From: Cezary Czaplewski Date: Fri, 20 Mar 2020 11:24:43 +0000 (+0100) Subject: ctest dock NEWCORR X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=commitdiff_plain;h=c2dd27cc9bb81bf584cd33ed081642fa8ff0f582;p=unres.git ctest dock NEWCORR --- diff --git a/ctest/dock_newcorr/2WFU_A.pdb b/ctest/dock_newcorr/2WFU_A.pdb new file mode 100644 index 0000000..5c20de0 --- /dev/null +++ b/ctest/dock_newcorr/2WFU_A.pdb @@ -0,0 +1,161 @@ +ATOM 1 N GLY A 1 18.230 4.903 9.716 1.00 28.23 N +ATOM 2 CA GLY A 1 16.795 5.303 9.674 1.00 26.95 C +ATOM 3 C GLY A 1 15.903 4.106 9.901 1.00 26.34 C +ATOM 4 O GLY A 1 16.336 3.112 10.496 1.00 25.78 O +ATOM 5 N VAL A 2 14.648 4.221 9.474 1.00 25.88 N +ATOM 6 CA VAL A 2 13.627 3.183 9.727 1.00 25.44 C +ATOM 7 C VAL A 2 13.981 1.814 9.147 1.00 25.29 C +ATOM 8 O VAL A 2 13.737 0.794 9.782 1.00 24.50 O +ATOM 9 CB VAL A 2 12.180 3.666 9.357 1.00 25.92 C +ATOM 10 CG1 VAL A 2 11.954 3.744 7.847 1.00 26.79 C +ATOM 11 CG2 VAL A 2 11.074 2.815 10.029 1.00 26.46 C +ATOM 12 N VAL A 3 14.567 1.792 7.942 1.00 25.41 N +ATOM 13 CA VAL A 3 15.020 0.524 7.365 1.00 24.91 C +ATOM 14 C VAL A 3 16.105 -0.118 8.242 1.00 24.49 C +ATOM 15 O VAL A 3 16.056 -1.305 8.572 1.00 23.75 O +ATOM 16 CB VAL A 3 15.492 0.705 5.885 1.00 25.10 C +ATOM 17 CG1 VAL A 3 15.909 -0.638 5.270 1.00 25.30 C +ATOM 18 CG2 VAL A 3 14.381 1.329 5.065 1.00 25.09 C +ATOM 19 N ASP A 4 17.098 0.654 8.646 1.00 24.84 N +ATOM 20 CA ASP A 4 18.079 0.067 9.522 1.00 25.25 C +ATOM 21 C ASP A 4 17.462 -0.448 10.831 1.00 24.23 C +ATOM 22 O ASP A 4 17.802 -1.539 11.276 1.00 24.33 O +ATOM 23 CB ASP A 4 19.206 1.037 9.849 1.00 25.95 C +ATOM 24 CG ASP A 4 20.336 0.345 10.555 1.00 30.13 C +ATOM 25 OD1 ASP A 4 21.131 -0.360 9.884 1.00 34.07 O +ATOM 26 OD2 ASP A 4 20.411 0.485 11.791 1.00 35.94 O +ATOM 27 N SER A 5 16.551 0.318 11.425 1.00 23.38 N +ATOM 28 CA SER A 5 16.018 -0.068 12.733 1.00 23.67 C +ATOM 29 C SER A 5 14.966 -1.197 12.715 1.00 23.52 C +ATOM 30 O SER A 5 14.885 -1.961 13.689 1.00 23.70 O +ATOM 31 CB SER A 5 15.445 1.161 13.459 1.00 23.38 C +ATOM 32 OG SER A 5 16.511 2.027 13.882 1.00 24.84 O +ATOM 33 N CYS A 6 14.151 -1.260 11.649 1.00 23.25 N +ATOM 34 CA CYS A 6 12.933 -2.098 11.605 1.00 23.79 C +ATOM 35 C CYS A 6 12.934 -3.155 10.494 1.00 23.94 C +ATOM 36 O CYS A 6 12.054 -4.026 10.480 1.00 22.81 O +ATOM 37 CB CYS A 6 11.683 -1.207 11.500 1.00 24.12 C +ATOM 38 SG CYS A 6 11.463 -0.110 12.949 1.00 25.12 S +ATOM 39 N CYS A 7 13.907 -3.079 9.577 1.00 23.80 N +ATOM 40 CA CYS A 7 14.064 -4.074 8.484 1.00 24.46 C +ATOM 41 C CYS A 7 15.332 -4.873 8.649 1.00 24.96 C +ATOM 42 O CYS A 7 15.325 -6.104 8.508 1.00 25.76 O +ATOM 43 CB CYS A 7 14.077 -3.378 7.109 1.00 24.78 C +ATOM 44 SG CYS A 7 14.603 -4.366 5.689 1.00 26.21 S +ATOM 45 N ARG A 8 16.447 -4.164 8.849 1.00 24.83 N +ATOM 46 CA ARG A 8 17.745 -4.827 9.109 1.00 25.46 C +ATOM 47 C ARG A 8 17.853 -5.417 10.519 1.00 24.81 C +ATOM 48 O ARG A 8 18.723 -6.266 10.806 1.00 24.82 O +ATOM 49 CB ARG A 8 18.894 -3.871 8.797 1.00 25.20 C +ATOM 50 CG ARG A 8 18.884 -3.448 7.341 1.00 25.55 C +ATOM 51 CD ARG A 8 19.916 -2.396 6.986 1.00 27.54 C +ATOM 52 NE ARG A 8 21.268 -2.836 7.266 1.00 31.59 N +ATOM 53 CZ ARG A 8 22.086 -3.405 6.370 1.00 33.27 C +ATOM 54 NH1 ARG A 8 21.705 -3.612 5.110 1.00 30.56 N +ATOM 55 NH2 ARG A 8 23.305 -3.752 6.745 1.00 37.60 N +ATOM 56 N ASN A 9 16.934 -4.978 11.379 1.00 24.16 N +ATOM 57 CA ASN A 9 16.831 -5.403 12.758 1.00 24.72 C +ATOM 58 C ASN A 9 15.332 -5.386 13.068 1.00 24.90 C +ATOM 59 O ASN A 9 14.537 -4.802 12.307 1.00 23.58 O +ATOM 60 CB ASN A 9 17.621 -4.439 13.665 1.00 25.74 C +ATOM 61 CG ASN A 9 19.129 -4.495 13.405 1.00 27.91 C +ATOM 62 OD1 ASN A 9 19.788 -5.470 13.749 1.00 31.23 O +ATOM 63 ND2 ASN A 9 19.673 -3.455 12.771 1.00 29.96 N +ATOM 64 N SER A 10 14.915 -6.058 14.128 1.00 24.54 N +ATOM 65 CA SER A 10 13.534 -5.884 14.550 1.00 24.95 C +ATOM 66 C SER A 10 13.452 -4.622 15.414 1.00 24.44 C +ATOM 67 O SER A 10 14.461 -4.191 15.999 1.00 24.32 O +ATOM 68 CB SER A 10 13.006 -7.130 15.266 1.00 25.87 C +ATOM 69 OG SER A 10 13.668 -7.355 16.498 1.00 28.76 O +ATOM 70 N CYS A 11 12.275 -4.001 15.481 1.00 23.98 N +ATOM 71 CA CYS A 11 12.133 -2.832 16.349 1.00 24.19 C +ATOM 72 C CYS A 11 10.802 -2.892 17.098 1.00 24.36 C +ATOM 73 O CYS A 11 9.882 -3.615 16.696 1.00 25.50 O +ATOM 74 CB CYS A 11 12.204 -1.561 15.494 1.00 24.84 C +ATOM 75 SG CYS A 11 10.772 -1.380 14.392 1.00 24.93 S +ATOM 76 N SER A 12 10.694 -2.133 18.180 1.00 23.94 N +ATOM 77 CA SER A 12 9.465 -2.070 18.928 1.00 23.32 C +ATOM 78 C SER A 12 8.516 -1.175 18.146 1.00 22.71 C +ATOM 79 O SER A 12 8.934 -0.391 17.295 1.00 22.56 O +ATOM 80 CB SER A 12 9.715 -1.485 20.337 1.00 22.85 C +ATOM 81 OG SER A 12 10.019 -0.090 20.273 1.00 20.95 O +ATOM 82 N PHE A 13 7.237 -1.255 18.483 1.00 22.23 N +ATOM 83 CA PHE A 13 6.284 -0.393 17.843 1.00 22.99 C +ATOM 84 C PHE A 13 6.544 1.079 18.147 1.00 23.33 C +ATOM 85 O PHE A 13 6.400 1.934 17.245 1.00 23.58 O +ATOM 86 CB PHE A 13 4.847 -0.807 18.178 1.00 22.86 C +ATOM 87 CG PHE A 13 3.806 0.006 17.472 1.00 22.36 C +ATOM 88 CD1 PHE A 13 3.397 -0.326 16.160 1.00 24.58 C +ATOM 89 CD2 PHE A 13 3.196 1.079 18.116 1.00 25.52 C +ATOM 90 CE1 PHE A 13 2.424 0.450 15.512 1.00 23.56 C +ATOM 91 CE2 PHE A 13 2.192 1.848 17.476 1.00 28.44 C +ATOM 92 CZ PHE A 13 1.812 1.525 16.178 1.00 24.75 C +ATOM 93 N SER A 14 6.971 1.392 19.374 1.00 22.92 N +ATOM 94 CA SER A 14 7.245 2.792 19.704 1.00 23.78 C +ATOM 95 C SER A 14 8.443 3.335 18.912 1.00 22.99 C +ATOM 96 O SER A 14 8.457 4.527 18.605 1.00 22.38 O +ATOM 97 CB SER A 14 7.411 3.028 21.215 1.00 23.86 C +ATOM 98 OG SER A 14 8.373 2.104 21.713 1.00 28.91 O +ATOM 99 N THR A 15 9.406 2.477 18.570 1.00 21.61 N +ATOM 100 CA THR A 15 10.529 2.849 17.692 1.00 22.47 C +ATOM 101 C THR A 15 10.076 3.147 16.251 1.00 22.47 C +ATOM 102 O THR A 15 10.513 4.137 15.646 1.00 22.91 O +ATOM 103 CB THR A 15 11.632 1.745 17.679 1.00 21.94 C +ATOM 104 OG1 THR A 15 12.143 1.591 18.998 1.00 24.54 O +ATOM 105 CG2 THR A 15 12.820 2.125 16.775 1.00 20.96 C +ATOM 106 N LEU A 16 9.218 2.285 15.713 1.00 22.64 N +ATOM 107 CA LEU A 16 8.601 2.542 14.397 1.00 23.38 C +ATOM 108 C LEU A 16 7.950 3.914 14.418 1.00 23.19 C +ATOM 109 O LEU A 16 8.165 4.710 13.542 1.00 23.55 O +ATOM 110 CB LEU A 16 7.531 1.528 14.118 1.00 22.93 C +ATOM 111 CG LEU A 16 6.915 1.613 12.703 1.00 24.17 C +ATOM 112 CD1 LEU A 16 7.939 1.311 11.620 1.00 25.00 C +ATOM 113 CD2 LEU A 16 5.688 0.682 12.645 1.00 25.66 C +ATOM 114 N ARG A 17 7.088 4.125 15.397 1.00 23.18 N +ATOM 115 CA ARG A 17 6.389 5.400 15.571 1.00 25.38 C +ATOM 116 C ARG A 17 7.319 6.614 15.658 1.00 25.75 C +ATOM 117 O ARG A 17 6.969 7.708 15.206 1.00 25.40 O +ATOM 118 CB ARG A 17 5.513 5.322 16.830 1.00 25.81 C +ATOM 119 CG ARG A 17 4.320 4.414 16.656 1.00 30.48 C +ATOM 120 CD ARG A 17 3.165 5.210 16.114 1.00 37.86 C +ATOM 121 NE ARG A 17 2.728 6.262 17.020 1.00 40.36 N +ATOM 122 CZ ARG A 17 2.363 7.487 16.640 1.00 42.12 C +ATOM 123 NH1 ARG A 17 2.421 7.837 15.364 1.00 42.72 N +ATOM 124 NH2 ARG A 17 1.965 8.378 17.540 1.00 42.89 N +ATOM 125 N ALA A 18 8.497 6.441 16.251 1.00 25.66 N +ATOM 126 CA ALA A 18 9.446 7.567 16.391 1.00 25.85 C +ATOM 127 C ALA A 18 10.033 7.969 15.047 1.00 25.48 C +ATOM 128 O ALA A 18 10.581 9.040 14.912 1.00 25.40 O +ATOM 129 CB ALA A 18 10.576 7.236 17.375 1.00 25.73 C +ATOM 130 N TYR A 19 9.908 7.101 14.051 1.00 26.27 N +ATOM 131 CA TYR A 19 10.420 7.402 12.731 1.00 27.14 C +ATOM 132 C TYR A 19 9.383 8.090 11.855 1.00 27.61 C +ATOM 133 O TYR A 19 9.667 8.392 10.684 1.00 29.08 O +ATOM 134 CB TYR A 19 10.983 6.136 12.065 1.00 26.44 C +ATOM 135 CG TYR A 19 12.382 5.763 12.527 1.00 25.09 C +ATOM 136 CD1 TYR A 19 12.592 4.678 13.365 1.00 24.77 C +ATOM 137 CD2 TYR A 19 13.506 6.459 12.056 1.00 25.15 C +ATOM 138 CE1 TYR A 19 13.869 4.326 13.772 1.00 26.48 C +ATOM 139 CE2 TYR A 19 14.778 6.114 12.449 1.00 24.51 C +ATOM 140 CZ TYR A 19 14.955 5.041 13.313 1.00 25.85 C +ATOM 141 OH TYR A 19 16.218 4.687 13.681 1.00 27.58 O +ATOM 142 N CYS A 20 8.190 8.332 12.416 1.00 27.45 N +ATOM 143 CA CYS A 20 7.149 9.149 11.760 1.00 28.63 C +ATOM 144 C CYS A 20 7.579 10.594 11.704 1.00 29.12 C +ATOM 145 O CYS A 20 8.437 11.027 12.486 1.00 29.95 O +ATOM 146 CB CYS A 20 5.808 9.082 12.512 1.00 27.21 C +ATOM 147 SG CYS A 20 5.054 7.400 12.643 1.00 27.12 S +ATOM 148 N ASP A 21 6.957 11.355 10.809 1.00 29.71 N +ATOM 149 CA ASP A 21 7.069 12.816 10.878 1.00 31.80 C +ATOM 150 C ASP A 21 6.156 13.379 11.967 1.00 32.16 C +ATOM 151 O ASP A 21 5.066 12.863 12.223 1.00 32.73 O +ATOM 152 CB ASP A 21 6.743 13.456 9.532 1.00 31.84 C +ATOM 153 CG ASP A 21 7.737 13.075 8.451 1.00 34.01 C +ATOM 154 OD1 ASP A 21 8.776 12.448 8.773 1.00 37.23 O +ATOM 155 OD2 ASP A 21 7.485 13.399 7.276 1.00 36.47 O +ATOM 156 N SER A 22 6.636 14.421 12.624 1.00 32.79 N +ATOM 157 CA SER A 22 5.831 15.204 13.544 1.00 33.86 C +ATOM 158 C SER A 22 6.297 16.650 13.500 1.00 33.85 C +ATOM 159 O SER A 22 5.699 17.505 12.842 1.00 34.42 O +ATOM 160 CB SER A 22 5.960 14.654 14.965 1.00 33.89 C +ATOM 161 OG SER A 22 7.297 14.662 15.416 1.00 34.18 O diff --git a/ctest/dock_newcorr/2WFU_B.pdb b/ctest/dock_newcorr/2WFU_B.pdb new file mode 100644 index 0000000..83df2b5 --- /dev/null +++ b/ctest/dock_newcorr/2WFU_B.pdb @@ -0,0 +1,173 @@ +ATOM 163 N ASN B 1 7.777 -9.125 21.533 1.00 33.02 N +ATOM 164 CA ASN B 1 7.394 -7.701 21.494 1.00 32.93 C +ATOM 165 C ASN B 1 8.165 -6.972 20.418 1.00 32.33 C +ATOM 166 O ASN B 1 8.826 -5.961 20.667 1.00 32.66 O +ATOM 167 CB ASN B 1 7.627 -6.995 22.843 1.00 34.21 C +ATOM 168 CG ASN B 1 6.898 -5.663 22.919 1.00 35.43 C +ATOM 169 OD1 ASN B 1 6.894 -4.997 23.955 1.00 39.65 O +ATOM 170 ND2 ASN B 1 6.249 -5.277 21.811 1.00 34.80 N +ATOM 171 N SER B 2 8.077 -7.464 19.197 1.00 31.35 N +ATOM 172 CA SER B 2 8.918 -6.884 18.179 1.00 30.61 C +ATOM 173 C SER B 2 8.236 -6.894 16.849 1.00 28.89 C +ATOM 174 O SER B 2 7.254 -7.611 16.627 1.00 29.38 O +ATOM 175 CB SER B 2 10.252 -7.634 18.097 1.00 30.61 C +ATOM 176 OG SER B 2 10.103 -8.762 17.271 1.00 33.42 O +ATOM 177 N LEU B 3 8.738 -6.068 15.952 1.00 26.72 N +ATOM 178 CA LEU B 3 8.265 -6.161 14.580 1.00 25.18 C +ATOM 179 C LEU B 3 9.430 -6.045 13.615 1.00 24.27 C +ATOM 180 O LEU B 3 10.429 -5.380 13.873 1.00 24.05 O +ATOM 181 CB LEU B 3 7.174 -5.139 14.284 1.00 25.73 C +ATOM 182 CG LEU B 3 7.627 -3.682 14.188 1.00 23.35 C +ATOM 183 CD1 LEU B 3 7.962 -3.282 12.724 1.00 27.40 C +ATOM 184 CD2 LEU B 3 6.522 -2.803 14.735 1.00 26.91 C +ATOM 185 N ARG B 4 9.286 -6.694 12.477 1.00 23.24 N +ATOM 186 CA ARG B 4 10.292 -6.606 11.476 1.00 23.81 C +ATOM 187 C ARG B 4 9.587 -6.562 10.140 1.00 23.82 C +ATOM 188 O ARG B 4 8.791 -7.452 9.836 1.00 23.19 O +ATOM 189 CB ARG B 4 11.181 -7.837 11.555 1.00 23.89 C +ATOM 190 CG ARG B 4 12.356 -7.683 10.679 1.00 29.24 C +ATOM 191 CD ARG B 4 13.449 -8.499 11.250 1.00 33.23 C +ATOM 192 NE ARG B 4 14.623 -8.240 10.478 1.00 33.66 N +ATOM 193 CZ ARG B 4 15.799 -8.768 10.720 1.00 33.11 C +ATOM 194 NH1 ARG B 4 15.939 -9.618 11.724 1.00 36.61 N +ATOM 195 NH2 ARG B 4 16.807 -8.472 9.917 1.00 30.33 N +ATOM 196 N ALA B 5 9.851 -5.514 9.370 1.00 22.74 N +ATOM 197 CA ALA B 5 9.252 -5.359 8.056 1.00 24.42 C +ATOM 198 C ALA B 5 10.204 -4.684 7.073 1.00 25.45 C +ATOM 199 O ALA B 5 10.924 -3.742 7.441 1.00 23.37 O +ATOM 200 CB ALA B 5 7.949 -4.606 8.162 1.00 25.02 C +ATOM 201 N CYS B 6 10.214 -5.193 5.834 1.00 25.89 N +ATOM 202 CA CYS B 6 11.090 -4.713 4.783 1.00 27.91 C +ATOM 203 C CYS B 6 10.248 -4.437 3.532 1.00 29.07 C +ATOM 204 O CYS B 6 9.114 -4.955 3.389 1.00 30.54 O +ATOM 205 CB CYS B 6 12.216 -5.728 4.469 1.00 27.14 C +ATOM 206 SG CYS B 6 13.453 -6.025 5.744 1.00 29.35 S +ATOM 207 N GLY B 7 10.766 -3.581 2.658 1.00 30.07 N +ATOM 208 CA GLY B 7 10.084 -3.274 1.405 1.00 29.90 C +ATOM 209 C GLY B 7 8.703 -2.668 1.624 1.00 29.69 C +ATOM 210 O GLY B 7 8.519 -1.915 2.585 1.00 29.52 O +ATOM 211 N PRO B 8 7.738 -2.980 0.729 1.00 28.92 N +ATOM 212 CA PRO B 8 6.397 -2.394 0.712 1.00 27.64 C +ATOM 213 C PRO B 8 5.624 -2.549 2.038 1.00 26.51 C +ATOM 214 O PRO B 8 4.876 -1.659 2.404 1.00 25.63 O +ATOM 215 CB PRO B 8 5.691 -3.188 -0.374 1.00 29.36 C +ATOM 216 CG PRO B 8 6.778 -3.579 -1.307 1.00 29.26 C +ATOM 217 CD PRO B 8 7.936 -3.911 -0.410 1.00 30.42 C +ATOM 218 N ALA B 9 5.801 -3.678 2.718 1.00 24.26 N +ATOM 219 CA ALA B 9 5.135 -3.901 4.015 1.00 23.27 C +ATOM 220 C ALA B 9 5.565 -2.853 5.028 1.00 21.89 C +ATOM 221 O ALA B 9 4.763 -2.404 5.844 1.00 21.62 O +ATOM 222 CB ALA B 9 5.473 -5.300 4.543 1.00 22.17 C +ATOM 223 N LEU B 10 6.837 -2.471 4.983 1.00 22.23 N +ATOM 224 CA LEU B 10 7.341 -1.520 5.957 1.00 22.40 C +ATOM 225 C LEU B 10 6.732 -0.170 5.629 1.00 23.35 C +ATOM 226 O LEU B 10 6.280 0.544 6.509 1.00 22.50 O +ATOM 227 CB LEU B 10 8.867 -1.482 5.967 1.00 21.92 C +ATOM 228 CG LEU B 10 9.447 -0.374 6.867 1.00 21.79 C +ATOM 229 CD1 LEU B 10 9.135 -0.654 8.337 1.00 22.63 C +ATOM 230 CD2 LEU B 10 10.956 -0.255 6.666 1.00 21.99 C +ATOM 231 N MET B 11 6.670 0.154 4.347 1.00 23.15 N +ATOM 232 CA MET B 11 6.064 1.417 3.971 1.00 24.74 C +ATOM 233 C MET B 11 4.566 1.418 4.323 1.00 23.95 C +ATOM 234 O MET B 11 4.071 2.422 4.814 1.00 22.80 O +ATOM 235 CB MET B 11 6.348 1.756 2.496 1.00 25.08 C +ATOM 236 CG MET B 11 7.871 1.889 2.178 1.00 30.95 C +ATOM 237 SD MET B 11 8.800 3.187 3.075 1.00 42.86 S +ATOM 238 CE MET B 11 9.806 2.229 4.203 1.00 36.96 C +ATOM 239 N ASP B 12 3.873 0.280 4.155 1.00 23.76 N +ATOM 240 CA ASP B 12 2.424 0.208 4.497 1.00 23.79 C +ATOM 241 C ASP B 12 2.182 0.380 6.015 1.00 24.03 C +ATOM 242 O ASP B 12 1.204 1.034 6.459 1.00 24.81 O +ATOM 243 CB ASP B 12 1.833 -1.150 4.100 1.00 23.87 C +ATOM 244 CG ASP B 12 1.706 -1.360 2.574 1.00 27.76 C +ATOM 245 OD1 ASP B 12 1.520 -0.421 1.801 1.00 28.65 O +ATOM 246 OD2 ASP B 12 1.771 -2.522 2.159 1.00 30.65 O +ATOM 247 N MET B 13 3.088 -0.194 6.800 0.50 22.32 N +ATOM 248 CA MET B 13 3.030 -0.068 8.253 0.50 22.27 C +ATOM 249 C MET B 13 3.290 1.367 8.715 1.00 23.91 C +ATOM 250 O MET B 13 2.554 1.890 9.547 1.00 24.64 O +ATOM 251 CB MET B 13 3.982 -1.066 8.911 0.50 22.09 C +ATOM 252 CG MET B 13 3.381 -2.492 8.962 0.50 23.66 C +ATOM 253 SD MET B 13 1.782 -2.604 9.828 0.50 34.49 S +ATOM 254 CE MET B 13 1.906 -1.416 11.168 0.50 27.34 C +ATOM 255 N LEU B 14 4.299 2.021 8.142 1.00 24.10 N +ATOM 256 CA LEU B 14 4.531 3.441 8.452 1.00 25.59 C +ATOM 257 C LEU B 14 3.335 4.292 8.062 1.00 25.96 C +ATOM 258 O LEU B 14 2.984 5.235 8.759 1.00 26.04 O +ATOM 259 CB LEU B 14 5.752 3.959 7.713 1.00 25.58 C +ATOM 260 CG LEU B 14 7.108 3.706 8.366 1.00 26.83 C +ATOM 261 CD1 LEU B 14 8.211 3.994 7.344 1.00 27.29 C +ATOM 262 CD2 LEU B 14 7.281 4.557 9.636 1.00 27.12 C +ATOM 263 N ARG B 15 2.708 3.961 6.942 1.00 26.18 N +ATOM 264 CA ARG B 15 1.557 4.706 6.490 1.00 26.93 C +ATOM 265 C ARG B 15 0.434 4.695 7.543 1.00 26.95 C +ATOM 266 O ARG B 15 -0.108 5.745 7.860 1.00 27.66 O +ATOM 267 CB ARG B 15 1.084 4.207 5.119 1.00 27.18 C +ATOM 268 CG ARG B 15 -0.082 4.997 4.551 1.00 30.65 C +ATOM 269 CD ARG B 15 -0.087 4.946 3.031 1.00 34.85 C +ATOM 270 NE ARG B 15 -0.395 3.614 2.535 1.00 36.65 N +ATOM 271 CZ ARG B 15 -0.360 3.252 1.250 1.00 38.61 C +ATOM 272 NH1 ARG B 15 -0.011 4.112 0.301 1.00 38.36 N +ATOM 273 NH2 ARG B 15 -0.663 2.010 0.918 1.00 39.33 N +ATOM 274 N VAL B 16 0.098 3.534 8.097 1.00 25.17 N +ATOM 275 CA VAL B 16 -0.976 3.478 9.087 1.00 25.70 C +ATOM 276 C VAL B 16 -0.523 3.865 10.514 1.00 25.06 C +ATOM 277 O VAL B 16 -1.345 4.291 11.316 1.00 25.34 O +ATOM 278 CB VAL B 16 -1.707 2.097 9.086 1.00 25.20 C +ATOM 279 CG1 VAL B 16 -2.364 1.882 7.739 1.00 24.24 C +ATOM 280 CG2 VAL B 16 -0.765 0.931 9.457 1.00 26.54 C +ATOM 281 N ALA B 17 0.757 3.651 10.846 1.00 25.74 N +ATOM 282 CA ALA B 17 1.270 4.027 12.181 1.00 26.71 C +ATOM 283 C ALA B 17 1.463 5.546 12.314 1.00 27.40 C +ATOM 284 O ALA B 17 1.537 6.073 13.439 1.00 26.17 O +ATOM 285 CB ALA B 17 2.582 3.342 12.477 1.00 26.10 C +ATOM 286 N CYS B 18 1.604 6.241 11.182 1.00 27.75 N +ATOM 287 CA CYS B 18 2.018 7.653 11.246 1.00 30.16 C +ATOM 288 C CYS B 18 0.874 8.545 10.800 1.00 32.63 C +ATOM 289 O CYS B 18 0.453 8.457 9.663 1.00 33.66 O +ATOM 290 CB CYS B 18 3.251 7.928 10.375 1.00 29.69 C +ATOM 291 SG CYS B 18 4.706 6.903 10.750 1.00 27.57 S +ATOM 292 N PRO B 19 0.384 9.417 11.692 1.00 35.61 N +ATOM 293 CA PRO B 19 -0.756 10.280 11.313 1.00 36.79 C +ATOM 294 C PRO B 19 -0.335 11.358 10.311 1.00 38.57 C +ATOM 295 O PRO B 19 -1.008 11.547 9.284 1.00 38.86 O +ATOM 296 CB PRO B 19 -1.209 10.893 12.643 1.00 37.04 C +ATOM 297 CG PRO B 19 -0.356 10.252 13.725 1.00 36.65 C +ATOM 298 CD PRO B 19 0.863 9.687 13.059 1.00 35.75 C +ATOM 299 N ASN B 20 0.773 12.040 10.608 1.00 40.17 N +ATOM 300 CA ASN B 20 1.302 13.135 9.777 1.00 41.84 C +ATOM 301 C ASN B 20 2.319 12.659 8.727 1.00 42.49 C +ATOM 302 O ASN B 20 2.981 13.474 8.075 1.00 43.37 O +ATOM 303 CB ASN B 20 1.953 14.224 10.653 1.00 41.95 C +ATOM 304 CG ASN B 20 1.022 14.760 11.730 1.00 42.67 C +ATOM 305 OD1 ASN B 20 -0.061 15.279 11.439 1.00 43.67 O +ATOM 306 ND2 ASN B 20 1.448 14.641 12.986 1.00 44.42 N +ATOM 307 N GLY B 21 2.448 11.345 8.579 1.00 43.01 N +ATOM 308 CA GLY B 21 3.307 10.759 7.547 1.00 43.59 C +ATOM 309 C GLY B 21 4.765 10.573 7.935 1.00 43.93 C +ATOM 310 O GLY B 21 5.116 10.609 9.110 1.00 43.44 O +ATOM 311 N PHE B 22 5.605 10.381 6.920 1.00 44.41 N +ATOM 312 CA PHE B 22 7.020 10.035 7.072 1.00 45.10 C +ATOM 313 C PHE B 22 7.719 10.326 5.744 1.00 45.44 C +ATOM 314 O PHE B 22 7.081 10.277 4.695 1.00 45.70 O +ATOM 315 CB PHE B 22 7.167 8.548 7.432 1.00 44.91 C +ATOM 316 CG PHE B 22 6.626 7.609 6.377 1.00 45.86 C +ATOM 317 CD1 PHE B 22 5.262 7.313 6.316 1.00 45.83 C +ATOM 318 CD2 PHE B 22 7.485 7.020 5.447 1.00 45.83 C +ATOM 319 CE1 PHE B 22 4.765 6.449 5.343 1.00 46.40 C +ATOM 320 CE2 PHE B 22 6.996 6.157 4.469 1.00 46.08 C +ATOM 321 CZ PHE B 22 5.636 5.867 4.415 1.00 45.74 C +ATOM 322 N ASN B 23 9.019 10.613 5.767 1.00 46.04 N +ATOM 323 CA ASN B 23 9.707 11.001 4.522 1.00 46.82 C +ATOM 324 C ASN B 23 11.159 10.546 4.310 1.00 47.22 C +ATOM 325 O ASN B 23 11.711 10.741 3.221 1.00 47.50 O +ATOM 326 CB ASN B 23 9.582 12.511 4.281 1.00 46.85 C +ATOM 327 CG ASN B 23 8.570 12.851 3.193 1.00 47.41 C +ATOM 328 OD1 ASN B 23 7.402 12.460 3.263 1.00 47.41 O +ATOM 329 ND2 ASN B 23 9.016 13.596 2.185 1.00 48.44 N +ATOM 330 N SER B 24 11.769 9.963 5.341 1.00 47.58 N +ATOM 331 CA SER B 24 13.164 9.502 5.297 1.00 47.77 C +ATOM 332 C SER B 24 14.119 10.465 4.589 1.00 47.92 C +ATOM 333 O SER B 24 14.379 11.569 5.069 1.00 48.09 O +ATOM 334 CB SER B 24 13.253 8.110 4.659 1.00 47.93 C +ATOM 335 OG SER B 24 12.414 7.184 5.333 1.00 48.18 O diff --git a/ctest/dock_newcorr/2WFU_dock.inp b/ctest/dock_newcorr/2WFU_dock.inp new file mode 100644 index 0000000..bc1b44b --- /dev/null +++ b/ctest/dock_newcorr/2WFU_dock.inp @@ -0,0 +1,28 @@ +2wfu UNRES-Dock test +SEED=-77763650 pdbstart re one_letter BOXX=78.90 & +BOXY=78.90 BOXZ=78.90 CONSTR_HOMOL=8 pdbref tormode=2 + reset_vel=1000 nstep=200000 ntwe=1000 ntwx=1000 dt=0.2 lang=1 & +scal_fric=0.02 preminim cart read_minim_par +print_min_ini print_min_res print_min_stat maxfun=15000 +nrep=8 nstex=1000 tlist mlist sync nsyn=1000 traj1file rest1file & +TRAJCACHE=200 +270 280 290 300 310 320 330 345 +1 1 1 1 1 1 1 1 +WSC=0.81230 WSCP=1.20420 WELEC=0.87690 WBOND=1.00000 WANG=1.97730 & +WSCLOC=0.063657 WTOR=1.41540 WTORD=0.00000 WCORRH=0.00000 WCORR5=0.00000 & +WCORR6=0.00000 WEL_LOC=0.036638 WTURN3=1.45110 WTURN4=0.00000 WTURN6=0.00000 & +WSCCOR=0.00000 WVDWPP=0.33393 WHPB=1.00000 WSCP14=0.00000 & +CUTOFF=7.00000 WCORR4=0.00000 +plik1ter.pdb +0 +0 +HOMOL_DIST=0.1 HOMOL_ANGLE=1.0 HOMOL_THETA=1.0 HOMOL_SCD=1.0 DIST_CUT=15.0 & +READ2SIGMA START_FROM_MODELS +model01.pdb +model02.pdb +model03.pdb +model04.pdb +model05.pdb +model06.pdb +model07.pdb +model08.pdb diff --git a/ctest/dock_newcorr/cluster.inp b/ctest/dock_newcorr/cluster.inp new file mode 100644 index 0000000..1eacd3a --- /dev/null +++ b/ctest/dock_newcorr/cluster.inp @@ -0,0 +1,21 @@ +2wfu UNRES-Dock +nres=49 one_letter rescale=2 PRINT_CART PDBOUT=1 iopt=1 temper=280.0 ncut=0 & + CONSTR_HOMOL=8 tormode=2 & +BOXX=78.90 BOXY=78.90 BOXZ=78.90 +WSC=0.81230 WSCP=1.20420 WELEC=0.87690 WBOND=1.00000 WANG=1.97730 & +WSCLOC=0.063657 WTOR=1.41540 WTORD=0.00000 WCORRH=0.00000 WCORR5=0.00000 & +WCORR6=0.00000 WEL_LOC=0.036638 WTURN3=1.45110 WTURN4=0.00000 WTURN6=0.00000 & +WSCCOR=0.00000 WVDWPP=0.33393 WHPB=1.00000 WSCP14=0.00000 & +CUTOFF=7.00000 WCORR4=0.00000 +GVVDSCCRNSCSFSTLRAYCDSXXNSLRACGPALMDMLRVACPNGFNSX +0 +HOMOL_DIST=0.1 HOMOL_ANGLE=1.0 HOMOL_THETA=1.0 HOMOL_SCD=1.0 DIST_CUT=15.0 & +READ2SIGMA +model01.pdb +model02.pdb +model03.pdb +model04.pdb +model05.pdb +model06.pdb +model07.pdb +model08.pdb diff --git a/ctest/dock_newcorr/cluster_wham_check.sh b/ctest/dock_newcorr/cluster_wham_check.sh new file mode 100755 index 0000000..4865997 --- /dev/null +++ b/ctest/dock_newcorr/cluster_wham_check.sh @@ -0,0 +1,23 @@ +#!/bin/bash + +if [ "$1" == "cluster" ]; then + file=wham_T280K_ave.pdb +else + exit 1 +fi + +# Check if file exist +if [ ! -f $file ]; then + echo "CRITICAL: out $file does not exist" + exit 2 +fi + +fam=`grep THERE clust_clust.out_000|awk '{print $3}'` +grep THERE clust_clust.out_000 +grep REMARK wham*[1-9].pdb + + if [ "$fam" != "5" ]; then + echo 'ERROR: number of families not equal 5' + exit 1 + fi + diff --git a/ctest/dock_newcorr/mremd_check.sh b/ctest/dock_newcorr/mremd_check.sh new file mode 100755 index 0000000..c72de4f --- /dev/null +++ b/ctest/dock_newcorr/mremd_check.sh @@ -0,0 +1,19 @@ +#!/bin/bash + + rm -rf remd_all.stat + tail -q -n +200 2WFU_dock*.stat >remd_all.stat + if [ ! -s remd_all.stat ]; then + echo 'FATAL error - stat files empty' + exit 2 + fi + + grep ACC 2WFU_dock.out_GB000 |tail -7 + exchange=`grep ACC 2WFU_dock.out_GB000 |tail -7|awk '{a=a+$4}END{print a/NR}'` + echo "average exchange = ${exchange}" + if [ `echo "a=${exchange};a<0.2"|bc -l` != "0" ]; then + echo 'ERROR average exchange smaller than 0.2' + exit 1 + else + exit 0 + fi + diff --git a/ctest/dock_newcorr/test_mpi_DOCK.sh b/ctest/dock_newcorr/test_mpi_DOCK.sh new file mode 100755 index 0000000..58788b2 --- /dev/null +++ b/ctest/dock_newcorr/test_mpi_DOCK.sh @@ -0,0 +1,17 @@ +#!/bin/sh + +../../bin/generator $1 $2 0 8 -991234 +cat 2WFU_A.pdb > plik1ter.pdb +echo TER >> plik1ter.pdb +cat 2WFU_B.pdb >> plik1ter.pdb + +pdb=`ls model??.pdb |wc -w` +sco=`ls template??.sco |wc -w` + +if [ "$pdb" = "8" ] && [ "$sco" = "8" ]; then + echo "8 starting models generated" +else + exit 1 +fi + + \ No newline at end of file diff --git a/ctest/dock_newcorr/wham.inp b/ctest/dock_newcorr/wham.inp new file mode 100644 index 0000000..0369f4d --- /dev/null +++ b/ctest/dock_newcorr/wham.inp @@ -0,0 +1,44 @@ + isampl=1 & +SEED=-77763650 einicheck=1 rescale=2 delta=0.02 cxfile classify & + n_ene=19 CONSTR_HOMOL=8 tormode=2 & +BOXX=78.90 BOXY=78.90 BOXZ=78.90 +nres=49 one_letter +GVVDSCCRNSCSFSTLRAYCDSXXNSLRACGPALMDMLRVACPNGFNSX +0 +HOMOL_DIST=0.1 HOMOL_ANGLE=1.0 HOMOL_THETA=1.0 HOMOL_SCD=1.0 DIST_CUT=15.0 & +READ2SIGMA +model01.pdb +model02.pdb +model03.pdb +model04.pdb +model05.pdb +model06.pdb +model07.pdb +model08.pdb +WSC=0.81230 WSCP=1.20420 WELEC=0.87690 WBOND=1.00000 WANG=1.97730 & +WSCLOC=0.063657 WTOR=1.41540 WTORD=0.00000 WCORRH=0.00000 WCORR5=0.00000 & +WCORR6=0.00000 WEL_LOC=0.036638 WTURN3=1.45110 WTURN4=0.00000 WTURN6=0.00000 & +WSCCOR=0.00000 WVDWPP=0.33393 WHPB=1.00000 WSCP14=0.00000 & +CUTOFF=7.00000 WCORR4=0.00000 + +nt=8 replica read_iset +nr=1 temp=270 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=280 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=290 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=300 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=310 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=320 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=330 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nr=1 temp=345 fi=0.0 0.0 0.0 0.0 0.0 +kh= 0.0 Q0=0.0 +nfile_cx=1 rec_start=50 rec_end=500 totraj=8 +2WFU_dock_MD000 +pdbref +plik1ter.pdb diff --git a/ctest/dock_newcorr/wham_check.sh b/ctest/dock_newcorr/wham_check.sh new file mode 100755 index 0000000..bdd5445 --- /dev/null +++ b/ctest/dock_newcorr/wham_check.sh @@ -0,0 +1,41 @@ +#!/bin/bash + +if [ "$1" == "wham" ]; then + file=wham.thermal +else + exit 1 +fi + +# Check if file exist +if [ ! -f $file ]; then + echo "CRITICAL: out $file do not exist" + exit 2 +fi + +error=0 +max=`awk '{print $1,$7*1}' $file | sort -n -k 2 | awk 'END{print $1}'` +echo 'T of max Cv(T) ' $max +rms=`awk '{if ($1<280) {a=a+$5;n++}}END{print a/n}' $file` +echo 'average rms for T<280 ' $rms + + if [ `grep differs wham.out* |wc -l` != "0" ]; then + echo 'ERROR: energy differs remarkably from the value read in' + echo 'first 10 warnings' + grep differs wham.out*|head -10 + error=1 + fi + + if [ `echo "a=$max-268;if(0>a)a*=-1;a>10.0"|bc -l` != "0" ]; then + echo 'ERROR wrong T max of Cv(T) by more than 10 K' + error=1 + fi + + if [ `echo "a=$rms-2.2;if(0>a)a*=-1;a>0.2"|bc -l` != "0" ]; then + echo 'ERROR wrong average rms for T<280 by more than 0.2' + error=1 + fi + + if [ "$error" != "0" ];then + exit 1 + fi + \ No newline at end of file diff --git a/source/unres-dock/CMakeLists.txt b/source/unres-dock/CMakeLists.txt index 0d09fca..a27c3e2 100644 --- a/source/unres-dock/CMakeLists.txt +++ b/source/unres-dock/CMakeLists.txt @@ -48,13 +48,15 @@ install(TARGETS UNRES_DOCK_BIN DESTINATION ${CMAKE_INSTALL_PREFIX}/unres-dock) -FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/dock/ - DESTINATION ${CMAKE_CURRENT_BINARY_DIR} FILES_MATCHING PATTERN "*" ) if(UNRES_WITH_MPI) if(UNRES_MD_FF STREQUAL "E0LL2Y") + FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/dock/ + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} FILES_MATCHING PATTERN "*" ) + + set(UNRES_BIN "unresMD-mult_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") set(UNRES_WHAM_M_BIN "wham-mult_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") set(UNRES_CLUSTER_WHAM_M_BIN "cluster_wham-mult_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") @@ -186,5 +188,140 @@ FILE( COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/cluster_wham_mpi_E0LL2Y.sh add_test(NAME UNRES_M_DOCK_cluster COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/cluster_wham_mpi_E0LL2Y.sh cluster 2 ) + elseif(UNRES_MD_FF STREQUAL "NEWCORR") + + FILE(COPY ${CMAKE_SOURCE_DIR}/ctest/dock_newcorr/ + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} FILES_MATCHING PATTERN "*" ) + + set(UNRES_BIN "unresMD-mult_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") + set(UNRES_WHAM_M_BIN "wham-mult_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") + set(UNRES_CLUSTER_WHAM_M_BIN "cluster_wham-mult_${Fortran_COMPILER_NAME}_MPI_${UNRES_MD_FF}.exe") + +FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_mpi_E0LL2Y.sh +"#!/bin/sh +export POT=GB +export FGPROCS=$2 +export PREFIX=$1 +#----------------------------------------------------------------------------- +UNRES_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_BIN} +#----------------------------------------------------------------------------- +DD=${CMAKE_SOURCE_DIR}/PARAM +export BONDPAR=$DD/bond_AM1_ext_dum.parm +export THETPAR=$DD/theta_opt.parm.OPT_TRP1_FSD_Villin_E0L_QHK_N9L_LX7_BDD_I18 +export THETPARPDB=$DD/thetaml_ext.5parm +export ROTPARPDB=$DD/scgauss_ext.parm +export ROTPAR=$DD/rotamers_AM1_aura_ext.10022007.parm +export TORPAR=$DD/torsion_abinitio.parm-2d-all-DL-03-02-2cos +export TORDPAR=$DD/pot_tord_G631_DIL_ext.parm +export ELEPAR=$DD/electr_631Gdp_ext.parm +export SIDEPAR=$DD//scinter_GB_ext_lip.parm +export FOURIER=$DD/fourier_opt.parm.OPT_TRP1_FSD_Villin_E0L_QHK_N9L_LX7_BDD_I18 +export SCCORPAR=$DD/sccor_am1_pawel_ext.dat +export SCPPAR=$DD/scp_ext.parm +export PATTERN=$DD/patterns.cart +export LIPTRANPAR=$DD/Lip_tran_initial_ext.parm +#----------------------------------------------------------------------------- +echo CTEST_FULL_OUTPUT +${mpiexec} ${boot_lam} ${np} $3 $UNRES_BIN | grep -v traj1file +./mremd_check.sh $1 +") + +# +# File permissions workaround +# +FILE( COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/test_mpi_E0LL2Y.sh + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} + FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE +) + +FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/wham_mpi_E0LL2Y.sh +"#!/bin/sh +export POT=GB +export PREFIX=$1 +#----------------------------------------------------------------------------- +WHAM_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_WHAM_M_BIN} +#----------------------------------------------------------------------------- +DD=${CMAKE_SOURCE_DIR}/PARAM +export BONDPAR=$DD/bond_AM1_ext_dum.parm +export THETPAR=$DD/theta_opt.parm.OPT_TRP1_FSD_Villin_E0L_QHK_N9L_LX7_BDD_I18 +export ROTPAR=$DD/rotamers_AM1_aura_ext.10022007.parm +export TORPAR=$DD/torsion_abinitio.parm-2d-all-DL-03-02-2cos +export TORDPAR=$DD/pot_tord_G631_DIL_ext.parm +export ELEPAR=$DD/electr_631Gdp_ext.parm +export SIDEPAR=$DD/scinter_GB_ext_lip.parm +export FOURIER=$DD/fourier_opt.parm.OPT_TRP1_FSD_Villin_E0L_QHK_N9L_LX7_BDD_I18 +export SCPPAR=$DD/scp_ext.parm +export SCCORPAR=$DD/sccor_am1_pawel_ext.dat +export THETPARPDB=$DD/thetaml_ext.5parm +export ROTPARPDB=$DD/scgauss_ext.parm +export PATTERN=$DD/patterns.cart +export LIPTRANPAR=$DD/Lip_tran_initial_ext.parm +export CONTFUNC=GB +export SIDEP=$DD/contact_ext.3.parm +export SCRATCHDIR=. +#----------------------------------------------------------------------------- +echo CTEST_FULL_OUTPUT +${mpiexec} ${boot_lam} ${np} $2 $WHAM_BIN +./wham_check.sh $1 +") + +# +# File permissions workaround +# +FILE( COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/wham_mpi_E0LL2Y.sh + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} + FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE +) + +FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/scripts/cluster_wham_mpi_E0LL2Y.sh +"#!/bin/sh +export POT=GB +export INPUT=$1 +export INTIN=wham +export OUTPUT=clust +export PDB=CART +export COORD=CX +export PRINTCOOR=PRINT_PDB +#----------------------------------------------------------------------------- +CLUSTER_WHAM_BIN=${CMAKE_BINARY_DIR}/bin/${UNRES_CLUSTER_WHAM_M_BIN} +#----------------------------------------------------------------------------- +DD=${CMAKE_SOURCE_DIR}/PARAM +export BONDPAR=$DD/bond_AM1_ext_dum.parm +export THETPAR=$DD/theta_opt.parm.OPT_TRP1_FSD_Villin_E0L_QHK_N9L_LX7_BDD_I18 +export ROTPAR=$DD/rotamers_AM1_aura_ext.10022007.parm +export TORPAR=$DD/torsion_abinitio.parm-2d-all-DL-03-02-2cos +export TORDPAR=$DD/pot_tord_G631_DIL_ext.parm +export ELEPAR=$DD/electr_631Gdp_ext.parm +export SIDEPAR=$DD/scinter_GB_ext_lip.parm +export FOURIER=$DD/fourier_opt.parm.OPT_TRP1_FSD_Villin_E0L_QHK_N9L_LX7_BDD_I18 +export SCPPAR=$DD/scp_ext.parm +export SCCORPAR=$DD/sccor_am1_pawel_ext.dat +export THETPARPDB=$DD/thetaml_ext.5parm +export ROTPARPDB=$DD/scgauss_ext.parm +export PATTERN=$DD/patterns.cart +export LIPTRANPAR=$DD/Lip_tran_initial_ext.parm +export CONTFUNC=GB +export SIDEP=$DD/contact_ext.3.parm +export SCRATCHDIR=. +#----------------------------------------------------------------------------- +echo CTEST_FULL_OUTPUT +${mpiexec} ${boot_lam} ${np} $2 $CLUSTER_WHAM_BIN +./cluster_wham_check.sh $1 +") + +# +# File permissions workaround +# +FILE( COPY ${CMAKE_CURRENT_BINARY_DIR}/scripts/cluster_wham_mpi_E0LL2Y.sh + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} + FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE +) + + + add_test(NAME UNRES_M_DOCK_generator COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_DOCK.sh 2WFU_A.pdb 2WFU_B.pdb ) + add_test(NAME UNRES_M_DOCK_mremd COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/test_mpi_E0LL2Y.sh 2WFU_dock 1 8 ) + add_test(NAME UNRES_M_DOCK_wham COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/wham_mpi_E0LL2Y.sh wham 2) + add_test(NAME UNRES_M_DOCK_cluster COMMAND sh ${CMAKE_CURRENT_BINARY_DIR}/cluster_wham_mpi_E0LL2Y.sh cluster 2 ) + endif(UNRES_MD_FF STREQUAL "E0LL2Y") endif(UNRES_WITH_MPI)