X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?p=unres.git;a=blobdiff_plain;f=examples%2Funres%2FCSA%2FGAB%2FCSA%2Fglobal%2Frestrained%2Fjpred_prediction%2FREADME;fp=examples%2Funres%2FCSA%2FGAB%2FCSA%2Fglobal%2Frestrained%2Fjpred_prediction%2FREADME;h=0000000000000000000000000000000000000000;hp=1c9d5ea0d3b16d4a77a289173dc84d2f8185fa5f;hb=2a226bfc86eabc6e4eae0c3ad1cbc3cb5417a05a;hpb=a0e685f844163003749ba91dfbf4644bcc8cfa30

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-Filename                        Description
---------                        -----------
-jp_fSt_H_1.align                PSIBLAST alignment with gaps and redundancy removed in FASTA format
-jp_fSt_H_1.als                  Alscript command file. Used to generate PS/PDF outputjp_fSt_H_1.blast.gz             PSIBLAST output (compressed)
-jp_fSt_H_1.coils.csv            The output from coils in CSV format
-jp_fSt_H_1.coilseq.lupas_14     The output from coils using a window length of 14
-jp_fSt_H_1.coilseq.lupas_21     The output from coils using a window length of 21
-jp_fSt_H_1.coilseq.lupas_28     The output from coils using a window length of 28
-jp_fSt_H_1.concise              The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment
-jp_fSt_H_1.concise.blc          A BLC file of the prediction and alignment
-jp_fSt_H_1.concise.pdf          A PDF file of the prediction and alignment
-jp_fSt_H_1.concise.ps           A PostScript file of the prediction and alignment
-jp_fSt_H_1.fasta                Input query sequence in FASTA format
-jp_fSt_H_1.hmm                  The HHMer2 profile of the alignment
-jp_fSt_H_1.html                 A HTML file of the prediction and alignment
-jp_fSt_H_1.jalview              A Jalview annotation file to be read in with the .align file to view the predictions in Jalview
-jp_fSt_H_1.jnet                 The output from Jnet
-jp_fSt_H_1.profile              PSIBLAST profile
-jp_fSt_H_1.seq                  Your sequence
-jp_fSt_H_1.simple.html          The brief HTML output of the query sequence and prediction only