clean code and combine piasek and etoh versions make easy install on any system with pbs add javascript instead of separate forms # option of automatic download file from PDB using id # done check input pdb for: # missing residues (chain breaks) - done # unknown residues - done max length (1000), max number of dissulfides (30), etc, and display error check input for other errors (sequence ?) # add web viewer NGL WebGL # done # add BOXX BOXY BOXZ in advanced md and mremd # done dynamic dissulfides input - all and selected cys homology restraints input # secondary structure restraints # done other restraints input # SAXS input # done automatic secondary structure restrains (psipred) MREMD - add cluster parameters, change after run and rerun only cluster analysis - button to make movie from selected trajectory after run # examples # done gallery documentation automatic rm of old jobs ? ### NAR requirements: # include a simple mechanism to try out sample data provided by the authors, # for example, a button for automatic loading of the data. Sample data must be # accessible to users so that they can confirm data formatting requirements # OK # contain help pages or a tutorial with links to sample output that performs # interactively in the same way as real output. The help pages must include # information on how to interpret the results returned by the web server # OK # be primarily web-based and viewable on the website. Use of browser plugins # for data visualization is encouraged. However, use of Flash plugins is # discouraged due to security issues and websites that use Java plugins will # no longer be accepted # OK # provide a web link to the results if the website is not able to return # results immediately. The link should be provided at the time of data # submission and allow the user to bookmark and access the results at a later # time. Ideally, the link will report the status of the job (queued, running, # or finished). Do not assume that users will provide an email address for # results notification. Any request for an email must state that it is # optional. Websites that use a guest login will not be approved # # OK link uses task.id and user.id # http://ha1.chem.univ.gda.pl:8001/details1/19da81cb0ad5492dac8e4eaefd28949e/942/ links are not save - lazy user can read other lazy users jobs ? # keep every user’s submitted data private and not viewable by anyone other # than the user or those given permission by the user # # OK - additionaly blocks links of regular user without login