From: Adam Kazimierz Sieradzan Date: Tue, 17 Jul 2012 08:40:16 +0000 (-0400) Subject: Merge branch 'adasko' into devel X-Git-Tag: v.3.2~72^2~5 X-Git-Url: http://mmka.chem.univ.gda.pl/gitweb/?a=commitdiff_plain;h=a20d7ba73b9caa74140350c4c97fa62d83711703;hp=2613142be7b5226fb002eaceb389e3f26766aa65;p=unres.git Merge branch 'adasko' into devel Dzialajacy D i L aminokwasy dla src_MD Conflicts: bin/unres/MD/unres_ifort_MPICH_GAB.exe bin/wham/wham_multparm-ham_rep-oldparm source/unres/src_MD/Makefile source/unres/src_MD/Makefile_MPICH_ifort source/unres/src_MD/cinfo.f source/wham/src/Makefile source/wham/src/cinfo.f --- diff --git a/.gitignore b/.gitignore index 3204def..3eaac99 100644 --- a/.gitignore +++ b/.gitignore @@ -11,6 +11,11 @@ # ignore build dir build/ +# latex files in documentation +doc/*/*.aux +doc/*/*.log + + # ignored dirs form adasko gradcheck/ mapcheck/ @@ -19,3 +24,5 @@ sympcheck/ bin/unres/MD/unres_ifort_MPICH_GAB_czyt.exe DIL compinfo +DIL/ +bin/unres/MD/unres_ifort_MPICH_GAB_czyt.exe diff --git a/bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe b/bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe deleted file mode 100755 index 5a2cb0a..0000000 Binary files a/bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe and /dev/null differ diff --git a/bin/unres/MD/unres_ifort_MPICH_GAB.exe b/bin/unres/MD/unres_ifort_MPICH_GAB.exe index b7cc647..3365b85 100755 Binary files a/bin/unres/MD/unres_ifort_MPICH_GAB.exe and b/bin/unres/MD/unres_ifort_MPICH_GAB.exe differ diff --git a/bin/unres/MD/unres_ifort_single_GAB.exe b/bin/unres/MD/unres_ifort_single_GAB.exe index 66109ea..228bcd7 100755 Binary files a/bin/unres/MD/unres_ifort_single_GAB.exe and b/bin/unres/MD/unres_ifort_single_GAB.exe differ diff --git a/bin/wham/wham_ifort_MPICH_E0LL2Y.exe b/bin/wham/wham_ifort_MPICH_E0LL2Y.exe index 508b4f6..b26354a 100755 Binary files a/bin/wham/wham_ifort_MPICH_E0LL2Y.exe and b/bin/wham/wham_ifort_MPICH_E0LL2Y.exe differ diff --git a/bin/wham/wham_multparm-ham_rep-oldparm b/bin/wham/wham_multparm-ham_rep-oldparm index b08f482..6f60701 100755 Binary files a/bin/wham/wham_multparm-ham_rep-oldparm and b/bin/wham/wham_multparm-ham_rep-oldparm differ diff --git a/ctest/1L2Y_MREMD_MD000.cx b/ctest/1L2Y_MREMD_MD000.cx new file mode 100644 index 0000000..672858c Binary files /dev/null and b/ctest/1L2Y_MREMD_MD000.cx differ diff --git a/ctest/1L2Yone.seq b/ctest/1L2Yone.seq new file mode 100644 index 0000000..8c76511 --- /dev/null +++ b/ctest/1L2Yone.seq @@ -0,0 +1,2 @@ +D ASN LEU TYR ILE GLN TRP LEU LYS ASP GLY GLY PRO SER SER GLY ARG PRO PRO PRO +SER D diff --git a/ctest/1L2Ythree.seq b/ctest/1L2Ythree.seq new file mode 100644 index 0000000..8c76511 --- /dev/null +++ b/ctest/1L2Ythree.seq @@ -0,0 +1,2 @@ +D ASN LEU TYR ILE GLN TRP LEU LYS ASP GLY GLY PRO SER SER GLY ARG PRO PRO PRO +SER D diff --git a/ctest/1LE1_mremd_MD000.cx b/ctest/1LE1_mremd_MD000.cx deleted file mode 100644 index 4cabd92..0000000 Binary files a/ctest/1LE1_mremd_MD000.cx and /dev/null differ diff --git a/ctest/ala10one.seq b/ctest/ala10one.seq new file mode 100644 index 0000000..da4b697 --- /dev/null +++ b/ctest/ala10one.seq @@ -0,0 +1 @@ +XAAAAAAAAAAX \ No newline at end of file diff --git a/ctest/ala10three.seq b/ctest/ala10three.seq new file mode 100644 index 0000000..314f4ba --- /dev/null +++ b/ctest/ala10three.seq @@ -0,0 +1 @@ +D Ala Ala Ala Ala Ala Ala Ala Ala Ala Ala D \ No newline at end of file diff --git a/doc/INSTALL/HOWTO_build_unres_with_cmake.pdf b/doc/INSTALL/HOWTO_build_unres_with_cmake.pdf new file mode 100644 index 0000000..962c9c2 Binary files /dev/null and b/doc/INSTALL/HOWTO_build_unres_with_cmake.pdf differ diff --git a/doc/INSTALL/HOWTO_build_unres_with_cmake.tex b/doc/INSTALL/HOWTO_build_unres_with_cmake.tex new file mode 100644 index 0000000..dabb02e --- /dev/null +++ b/doc/INSTALL/HOWTO_build_unres_with_cmake.tex @@ -0,0 +1,48 @@ +\documentclass{article} + +\newcommand{\shellcmd}[1]{\medskip\texttt{\footnotesize #1}\medskip} + +\begin{document} + + +\title{Building UNRESPACK with CMake} +\author{Dawid Jagiela} + +\maketitle + + +\section{Requirements} + +Starting with UNRESPACK 3.2, CMake (cross-platform, open-source build system ) can be used to build UNRESPACK. +Building requires te folowing: +\begin{itemize} + \item CMake 2.8 or later + \item Fortran compiler. Currently \emph{Intel Fortran Compiler} and \emph{GNU Fortran Compiler} are supported. The former one is recomended. + \item ANSI C compiler +\end{itemize} + +\section{Building} + +\raggedright + +Prepare the build directory + +\shellcmd{mkdir unrespack \\tar -xvzf unrespack-v.3.2.tar.gz -C unrespack \\cd unrespack \\mkdir build \&\& cd build} + +Configure CMake + +\begin{itemize} + \item Using command line, interactive mode(recomended) \shellcmd{ccmake ..} + \item Using command line, non-interactive mode. This requires to pass all the variables to CMake + \shellcmd{ cmake -DCMAKE\_Fortran\_COMPILER=ifort -DUNRES\_MD\_FF=GAB .. } +\end{itemize} + +To compile the whole package run: + +\shellcmd{make} + + + + +\end{document} + diff --git a/source/cluster/wham/src/int_from_cart1.f b/source/cluster/wham/src/int_from_cart1.f index 4f768e1..7d266de 100644 --- a/source/cluster/wham/src/int_from_cart1.f +++ b/source/cluster/wham/src/int_from_cart1.f @@ -24,6 +24,9 @@ enddo be=0.0D0 if (i.gt.2) phi(i+1)=beta(i-2,i-1,i,i+1) + if (i.gt.2) tauangle(3,i+1)=beta(i+nres-1,i-1,i,i+nres) + if (i.gt.2) tauangle(1,i+1)=beta(i-1+nres,i-1,i,i+1) + if (i.gt.2) tauangle(2,i+1)=beta(i-2,i-1,i,i+nres) omeg(i)=beta(nres+i,i,maxres2,i+1) theta(i+1)=alpha(i-1,i,i+1) alph(i)=alpha(nres+i,i,maxres2) diff --git a/source/unres/src_MD/COMMON.SCCOR b/source/unres/src_MD/COMMON.SCCOR index ca6210f..ccfe0c4 100644 --- a/source/unres/src_MD/COMMON.SCCOR +++ b/source/unres/src_MD/COMMON.SCCOR @@ -6,7 +6,7 @@ cc Parameters of the SCCOR term integer nterm_sccor,isccortyp,nsccortyp,nlor_sccor common/sccor/v1sccor(maxterm_sccor,3,20,20), & v2sccor(maxterm_sccor,3,20,20), - & v0sccor(maxterm_sccor,20), + & v0sccor(ntyp,ntyp), & nterm_sccor(ntyp,ntyp),isccortyp(ntyp),nsccortyp, & nlor_sccor(ntyp,ntyp),vlor1sccor(maxterm_sccor,20,20), & vlor2sccor(maxterm_sccor,20,20), diff --git a/source/unres/src_MD/Makefile b/source/unres/src_MD/Makefile index 8ebb82b..54399d1 100644 --- a/source/unres/src_MD/Makefile +++ b/source/unres/src_MD/Makefile @@ -43,7 +43,7 @@ object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \ GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \ -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC\ -DSCCORPDB -GAB: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_GAB_czyt.exe +GAB: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_GAB.exe GAB: ${object} xdrf/libxdrf.a cc -o compinfo compinfo.c ./compinfo | true diff --git a/source/unres/src_MD/Makefile_MPICH_ifort b/source/unres/src_MD/Makefile_MPICH_ifort new file mode 100644 index 0000000..4505541 --- /dev/null +++ b/source/unres/src_MD/Makefile_MPICH_ifort @@ -0,0 +1,124 @@ +################################################################### +INSTALL_DIR = /users/software/mpich-1.2.7p1_intel-10.1_em64_ssh + + +FC= ifort + +OPT = -g -ip -w -CB + +FFLAGS = -c ${OPT} -I$(INSTALL_DIR)/include +FFLAGS1 = -c -w -g -d2 -CA -CB -I$(INSTALL_DIR)/include +FFLAGS2 = -c -w -g -O0 -I$(INSTALL_DIR)/include +FFLAGSE = -c -w -O3 -ipo -ipo_obj -opt_report -I$(INSTALL_DIR)/include + + +LIBS = -L$(INSTALL_DIR)/lib -lmpich xdrf/libxdrf.a + +ARCH = LINUX +PP = /lib/cpp -P + + +all: unres + +.SUFFIXES: .F +.F.o: + ${FC} ${FFLAGS} ${CPPFLAGS} $*.F + + +object = unres.o arcos.o cartprint.o chainbuild.o convert.o initialize_p.o \ + matmult.o readrtns.o parmread.o gen_rand_conf.o printmat.o map.o \ + pinorm.o randgens.o rescode.o intcor.o timing.o misc.o intlocal.o \ + cartder.o checkder_p.o econstr_local.o energy_p_new_barrier.o \ + energy_p_new-sep_barrier.o gradient_p.o minimize_p.o sumsld.o \ + cored.o rmdd.o geomout.o readpdb.o regularize.o thread.o fitsq.o mcm.o \ + mc.o bond_move.o refsys.o check_sc_distr.o check_bond.o contact.o djacob.o \ + eigen.o blas.o add.o entmcm.o minim_mcmf.o \ + MP.o compare_s1.o prng.o \ + banach.o rmsd.o elecont.o dihed_cons.o \ + sc_move.o local_move.o \ + intcartderiv.o lagrangian_lesyng.o\ + stochfric.o kinetic_lesyng.o MD_A-MTS.o moments.o int_to_cart.o \ + surfatom.o sort.o muca_md.o MREMD.o rattle.o gauss.o energy_split-sep.o \ + q_measure.o gnmr1.o test.o + +GAB: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \ + -DSPLITELE -DLANG0 -DCRYST_BOND -DCRYST_THETA -DCRYST_SC +GAB: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_GAB.exe +GAB: ${object} xdrf/libxdrf.a + cc -o compinfo compinfo.c + ./compinfo | true + ${FC} ${FFLAGS} cinfo.f + ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN} + +E0LL2Y: CPPFLAGS = -DPROCOR -DLINUX -DPGI -DUNRES -DISNAN -DMP -DMPI \ + -DSPLITELE -DLANG0 +E0LL2Y: BIN = ../../../bin/unres/MD/unres_ifort_MPICH_E0LL2Y.exe +E0LL2Y: ${object} xdrf/libxdrf.a + cc -o compinfo compinfo.c + ./compinfo | true + ${FC} ${FFLAGS} cinfo.f + ${FC} ${OPT} ${object} cinfo.o ${LIBS} -o ${BIN} + +xdrf/libxdrf.a: + cd xdrf && make + + +clean: + /bin/rm -f *.o && /bin/rm -f compinfo && cd xdrf && make clean + +test.o: test.F + ${FC} ${FFLAGS} ${CPPFLAGS} test.F + +chainbuild.o: chainbuild.F + ${FC} ${FFLAGS} ${CPPFLAGS} chainbuild.F + +matmult.o: matmult.f + ${FC} ${FFLAGS} ${CPPFLAGS} matmult.f + +parmread.o : parmread.F + ${FC} ${FFLAGS} ${CPPFLAGS} parmread.F + +intcor.o : intcor.f + ${FC} ${FFLAGS} ${CPPFLAGS} intcor.f + +cartder.o : cartder.F + ${FC} ${FFLAGS} ${CPPFLAGS} cartder.F + +readpdb.o : readpdb.F + ${FC} ${FFLAGS2} ${CPPFLAGS} readpdb.F + +sumsld.o : sumsld.f + ${FC} ${FFLAGS} ${CPPFLAGS} sumsld.f + +cored.o : cored.f + ${FC} ${FFLAGS1} ${CPPFLAGS} cored.f + +rmdd.o : rmdd.f + ${FC} ${FFLAGS} ${CPPFLAGS} rmdd.f + +energy_p_new_barrier.o : energy_p_new_barrier.F + ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new_barrier.F + +gradient_p.o : gradient_p.F + ${FC} ${FFLAGSE} ${CPPFLAGS} gradient_p.F + +energy_p_new-sep_barrier.o : energy_p_new-sep_barrier.F + ${FC} ${FFLAGSE} ${CPPFLAGS} energy_p_new-sep_barrier.F + +lagrangian_lesyng.o : lagrangian_lesyng.F + ${FC} ${FFLAGSE} ${CPPFLAGS} lagrangian_lesyng.F + +MD_A-MTS.o : MD_A-MTS.F + ${FC} ${FFLAGSE} ${CPPFLAGS} MD_A-MTS.F + +blas.o : blas.f + ${FC} ${FFLAGS1} blas.f + +add.o : add.f + ${FC} ${FFLAGS1} add.f + +eigen.o : eigen.f + ${FC} ${FFLAGS2} eigen.f + +proc_proc.o: proc_proc.c + ${CC} ${CFLAGS} proc_proc.c diff --git a/source/unres/src_MD/cinfo.f b/source/unres/src_MD/cinfo.f index d3ab9f4..31a0d51 100644 --- a/source/unres/src_MD/cinfo.f +++ b/source/unres/src_MD/cinfo.f @@ -1,10 +1,10 @@ C DO NOT EDIT THIS FILE - IT HAS BEEN GENERATED BY COMPINFO.C -C 2 5 358 +C 2 5 360 subroutine cinfo include 'COMMON.IOUNITS' write(iout,*)'++++ Compile info ++++' - write(iout,*)'Version 2.5 build 358' - write(iout,*)'compiled Wed Jul 11 07:10:02 2012' + write(iout,*)'Version 2.5 build 360' + write(iout,*)'compiled Tue Jul 17 04:36:51 2012' write(iout,*)'compiled by aks255@matrix.chem.cornell.edu' write(iout,*)'OS name: Linux ' write(iout,*)'OS release: 2.6.34.9-69.fc13.x86_64 ' diff --git a/source/unres/src_MD/xdrf b/source/unres/src_MD/xdrf new file mode 120000 index 0000000..26825c5 --- /dev/null +++ b/source/unres/src_MD/xdrf @@ -0,0 +1 @@ +../../lib/xdrf \ No newline at end of file diff --git a/source/wham/src/cxread.F b/source/wham/src/cxread.F index 7bb2f6a..65372e3 100644 --- a/source/wham/src/cxread.F +++ b/source/wham/src/cxread.F @@ -54,14 +54,21 @@ c print *,"bumbum" do while (iret.gt.0) #if (defined(AIX) && !defined(JUBL)) +#ifdef DEBUG + write (iout,*) "ii",ii," itraj",itraj," it",it +#endif call xdrffloat_(ixdrf, rtime, iret) -c print *,"rtime",rtime," iret",iret call xdrffloat_(ixdrf, rpotE, iret) -c write (iout,*) "rpotE",rpotE," iret",iret +#ifdef DEBUG + write (iout,*) "rtime",rtime," rpotE",rpotE," iret",iret +#endif call flush(iout) call xdrffloat_(ixdrf, ruconst, iret) call xdrffloat_(ixdrf, rt_bath, iret) call xdrfint_(ixdrf, nss, iret) +#ifdef DEBUG + write (iout,*) "ruconst",ruconst," rt_bath",rt_bath," nss",nss +#endif do j=1,nss call xdrfint_(ixdrf, ihpb(j), iret) call xdrfint_(ixdrf, jhpb(j), iret) @@ -73,13 +80,21 @@ c write (iout,*) "rpotE",rpotE," iret",iret call xdrffloat_(ixdrf, rprop(i), iret) enddo #else +#ifdef DEBUG + write (iout,*) "ii",ii," itraj",itraj," it",it +#endif call xdrffloat(ixdrf, rtime, iret) call xdrffloat(ixdrf, rpotE, iret) -c write (iout,*) "rpotE",rpotE," iret",iret +#ifdef DEBUG + write (iout,*) "rtime",rtime," rpotE",rpotE," iret",iret +#endif call flush(iout) call xdrffloat(ixdrf, ruconst, iret) call xdrffloat(ixdrf, rt_bath, iret) call xdrfint(ixdrf, nss, iret) +#ifdef DEBUG + write (iout,*) "ruconst",ruconst," rt_bath",rt_bath," nss",nss +#endif do j=1,nss call xdrfint(ixdrf, ihpb(j), iret) call xdrfint(ixdrf, jhpb(j), iret) @@ -102,9 +117,6 @@ c write (iout,*) "nprop",nprop #endif if (iret.eq.0) exit itraj=mod(it,totraj(iR,iparm)) -#ifdef DEBUG - write (iout,*) "ii",ii," itraj",itraj," it",it -#endif if (iset.eq.0) iset = 1 call flush(iout) it=it+1 diff --git a/source/wham/src/energy_p_new.F b/source/wham/src/energy_p_new.F index 4b2dc0c..bf5c3e7 100644 --- a/source/wham/src/energy_p_new.F +++ b/source/wham/src/energy_p_new.F @@ -4547,7 +4547,7 @@ c amino-acid residues. C Set lprn=.true. for debugging lprn=.false. c lprn=.true. -c write (iout,*) "EBACK_SC_COR",iphi_start,iphi_end,nterm_sccor +c write (iout,*) "EBACK_SC_COR",itau_start,itau_end,nterm_sccor esccor=0.0D0 do i=itau_start,itau_end esccor_ii=0.0D0 diff --git a/source/wham/src/include_unres/COMMON.SCCOR b/source/wham/src/include_unres/COMMON.SCCOR index efab24f..28d748a 100644 --- a/source/wham/src/include_unres/COMMON.SCCOR +++ b/source/wham/src/include_unres/COMMON.SCCOR @@ -6,7 +6,7 @@ cc Parameters of the SCCOR term integer nterm_sccor,isccortyp,nsccortyp,nlor_sccor common /sccor/ v1sccor(maxterm_sccor,3,20,20), & v2sccor(maxterm_sccor,3,20,20), - & v0sccor(maxterm_sccor,20), + & v0sccor(ntyp,ntyp), & vlor1sccor(maxterm_sccor,20,20), & vlor2sccor(maxterm_sccor,20,20), & vlor3sccor(maxterm_sccor,20,20),gloc_sc(3,0:maxres2,10), diff --git a/source/wham/src/int_from_cart.f b/source/wham/src/int_from_cart.f index 12d0c9c..c0cd6e7 100644 --- a/source/wham/src/int_from_cart.f +++ b/source/wham/src/int_from_cart.f @@ -26,6 +26,10 @@ enddo be=0.0D0 if (i.gt.2) phi(i+1)=beta(i-2,i-1,i,i+1) + if (i.gt.2) tauangle(3,i+1)=beta(i+nres-1,i-1,i,i+nres) + if (i.gt.2) tauangle(1,i+1)=beta(i-1+nres,i-1,i,i+1) + if (i.gt.2) tauangle(2,i+1)=beta(i-2,i-1,i,i+nres) + omeg(i)=beta(nres+i,i,maxres2,i+1) theta(i+1)=alpha(i-1,i,i+1) alph(i)=alpha(nres+i,i,maxres2) diff --git a/source/wham/src/xdrf b/source/wham/src/xdrf new file mode 120000 index 0000000..26825c5 --- /dev/null +++ b/source/wham/src/xdrf @@ -0,0 +1 @@ +../../lib/xdrf \ No newline at end of file diff --git a/source/xdrfpdb/src/CMakeLists.txt b/source/xdrfpdb/src/CMakeLists.txt index 962d7fa..fbe654c 100644 --- a/source/xdrfpdb/src/CMakeLists.txt +++ b/source/xdrfpdb/src/CMakeLists.txt @@ -92,23 +92,34 @@ target_link_libraries( xdrf2ang xdrf ) # Create files needed for tests - -file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/ala10one.seq -"XAAAAAAAAAAX" -) -file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/ala10three.seq -"D Ala Ala Ala Ala Ala Ala Ala Ala Ala Ala D " -) +file( COPY ${CMAKE_SOURCE_DIR}/ctest/ala10one.seq + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) + +file( COPY ${CMAKE_SOURCE_DIR}/ctest/ala10three.seq + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) + +file( COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Yone.seq + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) + +file( COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Ythree.seq + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) file( COPY ${CMAKE_SOURCE_DIR}/ctest/ala10MD.cx DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) +file( COPY ${CMAKE_SOURCE_DIR}/ctest/1L2Y_MREMD_MD000.cx + DESTINATION ${CMAKE_CURRENT_BINARY_DIR} ) + # Test xdrf2pdb add_test(NAME XDRF2PDB-one COMMAND xdrf2pdb one ala10one.seq ala10MD.cx ) add_test(NAME XDRF2PDB-three COMMAND xdrf2pdb three ala10three.seq ala10MD.cx ) +# Test xdrf2pdb-m +add_test(NAME XDRF2PDB-M-one COMMAND xdrf2pdb-m one 1L2Yone.seq 1L2Y_MREMD_MD000.cx 32 30 ) +add_test(NAME XDRF2PDB-M-three COMMAND xdrf2pdb-m three 1L2Ythree.seq 1L2Y_MREMD_MD000.cx 32 30 ) + # Test xdrf2ang add_test(NAME XDRF2ANG-one COMMAND xdrf2ang one ala10one.seq ala10MD.cx ) add_test(NAME XDRF2ANG-three COMMAND xdrf2ang three ala10three.seq ala10MD.cx ) diff --git a/source/xdrfpdb/src/xdrf/ftocstr.o b/source/xdrfpdb/src/xdrf/ftocstr.o deleted file mode 100644 index f0102ea..0000000 Binary files a/source/xdrfpdb/src/xdrf/ftocstr.o and /dev/null differ diff --git a/source/xdrfpdb/src/xdrf/libxdrf.a b/source/xdrfpdb/src/xdrf/libxdrf.a deleted file mode 100644 index 9afbf43..0000000 Binary files a/source/xdrfpdb/src/xdrf/libxdrf.a and /dev/null differ diff --git a/source/xdrfpdb/src/xdrf/libxdrf.o b/source/xdrfpdb/src/xdrf/libxdrf.o deleted file mode 100644 index 1f81ca3..0000000 Binary files a/source/xdrfpdb/src/xdrf/libxdrf.o and /dev/null differ