Jpred secondary structure prediction results

X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?p=unres.git;a=blobdiff_plain;f=examples%2Funres%2FCSA%2FGAB%2Fglobal%2Frestrained%2Fjpred_prediction%2Fjp_fSt_H_1.html;fp=examples%2Funres%2FCSA%2FGAB%2Fglobal%2Frestrained%2Fjpred_prediction%2Fjp_fSt_H_1.html;h=33f46679e505ef588bfbf3c80706650306d138fe;hp=0000000000000000000000000000000000000000;hb=2a226bfc86eabc6e4eae0c3ad1cbc3cb5417a05a;hpb=a0e685f844163003749ba91dfbf4644bcc8cfa30 diff --git a/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.html b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.html new file mode 100644 index 0000000..33f4667 --- /dev/null +++ b/examples/unres/CSA/GAB/global/restrained/jpred_prediction/jp_fSt_H_1.html @@ -0,0 +1,50 @@ +Jpred secondary structure prediction results

jp_fSt_H_1 : NLYIQWLKDGGPSSGRPPPS : jp_fSt_H_1 
+
+           : 1---------11-------- :
+OrigSeq    : NLYIQWLKDGGPSSGRPPPS : OrigSeq
+
+Jnet       : --HHHHHH------------ : Jnet
+jhmm       : --HHHHHH------------ : jhmm
+
+Lupas 14   : -------------------- : Lupas 14
+Lupas 21   : -------------------- : Lupas 21
+Lupas 28   : -------------------- : Lupas 28
+
+Jnet_25    : -BBB-BB---B--------- : Jnet_25
+Jnet_5     : ---B--B------------- : Jnet_5
+Jnet_0     : -------------------- : Jnet_0
+Jnet Rel   : 92115553367777788899 : Jnet Rel
+


+Notes
+Key:
+Colour code for alignment:
+Blue            - Complete identity at a position
+Shades of red   - The more red a position is, the higher the level of
+                  conservation of chemical properties of the amino acids
+Jnet            - Final secondary structure prediction for query
+jalign          - Jnet alignment prediction
+jhmm            - Jnet hmm profile prediction
+jpssm           - Jnet PSIBLAST pssm profile prediction
+
+Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)
+
+Note on coiled coil predictions  - = less than 50% probability
+                                 c = between 50% and 90% probability
+                                 C = greater than 90% probability
+
+Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
+Jnet_5          - Jnet prediction of burial, less than 5% exposure
+Jnet_0          - Jnet prediction of burial, 0% exposure
+Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.
+

+ + + \ No newline at end of file