From d03bf58e6dc3d690486f8eb7a8f18ad34938c71f Mon Sep 17 00:00:00 2001 From: Cezary Czaplewski Date: Wed, 16 Oct 2019 16:13:45 +0200 Subject: [PATCH] unres paper list update Conflicts: django_simple/todo/templates/about.html --- django_simple/todo/templates/about.html | 30 ++++++++++++++++++++++++++++-- 1 file changed, 28 insertions(+), 2 deletions(-) diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html index 72262df..a1916c0 100644 --- a/django_simple/todo/templates/about.html +++ b/django_simple/todo/templates/about.html @@ -38,6 +38,13 @@ folds of fragments with 50-200 residues in length.

Selected references:

    +
  1. +C. Czaplewski, A. Karczyńska, A.K. Sieradzan, A. Liwo, +UNRES server for physics-based coarse-grained simulations and prediction of +protein structure, dynamics and thermodynamics. + Nucleic Acids Res. 2018, 46. W304-W309. +gky328 +
  2. A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M. @@ -59,7 +66,7 @@ A. Liwo, S. Ołdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A. Scheraga. Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and -thermodynamics. J. Chem. Theory Comput. 2010, 6, 890-909. +thermodynamics. J. Chem. Theory Comput. 2010, 6, 890-909.
  3. @@ -92,7 +99,26 @@ A. Karczyńska, M.A. Mozolewska, P. Krupa, A. Giełdoń, A. Liwo, C. Czaplewski.Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information. -Proteins: Struct. Funct. Bioinf. 2017, CASP12 special issue DOI: 10.1002/prot.25421 +Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239. +
    4. + +
  4. +A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I. +Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej. +A general method for the derivation of the functional forms of the effective +energy terms in coarse-grained energy functions of polymers. III. +Determination of scale-consistent backbone-local and correlation potentials +in the UNRES force field and force-field calibration and validation. +J. Chem. Phys. 2019, 150, 155104. +
    5. + +
  5. +E.A. Lubecka, A.S. Karczyńska, A.G. Lipska, A.K.Sieradzan, K. Zięba, C. Sikorska, +U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Ł. Golon, A. Giełdoń, +C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo +Evaluation of the scale-consistent UNRES force field in template-free +prediction of protein structures in the CASP13 experiment. +J. Mol. Graph. Model. 2019, 92, 154-166.
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