From: Cezary Czaplewski Date: Wed, 16 Oct 2019 14:21:16 +0000 (+0200) Subject: about format update X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=commitdiff_plain;h=a61f63a845b6791cfb39cbedfcb2c8df5e138950;p=django_unres.git about format update --- diff --git a/django_simple/todo/templates/about.html b/django_simple/todo/templates/about.html index a1916c0..bb20adb 100644 --- a/django_simple/todo/templates/about.html +++ b/django_simple/todo/templates/about.html @@ -39,85 +39,85 @@ folds of fragments with 50-200 residues in length. Selected references:
  1. -C. Czaplewski, A. Karczyńska, A.K. Sieradzan, A. Liwo, +C. Czaplewski, A. Karczyńska, A.K. Sieradzan, A. Liwo.
    UNRES server for physics-based coarse-grained simulations and prediction of -protein structure, dynamics and thermodynamics. +protein structure, dynamics and thermodynamics.
    Nucleic Acids Res. 2018, 46. W304-W309. -gky328 +doi:10.1093/nar/gky328
  2. A. Liwo, C. Czaplewski, S. Oldziej, A.V. Rojas, R. Kazmierkiewicz, M. -Makowski, R.K. Murarka, H.A. Scheraga. Simulation of protein structure and -dynamics with the coarse-grained UNRES force field. In: Coarse-Graining of +Makowski, R.K. Murarka, H.A. Scheraga.
    Simulation of protein structure and +dynamics with the coarse-grained UNRES force field.
    In: Coarse-Graining of Condensed Phase and Biomolecular Systems., ed. G. Voth, Taylor & Francis, 2008, Chapter 8, pp. 107-122
  3. -Y. He, Y. Xiao, A. Liwo, H.A. Scheraga. Exploring the parameter space of the +Y. He, Y. Xiao, A. Liwo, H.A. Scheraga.
    Exploring the parameter space of the coarse-grained UNRES force field by random search: selecting a transferable -medium-resolution force field. +medium-resolution force field.
    J. Comput. Chem. 2009, 30, 2127-2135.
  4. A. Liwo, S. Ołdziej, C. Czaplewski, D. Kleinerman, P. Blood and H.A. -Scheraga. Implementation of molecular dynamics and its extensions with the +Scheraga.
    Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and -thermodynamics. J. Chem. Theory Comput. 2010, 6, 890-909. +thermodynamics.
    J. Chem. Theory Comput. 2010, 6, 890-909.
  5. A. Liwo, M. Baranowski, C. Czaplewski, E. Gołaś, Y. He, D. Jagieła, P. Krupa, M. Maciejczyk, M. Makowski, M.A. Mozolewska, A. Niadzvedtski, S. Ołdziej, H.A. Scheraga, A.K. Sieradzan, R. Ślusarz, T. Wirecki, Y. Yin, -B. Zaborowski. +B. Zaborowski.
    A unified coarse-grained model of biological macromolecules based on -mean-field multipole-multipole interactions +mean-field multipole-multipole interactions.
    J. Mol. Model. 2014, 20, 1-15.
  6. -A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski. +A.K. Sieradzan, P. Krupa, H.A. Scheraga, A. Liwo, C. Czaplewski.
    Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the United Residue (UNRES) force -field for protein simulations. +field for protein simulations.
    J. Chem. Theory. Comput. 2015, 11, 817-831.
  7. -P. Krupa, A. Hałabis, W. Żmudzińska, S. Ołdziej, H.A. Scheraga, A. Liwo. +P. Krupa, A. Hałabis, W. Żmudzińska, S. Ołdziej, H.A. Scheraga, A. Liwo.
    Maximum Likelihood Calibration of the UNRES Force Field for Simulation of -Protein Structure and Dynamics. +Protein Structure and Dynamics.
    J. Chem. Inf. Model. 2017, 57, 2364–2377.
  8. A. Karczyńska, M.A. Mozolewska, P. Krupa, A. Giełdoń, A. Liwo, C. -Czaplewski.Prediction of protein structure with the coarse-grained UNRES +Czaplewski.
    Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based -information. +information.
    Proteins: Struct. Funct. Bioinf. 2018, 86, 228-239.
  9. A. Liwo, A.K. Sieradzan, A.G. Lipska, C. Czaplewski, I. -Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej. +Joung, W. Żmudzińska, A. Hałabis, S. Ołdziej.
    A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent backbone-local and correlation potentials -in the UNRES force field and force-field calibration and validation. +in the UNRES force field and force-field calibration and validation.
    J. Chem. Phys. 2019, 150, 155104.
  10. E.A. Lubecka, A.S. Karczyńska, A.G. Lipska, A.K.Sieradzan, K. Zięba, C. Sikorska, U. Uciechowska, S.A. Samsonov, P. Krupa, M.A. Mozolewska, Ł. Golon, A. Giełdoń, -C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo +C. Czaplewski, R. Ślusarz, M. Ślusarz, S.N. Crivelli, A. Liwo.
    Evaluation of the scale-consistent UNRES force field in template-free -prediction of protein structures in the CASP13 experiment. +prediction of protein structures in the CASP13 experiment.
    J. Mol. Graph. Model. 2019, 92, 154-166.