Jpred secondary structure prediction results

X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?p=unres.git;a=blobdiff_plain;f=examples%2Funres%2FCSA%2FGAB%2FCSA%2Fglobal%2Frestrained%2Fjpred_prediction%2Fjp_fSt_H_1.html;fp=examples%2Funres%2FCSA%2FGAB%2FCSA%2Fglobal%2Frestrained%2Fjpred_prediction%2Fjp_fSt_H_1.html;h=0000000000000000000000000000000000000000;hp=33f46679e505ef588bfbf3c80706650306d138fe;hb=2a226bfc86eabc6e4eae0c3ad1cbc3cb5417a05a;hpb=a0e685f844163003749ba91dfbf4644bcc8cfa30 diff --git a/examples/unres/CSA/GAB/CSA/global/restrained/jpred_prediction/jp_fSt_H_1.html b/examples/unres/CSA/GAB/CSA/global/restrained/jpred_prediction/jp_fSt_H_1.html deleted file mode 100644 index 33f4667..0000000 --- a/examples/unres/CSA/GAB/CSA/global/restrained/jpred_prediction/jp_fSt_H_1.html +++ /dev/null @@ -1,50 +0,0 @@ -Jpred secondary structure prediction results

jp_fSt_H_1 : NLYIQWLKDGGPSSGRPPPS : jp_fSt_H_1 
-
-           : 1---------11-------- :
-OrigSeq    : NLYIQWLKDGGPSSGRPPPS : OrigSeq
-
-Jnet       : --HHHHHH------------ : Jnet
-jhmm       : --HHHHHH------------ : jhmm
-
-Lupas 14   : -------------------- : Lupas 14
-Lupas 21   : -------------------- : Lupas 21
-Lupas 28   : -------------------- : Lupas 28
-
-Jnet_25    : -BBB-BB---B--------- : Jnet_25
-Jnet_5     : ---B--B------------- : Jnet_5
-Jnet_0     : -------------------- : Jnet_0
-Jnet Rel   : 92115553367777788899 : Jnet Rel
-


-Notes
-Key:
-Colour code for alignment:
-Blue            - Complete identity at a position
-Shades of red   - The more red a position is, the higher the level of
-                  conservation of chemical properties of the amino acids
-Jnet            - Final secondary structure prediction for query
-jalign          - Jnet alignment prediction
-jhmm            - Jnet hmm profile prediction
-jpssm           - Jnet PSIBLAST pssm profile prediction
-
-Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)
-
-Note on coiled coil predictions  - = less than 50% probability
-                                 c = between 50% and 90% probability
-                                 C = greater than 90% probability
-
-Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
-Jnet_5          - Jnet prediction of burial, less than 5% exposure
-Jnet_0          - Jnet prediction of burial, 0% exposure
-Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.
-

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