write (iout,*) "eij",eij
+        endif
         else if (ii.gt.nres .and. jj.gt.nres) then
 c Restraints from contact prediction
           dd=dist(ii,jj)
@@ -2957,7 +2978,7 @@ C
       deltat12=om2-om1+2.0d0
       cosphi=om12-om1*om2
       eij=akcm*deltad*deltad+akth*(deltat1*deltat1+deltat2*deltat2)
-     &  +akct*deltad*deltat12
+     &  +akct*deltad*deltat12+ebr
      &  +v1ss*cosphi+v2ss*cosphi*cosphi+v3ss*cosphi*cosphi*cosphi
 c      write(iout,*) i,j,"rij",rij,"d0cm",d0cm," akcm",akcm," akth",akth,
 c     &  " akct",akct," deltad",deltad," deltat",deltat1,deltat2,
@@ -4869,6 +4890,7 @@ C This subroutine calculates multi-body contributions to hydrogen-bonding
 C Set lprn=.true. for debugging
       lprn=.false.
       eturn6=0.0d0
+      ecorr6=0.0d0
 #ifdef MPL
       n_corr=0
       n_corr1=0
@@ -5045,10 +5067,10 @@ cd                write(2,*)'wcorr6',wcorr6,' wturn6',wturn6
 cd                write(2,*)'ijkl',i,j,i+1,j1 
                 if (wcorr6.gt.0.0d0 .and. (j.ne.i+4 .or. j1.ne.i+3
      &               .or. wturn6.eq.0.0d0))then
-cd                  write (iout,*) '******ecorr6: i,j,i+1,j1',i,j,i+1,j1
-                  ecorr6=ecorr6+eello6(i,j,i+1,j1,jj,kk)
-cd                write (iout,*) 'ecorr',ecorr,' ecorr5=',ecorr5,
-cd     &            'ecorr6=',ecorr6
+c                  write (iout,*) '******ecorr6: i,j,i+1,j1',i,j,i+1,j1
+c                  ecorr6=ecorr6+eello6(i,j,i+1,j1,jj,kk)
+c                write (iout,*) 'ecorr',ecorr,' ecorr5=',ecorr5,
+c     &            'ecorr6=',ecorr6, wcorr6
 cd                write (iout,'(4e15.5)') sred_geom,
 cd     &          dabs(eello4(i,j,i+1,j1,jj,kk)),
 cd     &          dabs(eello5(i,j,i+1,j1,jj,kk)),