todo

diff --git a/TODO b/TODO
index ec7412c..7e57796 100644 (file)
--- a/TODO
+++ b/TODO
@@ -1,21 +1,62 @@
 clean code and combine piasek and etoh versions 
+
 make easy install on any system with pbs
+
 add javascript instead of separate forms
-automatic download file from PDB using id
+
+option of automatic download file from PDB using id
+
 check input pdb for: 
        unknown residues, 
        max length (1000), 
        max number of dissulfides (30),
        etc,
         and display error
+
 check input for other errors (sequence ?)
+
 add web viewer NGL WebGL
+
 add BOXX BOXY BOXZ in advanced md and mremd
+
 dynamic dissulfides input - all and selected cys
+
 homology restraints input
+
 other restrains input
+
 MREMD - add cluster parameters, change after run and rerun only cluster analysis
       - button to make movie from selected trajectory after run
+
 examples+gallery
+
 documentation
-automatic rm of old jobs ?
\ No newline at end of file
+
+automatic rm of old jobs ?
+
+### NAR requirements:
+
+include a simple mechanism to try out sample data provided by the authors,
+for example, a button for automatic loading of the data. Sample data must be
+accessible to users so that they can confirm data formatting requirements
+
+contain help pages or a tutorial with links to sample output that performs
+interactively in the same way as real output. The help pages must include
+information on how to interpret the results returned by the web server
+
+be primarily web-based and viewable on the website. Use of browser plugins
+for data visualization is encouraged. However, use of Flash plugins is
+discouraged due to security issues and websites that use Java plugins will
+no longer be accepted
+
+provide a web link to the results if the website is not able to return
+results immediately. The link should be provided at the time of data
+submission and allow the user to bookmark and access the results at a later
+time. Ideally, the link will report the status of the job (queued, running,
+or finished). Do not assume that users will provide an email address for
+results notification. Any request for an email must state that it is
+optional. Websites that use a guest login will not be approved
+
+keep every user’s submitted data private and not viewable by anyone other
+than the user or those given permission by the user
+