From: Cezary Czaplewski Date: Wed, 16 Oct 2019 14:23:48 +0000 (+0200) Subject: ref list format update X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=commitdiff_plain;h=f84bee65e9c8a2ce6a082e85160a5ccbabe76ebf;p=django_unres.git ref list format update --- diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html index bb20adb..f3d3103 100644 --- a/django_simple/todo/templates/about.html +++ b/django_simple/todo/templates/about.html @@ -39,7 +39,7 @@ folds of fragments with 50-200 residues in length. Selected references:
  1. -C. Czaplewski, A. Karczyńska, A.K. Sieradzan, A. Liwo.
    +C. Czaplewski, A. Karczyńska, A.K. Sieradzan, A. Liwo. UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.
    Nucleic Acids Res. 2018, 46. W304-W309. @@ -48,14 +48,14 @@ protein structure, dynamics and thermodynamics.
  2. A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M. -Makowski, R.K. Murarka, H.A. Scheraga.
    Simulation of protein structure and +Makowski, R.K. Murarka, H.A. Scheraga. Simulation of protein structure and dynamics with the coarse-grained UNRES force field.
    In: Coarse-Graining of Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis, 2008, Chapter 8, pp. 107-122
  3. -Y. He, Y. Xiao, A. Liwo, H.A. Scheraga.
    Exploring the parameter space of the +Y. He, Y. Xiao, A. Liwo, H.A. Scheraga. Exploring the parameter space of the coarse-grained UNRES force field by random search: selecting a transferable medium-resolution force field.
    J. Comput. Chem. 2009, 30, 2127-2135. @@ -63,7 +63,7 @@ medium-resolution force field.
  4. A. Liwo, S. Ołdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A. -Scheraga.
    Implementation of molecular dynamics and its extensions with the +Scheraga. Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamics.
    J. Chem. Theory Comput. 2010, 6, 890-909. @@ -73,14 +73,14 @@ thermodynamics.
    J. Chem. Theory Comput. 2010, 6, 890-909. A. Liwo, M. Baranowski, C. Czaplewski, E. Gołaś, Y. He, D. Jagieła, P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski, S. Ołdziej, H.A. Scheraga, A.K. Sieradzan, R. Ślusarz, T. Wirecki, Y. Yin, -B. Zaborowski.
    +B. Zaborowski. A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions.
    J. Mol. Model. 2014, 20, 1-15.
  5. -A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
    +A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski. Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the United Residue (UNRES) force field for protein simulations.
    @@ -88,7 +88,7 @@ field for protein simulations.
  6. -P. Krupa, A. Hałabis, W. Żmudzińska, S. Ołdziej, H.A. Scheraga, A. Liwo.
    +P. Krupa, A. Hałabis, W. Żmudzińska, S. Ołdziej, H.A. Scheraga, A. Liwo. Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics.
    J. Chem. Inf. Model. 2017, 57, 2364–2377. @@ -96,7 +96,7 @@ Protein Structure and Dynamics.
  7. A. Karczyńska, M.A. Mozolewska, P. Krupa, A. Giełdoń, A. Liwo, C. -Czaplewski.
    Prediction of protein structure with the coarse-grained UNRES +Czaplewski. Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information.
    Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239. @@ -104,7 +104,7 @@ information.
  8. A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I. -Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej.
    +Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej. A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials @@ -115,7 +115,7 @@ in the UNRES force field and force-field calibration and validation.
  9. E.A. Lubecka, A.S. Karczyńska, A.G. Lipska, A.K.Sieradzan, K. Zięba, C. Sikorska, U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Ł. Golon, A. Giełdoń, -C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo.
    +C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo. Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
    J. Mol. Graph. Model. 2019, 92, 154-166.